FC930361

Overview
NameFC930361
Unique NameFC930361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930361_ssr125 microsatellite FC930361_ssr125:125..142. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11971 contig Ccv1_Contig11971:7..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 53/154 (34.42%), Postives = 78/154 (50.65%), Query Frame = 1
Query:  226 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            P+ SGN     D  T  ++ V  +   +T+  L+ +F S G +E CKL+R         YGF++Y D + A  AI +LNG  L  + IKV++A  S      +   N++V  L   +T   L   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 53/154 (34.42%), Postives = 78/154 (50.65%), Query Frame = 1
Query:  226 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            P+ SGN     D  T  ++ V  +   +T+  L+ +F S G +E CKL+R         YGF++Y D + A  AI +LNG  L  + IKV++A  S      +   N++V  L   +T   L   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 53/154 (34.42%), Postives = 78/154 (50.65%), Query Frame = 1
Query:  226 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            P+ SGN     D  T  ++ V  +   +T+  L+ +F S G +E CKL+R         YGF++Y D + A  AI +LNG  L  + IKV++A  S      +   N++V  L   +T   L   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDA-RVMWDQKTGRSRGFGFVSF 675
            ++YVG +  +V+E +L E+    GPV    +    +  +   +GF+ +     A  AI  LN   L+G+PIKVN A A  +  D     NIFV +L PEV +  L+  FS +       ++M D  +G S+GF F++F
Sbjct:   14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINF 149          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 42/141 (29.79%), Postives = 73/141 (51.77%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT-----SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            +V++ N+   +    L + F++ G +  CK+ + +  +   YGF+HY    +A+ AI  +NG  L  + + V        R+       +   NI+V +++PEVTD      F  Y   + + +  DQ+TG+SRGFGFV+F
Sbjct:  150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNF 290          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            ++ V  +   +T+  L+ +F S G +E CKL+R         YGF++Y D + A  AI +LNG  L  + IKV++A  S      +   N++V  L   +T   L   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 48/146 (32.88%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+++G++   + E  +   F++ G  V   K+IR       + Y F+ + D  +A   +  +NG+ L G    +  K+N+A   G++ D S  +++FV DL+P+V D  L+  F  VYPSC   +V+ DQ TG S+G+GFV F ++
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDE 147          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 48/146 (32.88%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+++G++   + E  +   F++ G  V   K+IR       + Y F+ + D  +A   +  +NG+ L G    +  K+N+A   G++ D S  +++FV DL+P+V D  L+  F  VYPSC   +V+ DQ TG S+G+GFV F ++
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDE 147          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 48/146 (32.88%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+++G++   + E  +   F++ G  V   K+IR       + Y F+ + D  +A   +  +NG+ L G    +  K+N+A   G++ D S  +++FV DL+P+V D  L+  F  VYPSC   +V+ DQ TG S+G+GFV F ++
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDE 147          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            S+YVG++H  VTE +L E FS  GP+   ++ R    +    Y +I++     A  A+ ++N   L GQPI++ W+    G R+  SG  NIF+ +L   + +  L+  FS + +    +V  D+    SRGFGFV F
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRK--SGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEH--GSRGFGFVHF 145          
The following BLAST results are available for this feature:
BLAST of FC930361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
ELAV2_PONAB5.989e-1434.42ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE5.989e-1434.42ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN5.989e-1434.42ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
SF3B4_CAEEL1.022e-1333.33Splicing factor 3B subunit 4 OS=Caenorhabditis ele... [more]
PABP_MAGGR2.972e-1329.79Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV2_XENTR2.972e-1334.31ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
TSAP1_RAT3.882e-1332.88tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_HUMAN3.882e-1332.88tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN3.882e-1332.88tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
PAP1L_HUMAN3.882e-1334.06Polyadenylate-binding protein 1-like OS=Homo sapie... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34006F11EF PostHarvC1 Citrus clementina cDNA clone C34006F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930361 ID=FC930361; Name=FC930361; organism=Citrus clementina; type=EST; length=684bp
TTTTTTTTTTTGGTTTTTTTTTTCTTTTCCTCATTTTCTCGAGAAACCCT
AACGAAATTTTCTCGGGAACCAAACATTTTACACCTTCTCGGATTCTGAA
GGAAAATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAGCAGCAACAACAA
GCACTGATGCAGCAAGCGCTTCTCCAACAACAGTCTCTCTATCATCCCGG
CCTCTTAGCCGCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTC
CTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGAAACATACAT
ACACAGGTGACAGAACCTCTTCTCCAGGAGGTCTTTTCAAGTACTGGTCC
AGTGGAAGGCTGCAAGCTTATTAGGAAGGACAAGTCATCATACGGATTTA
TTCACTATTTTGATCGCAGATCGGCTGCTATGGCTATACTTTCTCTTAAT
GGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCCAG
TGGTCAGAGGGAAGATACATCAGGTCATTTTAACATTTTTGTTGATGATC
TGAGCCCAGAAGTTACTGATGCTACGTTGTTTGCGTGCTTTTCTGTTTAT
CCCAGTTGTTCGGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGTTC
TAGAGGCTTTGGCTTTGTTTCTTTCCGGAACCAG
back to top