FC930361

Overview
NameFC930361
Unique NameFC930361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 47/138 (34.06%), Postives = 71/138 (51.45%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK-----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            ++ V  +   +T+  L+ +F S G +E CKL+R          YGF++Y D + A  AI +LNG  L  + IKV++A  S      +   N++V  L   +T   L   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 52/154 (33.77%), Postives = 77/154 (50.00%), Query Frame = 1
Query:  226 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            P+ SGN     D  T  ++    +   +T+  L+ +F S G +E CKL+R         YGF++Y D + A  AI +LNG  L  + IKV++A  S      +   N++V  L   +T   L   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   28 PVDSGNTE---DSKT--NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 44/141 (31.21%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG++H  VTE +L E FS  GP+   ++ R    +    Y +I++     A  A+ ++N   + G+PI++ W+    G R+  SG  N+F+ +L   + +  L+  FS + +    +V+ D+    SRG+GFV F  Q
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRGYGFVHFETQ 148          

HSP 2 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 45/151 (29.80%), Postives = 77/151 (50.99%), Query Frame = 1
Query:  250 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 681
            PG   S   +V++ N+   +    L + FS+ G +  CK++  +  S  YGF+H+  + +A  AI ++NG  L  + + V    +  +RE   G       N+++ +   ++ D  L   FS + +    +VM D  TGRSRGFGFV++ N
Sbjct:   91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGN 240          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 46/137 (33.58%), Postives = 70/137 (51.09%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            ++ V  +   +T+   + +F S G +E CKL+R         YGF++Y D + A  AI +LNG  L  + IKV++A  S      +   N++V  L   +T   L   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 46/137 (33.58%), Postives = 70/137 (51.09%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            ++ V  +   +T+   + +F S G +E CKL+R         YGF++Y D + A  AI +LNG  L  + IKV++A  S      +   N++V  L   +T   L   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 46/137 (33.58%), Postives = 70/137 (51.09%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            ++ V  +   +T+   + +F S G +E CKL+R         YGF++Y D + A  AI +LNG  L  + IKV++A  S      +   N++V  L   +T   L   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 47/146 (32.19%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+++G++   + E  +   F++ G  V   K+IR       + Y F+ + D  +A   +  +NG+ L G    +  K+N+    G++ D S  +++FV DL+P+V D  L+  F  VYPSC   +V+ DQ TG S+G+GFV F ++
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYV-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDE 147          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 43/143 (30.07%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG++H +VTE +L E FS  GP+   ++ R    +    Y +++Y     A  A+ +LN   + G+P+++ W+    QR+ +   SG  N+F+ +L   + +  L+  FS + +    +V  D+K    +G+GFV F+ Q
Sbjct:    3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWS----QRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEK--GPKGYGFVHFQKQ 139          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 44/143 (30.77%), Postives = 74/143 (51.75%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG +   V+E LL ++FS  G V   ++ R         Y ++++ D  +   AI  LN   + G+P ++ W+    QR+ +    G  NI++ +L P + + +L   FS + +    +V  D+  G SRGFGFV F N+
Sbjct:   39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWS----QRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDE-NGVSRGFGFVHFENE 176          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 43/138 (31.16%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            S+Y+G++H  VTE +L E FS  GP+   ++ R    +   SY +I++     A  A+ ++N   + G+PI++ W+    G R+  SG  N+F+ +L   + +  L+  FS + +    +V+ D+    SRG+GFV F
Sbjct:   12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRGYGFVHF 145          

HSP 2 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 44/151 (29.14%), Postives = 76/151 (50.33%), Query Frame = 1
Query:  250 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 681
            PG   S   +V++ N+   +    L + FS+ G +  CK++  +  S  YGF+H+    +A  AI ++NG  L  + + V    +  +RE   G       N+++ +   ++ D  L   FS + +    +VM D  +GRSRGFGFV++ N
Sbjct:   91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGN 240          
The following BLAST results are available for this feature:
BLAST of FC930361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
ELAV2_XENLA3.882e-1334.06ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ELAV2_RAT3.882e-1333.77ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
EPAB_XENTR8.648e-1331.21Embryonic polyadenylate-binding protein OS=Xenopus... [more]
ELAV4_RAT8.648e-1333.58ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE8.648e-1333.58ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN8.648e-1333.58ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
TSAP1_PONAB1.129e-1232.19tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
PAP1M_HUMAN1.129e-1230.07Polyadenylate-binding protein 1-like 2 OS=Homo sap... [more]
PABP_ASHGO1.129e-1230.77Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPABA_XENLA1.475e-1231.16Embryonic polyadenylate-binding protein A OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionC34006F11EF PostHarvC1 Citrus clementina cDNA clone C34006F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930361 ID=FC930361; Name=FC930361; organism=Citrus clementina; type=EST; length=684bp
TTTTTTTTTTTGGTTTTTTTTTTCTTTTCCTCATTTTCTCGAGAAACCCT
AACGAAATTTTCTCGGGAACCAAACATTTTACACCTTCTCGGATTCTGAA
GGAAAATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAGCAGCAACAACAA
GCACTGATGCAGCAAGCGCTTCTCCAACAACAGTCTCTCTATCATCCCGG
CCTCTTAGCCGCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTC
CTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGAAACATACAT
ACACAGGTGACAGAACCTCTTCTCCAGGAGGTCTTTTCAAGTACTGGTCC
AGTGGAAGGCTGCAAGCTTATTAGGAAGGACAAGTCATCATACGGATTTA
TTCACTATTTTGATCGCAGATCGGCTGCTATGGCTATACTTTCTCTTAAT
GGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCCAG
TGGTCAGAGGGAAGATACATCAGGTCATTTTAACATTTTTGTTGATGATC
TGAGCCCAGAAGTTACTGATGCTACGTTGTTTGCGTGCTTTTCTGTTTAT
CCCAGTTGTTCGGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGTTC
TAGAGGCTTTGGCTTTGTTTCTTTCCGGAACCAG
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