FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SHEHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella halifaxensis (strain HAW-EB4) GN=dxs PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.060e-33
Identity = 65/104 (62.50%), Postives = 80/104 (76.92%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGA 315
            A EG KP  AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM  +PNMV+MAPSDE E   M+ T    +D P+  R+PRG+  GA
Sbjct:  381 ACEGYKPVVAIYSTFLQRGYDQLIHDVALQRLPVLFAIDRGGIVGADGPTHQGAFDLSFMRIVPNMVIMAPSDENECRQMLYTGYCYNDGPTAVRYPRGSATGA 484          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SHEB8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS185) GN=dxs PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.060e-33
Identity = 66/104 (63.46%), Postives = 78/104 (75.00%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGA 315
            A EG KP  AIYS+FLQR YDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG   GA
Sbjct:  381 ACEGFKPVVAIYSTFLQRAYDQLIHDVALQQLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGCATGA 484          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SHEB2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS223) GN=dxs PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.060e-33
Identity = 66/104 (63.46%), Postives = 78/104 (75.00%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGA 315
            A EG KP  AIYS+FLQR YDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG   GA
Sbjct:  381 ACEGFKPVVAIYSTFLQRAYDQLIHDVALQQLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGCATGA 484          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_METFK (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=dxs PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.060e-33
Identity = 63/107 (58.88%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            +A +G+KP  AIYS+FLQR YDQ +HD+ LQ LPV FA+DRAGLVGADGPTH G+FD++++ C+PN+++MAPSDE E   M+ T A + D PS  R+PRG G GA +
Sbjct:  373 MACDGLKPVVAIYSTFLQRAYDQFIHDIALQNLPVMFAIDRAGLVGADGPTHAGSFDLSYLRCIPNIIIMAPSDENECRQMLYT-AYLHDGPSAVRYPRGGGPGATI 478          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_GEOSW (1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus sp. (strain WCH70) GN=dxs PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.221e-33
Identity = 69/107 (64.49%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA++G+KPF AIYS+FLQR YDQVVHDV  Q L V FA+DRAGLVGADG TH G FDI F+  +PN+V+M P DE E  HMV TA   DD P   RFPRGNG+G  L
Sbjct:  377 LATQGMKPFLAIYSTFLQRAYDQVVHDVCRQNLNVFFAIDRAGLVGADGETHQGVFDIAFLRHVPNLVIMMPKDENEGQHMVYTAIQYDDGPIALRFPRGNGLGVKL 483          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_ANAD2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=dxs PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.221e-33
Identity = 66/107 (61.68%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA EG++P  AIYS+FLQR YDQ++HDV LQKLPV FA+DR GLVGADG TH GAFD+ ++ C+P +VVMAPSDE EL HM+ T ++  D P+  R+PRG G G  L
Sbjct:  378 LACEGIRPVVAIYSTFLQRAYDQIIHDVALQKLPVTFALDRGGLVGADGKTHQGAFDLAYLRCVPGLVVMAPSDENELRHMLHT-SLQHDGPAALRYPRGAGEGVAL 483          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_METCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylococcus capsulatus GN=dxs PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.204e-32
Identity = 66/103 (64.08%), Postives = 79/103 (76.70%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            ASEG KP  AIYS+FLQR YDQ++HDV LQ LPV FA+DRAGLVG DGPTH G+FD++FM C+PNM++MAPSDE E   M+ T   I D P+  R+PRG G G
Sbjct:  381 ASEGYKPVVAIYSTFLQRAYDQLIHDVALQNLPVLFAIDRAGLVGPDGPTHAGSFDLSFMRCIPNMLIMAPSDENECRQMLYT-GFIHDGPAAVRYPRGRGPG 482          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_LARHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=dxs PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.204e-32
Identity = 65/104 (62.50%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            +A +G+KP  AIYS+FLQR YDQ++HDV LQ LPV FA+DRAGLVGADGPTH GAFD++++ C+PNMVVMAPSDE E   ++ T A + D P+  R+PRG G G
Sbjct:  376 MACDGLKPVVAIYSTFLQRAYDQLIHDVALQNLPVVFAIDRAGLVGADGPTHAGAFDLSYLRCIPNMVVMAPSDENECRQLLYT-AFLHDGPTAVRYPRGTGPG 478          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_ENT38 (1-deoxy-D-xylulose-5-phosphate synthase OS=Enterobacter sp. (strain 638) GN=dxs PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.573e-32
Identity = 66/107 (61.68%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++F+ C+P+MVVM PSDE E   M+ T     D PS  R+PRGN +G  L
Sbjct:  380 LAIGGYKPIVAIYSTFLQRAYDQVIHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSFLRCVPDMVVMTPSDENECRQMLFTGYHYQDGPSAVRYPRGNAVGVEL 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CYAA5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=dxs PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.573e-32
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA EG++P  AIYS+FLQR YDQV+HDV +Q LPV F +DRAG+VGADGPTH G +DI ++ C+PN+ +MAP DEAEL  MV T     D P   R+PRG+G+G  L
Sbjct:  380 LACEGMRPVVAIYSTFLQRAYDQVLHDVCIQNLPVFFCLDRAGIVGADGPTHQGLYDIAYLRCIPNLTIMAPKDEAELQRMVVTGINHTDGPIAMRYPRGSGVGVPL 486          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_SHEHH7.060e-3362.501-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEB87.060e-3363.461-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEB27.060e-3363.461-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_METFK7.060e-3358.881-deoxy-D-xylulose-5-phosphate synthase OS=Methylo... [more]
DXS_GEOSW9.221e-3364.491-deoxy-D-xylulose-5-phosphate synthase OS=Geobaci... [more]
DXS_ANAD29.221e-3361.681-deoxy-D-xylulose-5-phosphate synthase OS=Anaerom... [more]
DXS_METCA1.204e-3264.081-deoxy-D-xylulose-5-phosphate synthase OS=Methylo... [more]
DXS_LARHH1.204e-3262.501-deoxy-D-xylulose-5-phosphate synthase OS=Laribac... [more]
DXS_ENT381.573e-3261.681-deoxy-D-xylulose-5-phosphate synthase OS=Enterob... [more]
DXS_CYAA51.573e-3258.881-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]

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Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
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