FC930361
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12 Identity = 42/143 (29.37%), Postives = 77/143 (53.85%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 S+YVG++H VTE +L E FS GP+ + +I + Y ++++ A A+ ++N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + + +V+ D+ S+G+GFV F Q Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 148
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12 Identity = 44/149 (29.53%), Postives = 77/149 (51.68%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS------YGFIHYFDRRSAAMAILSLNGRHLFGQ--PIKVNWAYASGQREDT----SGHFNIFVDDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 ++++G++ + +Q++++S K++R SS Y F+ + +A A++ N + G K+NWA G + + F+IFV DL P D+ LF F S+YPSC+ A+++ D TG SR +GFV F ++ Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSE 234
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12 Identity = 42/140 (30.00%), Postives = 74/140 (52.86%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 S+YVG++H VTE LL FS+ GPV ++ R + Y ++++ A A+ ++N + G+ I++ W+ SG N+F+ +L + + TL+ FS + ++VM D + S+G+ FV F+NQ Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ--GSKGYAFVHFQNQ 147
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12 Identity = 43/140 (30.71%), Postives = 76/140 (54.29%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 S+YVG++H VTE +L E FS GP+ + LI S+Y ++++ + A A+ ++N + G+P+++ W+ QR+ + SG NIFV +L + + L+ S + + V+ D+ S+G+GFV F Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHF 145
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12 Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 ++Y+GN+ +VT+ +L E+ GPV + +R + +GF + + A LN LFG+PI+VN A + + +T N+FV +L P V + L+ FS A + + GRS+G+GFVS+ Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRA-SQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12 Identity = 45/155 (29.03%), Postives = 77/155 (49.68%), Query Frame = 1 Query: 232 PSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 PSG P T S+YVG + VTE +L E+F+S GPV ++ R + Y ++++ + A+ LN + G+P ++ W+ QR+ + G N+F+ +L P + + L FS + +V D+ G ++G+GFV F Sbjct: 72 PSGTAP------TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS----QRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHF 215 HSP 2 Score: 68.1662 bits (165), Expect = 4.745e-11 Identity = 43/151 (28.48%), Postives = 76/151 (50.33%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGH---------------FNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 +VY+ N+ T++TE ++F G + L++ DK +GF++Y + A A+ LN + G+ + V A +RE+ N+F+ +L EV D L A FS + + + A++M D++ G+S+GFGFV + Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCY 411
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12 Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = 1 Query: 259 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT-----SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 681 DPS R+ +++ N+H + L + FS+ G + CK+ + +GF+HY +A AI ++NG L + + V + RE + N++V +L+PEV +A F + + + DQ+ G+SRGFGFV+F N Sbjct: 137 DPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFEN 288
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12 Identity = 43/159 (27.04%), Postives = 77/159 (48.43%), Query Frame = 1 Query: 211 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 AP++ + S P P + S+YVG + VTE +L E+FSS G V ++ R + Y +++Y + A+ LN + G+P ++ W+ T G N+F+ +L + + L F+ + + +V D+ G S+G+GFV + Sbjct: 29 APEVTAVESTTAPNASQPHSA-SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHY 184
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12 Identity = 42/143 (29.37%), Postives = 77/143 (53.85%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 S+YVG++H+ VTE +L E FS GPV + +I + Y ++++ A A+ ++N + G+PI++ W+ QR+ + SG N+F+ +L + + L+ FS + + +V+ D+ S+G+ FV F Q Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWS----QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQ 148
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12 Identity = 54/165 (32.73%), Postives = 80/165 (48.48%), Query Frame = 1 Query: 238 GNLPPGFDPSTCRSVYVG------NIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP---IKVNWAYASGQREDTS-------GHFNIFVDDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRN 681 G+L P +D +T R ++ N+ L SS GP K+ Y F+ + AA A+L NG + P +K+NWA +S + S + +IFV DL+P VT++ LF F + Y S S A+++ DQ TG S+G+GFV F N Sbjct: 59 GDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP--------KNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTN 214 The following BLAST results are available for this feature:
BLAST of FC930361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930361 ID=FC930361; Name=FC930361; organism=Citrus clementina; type=EST; length=684bpback to top |