FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_ACAM1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=dxs PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.423e-33
Identity = 64/107 (59.81%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            +A EG++P  AIYS+FLQRGYDQ++HDV +Q LPV F +DRAG+VGADGPTH G +DI ++ CLPNMV+MAP DEAEL  M+ T     D P   R+PRG+G+G  L
Sbjct:  379 MACEGMRPVVAIYSTFLQRGYDQIIHDVCIQNLPVFFCLDRAGIVGADGPTHQGMYDIAYLRCLPNMVMMAPKDEAELQQMLVTGINYTDGPIAMRYPRGSGLGVGL 485          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SHEWM (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=dxs PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.858e-33
Identity = 66/104 (63.46%), Postives = 81/104 (77.88%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGA 315
            A EG+KP  AIYS+FLQRGYDQ++HDV LQKLPV FA+DR G+VGADGPTH GAFD++FM  +PNMV+MAPSDE E   M+ T    +D P+  R+PRG+  GA
Sbjct:  381 ACEGLKPVVAIYSTFLQRGYDQLIHDVALQKLPVLFAIDRGGIVGADGPTHQGAFDLSFMRTVPNMVIMAPSDENECRQMLYTGYCYNDGPTAVRYPRGSATGA 484          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SHEB9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS195) GN=dxs PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.858e-33
Identity = 66/105 (62.86%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAV 318
            A EG KP  AIYS+FLQR YDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG+  GA+
Sbjct:  381 ACEGFKPVVAIYSTFLQRAYDQLIHDVALQQLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGSATGAM 485          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SHEB5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dxs PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.427e-33
Identity = 67/104 (64.42%), Postives = 78/104 (75.00%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGA 315
            A EG KP  AIYS+FLQR YDQ++HDV LQKLPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG   GA
Sbjct:  381 ACEGFKPVVAIYSTFLQRAYDQLIHDVALQKLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGCATGA 484          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CYAP4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxs PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.169e-33
Identity = 66/107 (61.68%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA EG++P   IYS+FLQR YDQ+VHDV +Q LPV F MDRAG+VGADGPTH G +DI ++ CLPNMV+MAP DEAEL  M+ T     D P   R+PRGNG G  L
Sbjct:  378 LACEGMRPVVTIYSTFLQRAYDQIVHDVCIQSLPVLFCMDRAGIVGADGPTHQGMYDIAYLRCLPNMVLMAPKDEAELQQMLVTGINYMDGPIGLRYPRGNGYGVAL 484          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SYNY3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=dxs PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.139e-33
Identity = 63/107 (58.88%), Postives = 80/107 (74.77%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            +A EG++P  AIYS+FLQRGYDQ++HDV +QKLPV F +DRAG+VGADGPTH G +DI ++ C+PN+V+MAP DEAEL  M+ T           R+PRGNGIG  L
Sbjct:  380 MACEGIRPVVAIYSTFLQRGYDQIIHDVCIQKLPVFFCLDRAGIVGADGPTHQGMYDIAYLRCIPNLVLMAPKDEAELQQMLVTGVNYTGGAIAMRYPRGNGIGVPL 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_TRIEI (1-deoxy-D-xylulose-5-phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=dxs PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.406e-33
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LASEG++P   IYS+FLQR YDQ++HDV +QKLPV F +DRAG+VGADGPTH G +DI ++ C+PNMVVMAP DE EL  MV T     D     R+PRGNG G  L
Sbjct:  380 LASEGMRPVVCIYSTFLQRAYDQIIHDVCIQKLPVFFCLDRAGIVGADGPTHQGMYDIAYLRCIPNMVVMAPKDEGELQRMVLTGIKHTDGAIAMRYPRGNGYGVPL 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SHEFN (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella frigidimarina (strain NCIMB 400) GN=dxs PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.406e-33
Identity = 64/104 (61.54%), Postives = 79/104 (75.96%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGA 315
            A  G+KP  AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM C+PNM++MAPSDE E   M+ T     D P+  R+PRG   GA
Sbjct:  381 ACAGLKPVVAIYSTFLQRGYDQLIHDVALQRLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMIIMAPSDENECRQMLYTGYCYQDGPTAVRYPRGFATGA 484          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_RHOCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodobacter capsulatus GN=dxs PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.406e-33
Identity = 66/104 (63.46%), Postives = 79/104 (75.96%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            +A+ G+KPF A+YSSF+QRGYDQ+VHDV LQ LPVR  +DRAGLVG DG TH GAFD++ ++ LPN  VMA +DEAEL HMV TAA  D  P   R+PRG G G
Sbjct:  382 MAAAGLKPFLALYSSFVQRGYDQLVHDVALQNLPVRLMIDRAGLVGQDGATHAGAFDVSMLANLPNFTVMAAADEAELCHMVVTAAAHDSGPIALRYPRGEGRG 485          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SHEPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=dxs PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.060e-33
Identity = 65/104 (62.50%), Postives = 80/104 (76.92%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGA 315
            A EG KP  AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM  +PNMV+MAPSDE E   M+ T    +D P+  R+PRG+  GA
Sbjct:  381 ACEGYKPVVAIYSTFLQRGYDQMIHDVALQRLPVLFAIDRGGIVGADGPTHQGAFDLSFMRIVPNMVIMAPSDENECRQMLYTGYCYNDGPTAVRYPRGSATGA 484          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_ACAM11.423e-3359.811-deoxy-D-xylulose-5-phosphate synthase OS=Acaryoc... [more]
DXS_SHEWM1.858e-3363.461-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEB91.858e-3362.861-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEB52.427e-3364.421-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_CYAP43.169e-3361.681-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_SYNY34.139e-3358.881-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_TRIEI5.406e-3360.751-deoxy-D-xylulose-5-phosphate synthase OS=Trichod... [more]
DXS_SHEFN5.406e-3361.541-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_RHOCA5.406e-3363.461-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoba... [more]
DXS_SHEPA7.060e-3362.501-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
back to top