FC930361

Overview
NameFC930361
Unique NameFC930361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 47/146 (32.19%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+++G++   + E  +   F++ G  V   K+IR       + Y F+ + D  +A   +  +NG+ L G    +  K+N+A   G++ D S  +++FV DL+P+V D  L+  F  VYPSC   +V+ D  TG S+G+GFV F ++
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDE 147          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 44/140 (31.43%), Postives = 78/140 (55.71%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            S+YVG++   V+E  L ++FS  G V   ++ R    K    Y ++++ D  +A  AI  LN   + G+  ++ W+    QR+ +    G  NIF+ +L P++ +  L+  FSV+ +   ++V  D+ TG+S+GFG+V F
Sbjct:   36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWS----QRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDE-TGKSKGFGYVHF 170          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 43/141 (30.50%), Postives = 75/141 (53.19%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+Y+G++H  VTE +L E FS  GP+   ++ R    +    Y +I++     A  A+ ++N   + G+PI++ W+    G R+  SG  N+F+ +L   + +  L+  FS +      +V+ D+    SRG+GFV F  Q
Sbjct:   12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEY--GSRGYGFVHFETQ 148          

HSP 2 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 44/151 (29.14%), Postives = 77/151 (50.99%), Query Frame = 1
Query:  250 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 681
            PG   S   +V++ N+   +    L + FS+ G +  CK++  +  S  YGF+H+  + +A  AI ++NG  L  + + V    +  +RE   G       N+++ +   ++ D  L   FS + +    +VM D  +GRSRGFGFV++ N
Sbjct:   91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGN 240          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 42/143 (29.37%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG++   V+E  L ++FS  G V   ++ R    K    Y ++++ D  +   AI  LN   + G+  ++ W+    QR+ +    G  NIF+ +L P++ +  L+  FSV+     +++  D+  G+S+GFGFV F  +
Sbjct:   39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWS----QRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEE 176          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 49/151 (32.45%), Postives = 73/151 (48.34%), Query Frame = 1
Query:  259 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI---RKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSG---HFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 681
            DPS  RS    +++ N+   +    L + FSS G +  CK+          YGF+ Y +  SA  AI  LNG  L  + + V       +R+ T+      N++V +L+   TD  L   F  Y   + A VM D + G+S+GFGFV+F N
Sbjct:  115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFEN 264          

HSP 2 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 42/140 (30.00%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG++   VT+  L + F   G V   +    L+ +    YG++++ + + AA AI  LN   L+G+PI+V +++        SG  NIF+ +L   +    L   FS + +    +V  D  +G+S+G+GFV + N+
Sbjct:   37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVR-RSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANE 174          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 42/143 (29.37%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG++H  VTE +L E FS  GP+   +    +I +    Y ++++     A  A+ ++N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F  Q
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 148          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 42/143 (29.37%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG++H  VTE +L E FS  GP+   +    +I +    Y ++++     A  A+ ++N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F  Q
Sbjct:   12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 148          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 42/143 (29.37%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG++H  VTE +L E FS  GP+   +    +I +    Y ++++     A  A+ ++N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F  Q
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 148          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 42/143 (29.37%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG++H  VTE +L E FS  GP+   +    +I +    Y ++++     A  A+ ++N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F  Q
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 148          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 42/143 (29.37%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG++H  VTE +L E FS  GP+   +    +I +    Y ++++     A  A+ ++N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F  Q
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 148          
The following BLAST results are available for this feature:
BLAST of FC930361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
TSAP1_MOUSE1.927e-1232.19tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
PABP_CANGA1.927e-1231.43Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPABB_XENLA1.927e-1230.50Embryonic polyadenylate-binding protein B OS=Xenop... [more]
PABP_YEAST3.286e-1229.37Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP2_ARATH3.286e-1232.45Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABPB_XENLA4.292e-1229.37Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABPA_XENLA4.292e-1229.37Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP1_RAT4.292e-1229.37Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE4.292e-1229.37Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP1_HUMAN4.292e-1229.37Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC34006F11EF PostHarvC1 Citrus clementina cDNA clone C34006F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930361 ID=FC930361; Name=FC930361; organism=Citrus clementina; type=EST; length=684bp
TTTTTTTTTTTGGTTTTTTTTTTCTTTTCCTCATTTTCTCGAGAAACCCT
AACGAAATTTTCTCGGGAACCAAACATTTTACACCTTCTCGGATTCTGAA
GGAAAATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAGCAGCAACAACAA
GCACTGATGCAGCAAGCGCTTCTCCAACAACAGTCTCTCTATCATCCCGG
CCTCTTAGCCGCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTC
CTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGAAACATACAT
ACACAGGTGACAGAACCTCTTCTCCAGGAGGTCTTTTCAAGTACTGGTCC
AGTGGAAGGCTGCAAGCTTATTAGGAAGGACAAGTCATCATACGGATTTA
TTCACTATTTTGATCGCAGATCGGCTGCTATGGCTATACTTTCTCTTAAT
GGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCCAG
TGGTCAGAGGGAAGATACATCAGGTCATTTTAACATTTTTGTTGATGATC
TGAGCCCAGAAGTTACTGATGCTACGTTGTTTGCGTGCTTTTCTGTTTAT
CCCAGTTGTTCGGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGTTC
TAGAGGCTTTGGCTTTGTTTCTTTCCGGAACCAG
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