FC930361
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13 Identity = 47/138 (34.06%), Postives = 71/138 (51.45%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK-----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 ++ V + +T+ L+ +F S G +E CKL+R YGF++Y D + A AI +LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13 Identity = 52/154 (33.77%), Postives = 77/154 (50.00%), Query Frame = 1 Query: 226 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 P+ SGN D T ++ + +T+ L+ +F S G +E CKL+R YGF++Y D + A AI +LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 28 PVDSGNTE---DSKT--NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13 Identity = 44/141 (31.21%), Postives = 76/141 (53.90%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 S+YVG++H VTE +L E FS GP+ ++ R + Y +I++ A A+ ++N + G+PI++ W+ G R+ SG N+F+ +L + + L+ FS + + +V+ D+ SRG+GFV F Q Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRGYGFVHFETQ 148 HSP 2 Score: 73.1738 bits (178), Expect = 1.475e-12 Identity = 45/151 (29.80%), Postives = 77/151 (50.99%), Query Frame = 1 Query: 250 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 681 PG S +V++ N+ + L + FS+ G + CK++ + S YGF+H+ + +A AI ++NG L + + V + +RE G N+++ + ++ D L FS + + +VM D TGRSRGFGFV++ N Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGN 240
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13 Identity = 46/137 (33.58%), Postives = 70/137 (51.09%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 ++ V + +T+ + +F S G +E CKL+R YGF++Y D + A AI +LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13 Identity = 46/137 (33.58%), Postives = 70/137 (51.09%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 ++ V + +T+ + +F S G +E CKL+R YGF++Y D + A AI +LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13 Identity = 46/137 (33.58%), Postives = 70/137 (51.09%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 ++ V + +T+ + +F S G +E CKL+R YGF++Y D + A AI +LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12 Identity = 47/146 (32.19%), Postives = 81/146 (55.48%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 S+++G++ + E + F++ G V K+IR + Y F+ + D +A + +NG+ L G + K+N+ G++ D S +++FV DL+P+V D L+ F VYPSC +V+ DQ TG S+G+GFV F ++ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYV-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDE 147
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12 Identity = 43/143 (30.07%), Postives = 78/143 (54.55%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 S+YVG++H +VTE +L E FS GP+ ++ R + Y +++Y A A+ +LN + G+P+++ W+ QR+ + SG N+F+ +L + + L+ FS + + +V D+K +G+GFV F+ Q Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWS----QRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEK--GPKGYGFVHFQKQ 139
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12 Identity = 44/143 (30.77%), Postives = 74/143 (51.75%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 S+YVG + V+E LL ++FS G V ++ R Y ++++ D + AI LN + G+P ++ W+ QR+ + G NI++ +L P + + +L FS + + +V D+ G SRGFGFV F N+ Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWS----QRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDE-NGVSRGFGFVHFENE 176
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12 Identity = 43/138 (31.16%), Postives = 76/138 (55.07%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 S+Y+G++H VTE +L E FS GP+ ++ R + SY +I++ A A+ ++N + G+PI++ W+ G R+ SG N+F+ +L + + L+ FS + + +V+ D+ SRG+GFV F Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRGYGFVHF 145 HSP 2 Score: 71.2478 bits (173), Expect = 5.606e-12 Identity = 44/151 (29.14%), Postives = 76/151 (50.33%), Query Frame = 1 Query: 250 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 681 PG S +V++ N+ + L + FS+ G + CK++ + S YGF+H+ +A AI ++NG L + + V + +RE G N+++ + ++ D L FS + + +VM D +GRSRGFGFV++ N Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGN 240 The following BLAST results are available for this feature:
BLAST of FC930361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930361 ID=FC930361; Name=FC930361; organism=Citrus clementina; type=EST; length=684bpback to top |