FC930357

Overview
NameFC930357
Unique NameFC930357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15110 contig Ccv1_Contig15110:104..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930357 vs. ExPASy Swiss-Prot
Match: DI194_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp. japonica GN=DI19-4 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 2 
Query:  233 EYPCPFCSEDFDLVGLCCHIDEEHPVEAKSGVCPVCVTRVTMDMVDHITTQHGNI--SNSWHKLKLHKGNSNSTISSLRKELQNAHFQSLL 499
            ++PCP+C ED D+  LC H+++EHP E+K   CPVC  R++ D++DHIT QH  +      H+L+     SN  +S   ++LQ  + + LL
Sbjct:   59 DFPCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSYLFRLQRHHRLRRVAVPSNHALSLGGRDLQETYLKVLL 149
The following BLAST results are available for this feature:
BLAST of FC930357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DI194_ORYSJ1.910e-1539.56Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionC34006F07EF PostHarvC1 Citrus clementina cDNA clone C34006F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930357 ID=FC930357; Name=FC930357; organism=Citrus clementina; type=EST; length=695bp
GGGGCTTAAATCAAAGGGGAAGCTTACTCGCTATTTTATGCTATCATCTG
AATTGGGTTTTGTTTGTGAATTTTAATTAACAGAAGATTCAATGGATTAC
AGTAGATACTTTGGTCTTTCTACTTCATCATCAAGGAACTATCAGTCAAC
TCTCAAGTCTCAGTTTGCGGATTTTTGCATTGATTTTGAGGATATAGAAG
AAGATGATTATGAGGAAGTGAAAGGAGAGTATGAGTATCCATGCCCATTT
TGTTCGGAGGATTTTGATTTAGTTGGATTATGCTGTCATATTGATGAGGA
ACATCCTGTTGAAGCAAAGTCGGGGGTATGCCCTGTTTGCGTTACAAGGG
TAACGATGGACATGGTTGATCACATAACAACACAACATGGAAACATTTCA
AATAGTTGGCACAAATTAAAACTTCATAAAGGCAACTCTAATTCAACTAT
ATCATCTTTGAGGAAAGAGTTGCAAAATGCACATTTTCAATCTCTTCTTG
CAAGGTCATCCTCTTCTGTTTCTTCCTCCAAAAAGACATCTGATCCATGG
CTATCATTTATTTACAACATGCCTACTGCTGACGAGTCTGAAAGCATACA
GCCTGCTTTGAGCACTGGAGAAGGAGCAGAAGATAAAAGCTCGTGTGAGA
AAACATTTNGAAACAATGCTCAGCAATCTTCCTTTGTCAACGAGG
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