FC930361
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14 Identity = 53/154 (34.42%), Postives = 78/154 (50.65%), Query Frame = 1 Query: 226 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 P+ SGN D T ++ V + +T+ L+ +F S G +E CKL+R YGF++Y D + A AI +LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14 Identity = 53/154 (34.42%), Postives = 78/154 (50.65%), Query Frame = 1 Query: 226 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 P+ SGN D T ++ V + +T+ L+ +F S G +E CKL+R YGF++Y D + A AI +LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14 Identity = 53/154 (34.42%), Postives = 78/154 (50.65%), Query Frame = 1 Query: 226 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 P+ SGN D T ++ V + +T+ L+ +F S G +E CKL+R YGF++Y D + A AI +LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13 Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDA-RVMWDQKTGRSRGFGFVSF 675 ++YVG + +V+E +L E+ GPV + + + +GF+ + A AI LN L+G+PIKVN A A + D NIFV +L PEV + L+ FS + ++M D +G S+GF F++F Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINF 149
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13 Identity = 42/141 (29.79%), Postives = 73/141 (51.77%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT-----SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 +V++ N+ + L + F++ G + CK+ + + + YGF+HY +A+ AI +NG L + + V R+ + NI+V +++PEVTD F Y + + + DQ+TG+SRGFGFV+F Sbjct: 150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNF 290
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13 Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 ++ V + +T+ L+ +F S G +E CKL+R YGF++Y D + A AI +LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13 Identity = 48/146 (32.88%), Postives = 82/146 (56.16%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 S+++G++ + E + F++ G V K+IR + Y F+ + D +A + +NG+ L G + K+N+A G++ D S +++FV DL+P+V D L+ F VYPSC +V+ DQ TG S+G+GFV F ++ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDE 147
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13 Identity = 48/146 (32.88%), Postives = 82/146 (56.16%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 S+++G++ + E + F++ G V K+IR + Y F+ + D +A + +NG+ L G + K+N+A G++ D S +++FV DL+P+V D L+ F VYPSC +V+ DQ TG S+G+GFV F ++ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDE 147
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13 Identity = 48/146 (32.88%), Postives = 82/146 (56.16%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 S+++G++ + E + F++ G V K+IR + Y F+ + D +A + +NG+ L G + K+N+A G++ D S +++FV DL+P+V D L+ F VYPSC +V+ DQ TG S+G+GFV F ++ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDE 147
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13 Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 S+YVG++H VTE +L E FS GP+ ++ R + Y +I++ A A+ ++N L GQPI++ W+ G R+ SG NIF+ +L + + L+ FS + + +V D+ SRGFGFV F Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRK--SGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEH--GSRGFGFVHF 145 The following BLAST results are available for this feature:
BLAST of FC930361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930361 ID=FC930361; Name=FC930361; organism=Citrus clementina; type=EST; length=684bpback to top |