FC930361

Overview
NameFC930361
Unique NameFC930361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 42/143 (29.37%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG++H  VTE +L E FS  GP+   +    +I +    Y ++++     A  A+ ++N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F  Q
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 148          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 44/149 (29.53%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS------YGFIHYFDRRSAAMAILSLNGRHLFGQ--PIKVNWAYASGQREDT----SGHFNIFVDDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            ++++G++   +    +Q++++S       K++R   SS      Y F+ +    +A  A++  N   + G     K+NWA   G + +        F+IFV DL P   D+ LF  F S+YPSC+ A+++ D  TG SR +GFV F ++
Sbjct:   86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSE 234          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 42/140 (30.00%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG++H  VTE LL   FS+ GPV   ++ R    +    Y ++++     A  A+ ++N   + G+ I++ W+         SG  N+F+ +L   + + TL+  FS +     ++VM D +   S+G+ FV F+NQ
Sbjct:   11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ--GSKGYAFVHFQNQ 147          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 43/140 (30.71%), Postives = 76/140 (54.29%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            S+YVG++H  VTE +L E FS  GP+   +    LI    S+Y ++++   + A  A+ ++N   + G+P+++ W+    QR+ +   SG  NIFV +L   + +  L+   S + +     V+ D+    S+G+GFV F
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHF 145          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            ++Y+GN+  +VT+ +L E+    GPV    +    +R   + +GF  +   +    A   LN   LFG+PI+VN A +  +  +T    N+FV +L P V +  L+  FS       A  +   + GRS+G+GFVS+
Sbjct:   12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRA-SQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 45/155 (29.03%), Postives = 77/155 (49.68%), Query Frame = 1
Query:  232 PSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            PSG  P      T  S+YVG +   VTE +L E+F+S GPV   ++ R    +    Y ++++ +      A+  LN   + G+P ++ W+    QR+ +    G  N+F+ +L P + +  L   FS +      +V  D+  G ++G+GFV F
Sbjct:   72 PSGTAP------TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS----QRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHF 215          

HSP 2 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 43/151 (28.48%), Postives = 76/151 (50.33%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGH---------------FNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            +VY+ N+ T++TE    ++F   G +    L++   DK   +GF++Y +   A  A+  LN +   G+ + V  A    +RE+                    N+F+ +L  EV D  L A FS + + + A++M D++ G+S+GFGFV +
Sbjct:  262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCY 411          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  259 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT-----SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 681
            DPS  R+    +++ N+H  +    L + FS+ G +  CK+   +      +GF+HY    +A  AI ++NG  L  + + V    +   RE       +   N++V +L+PEV +A     F  +   +   +  DQ+ G+SRGFGFV+F N
Sbjct:  137 DPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFEN 288          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 43/159 (27.04%), Postives = 77/159 (48.43%), Query Frame = 1
Query:  211 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            AP++  + S   P    P +  S+YVG +   VTE +L E+FSS G V   ++ R    +    Y +++Y +      A+  LN   + G+P ++ W+        T G  N+F+ +L   + +  L   F+ + +    +V  D+  G S+G+GFV +
Sbjct:   29 APEVTAVESTTAPNASQPHSA-SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHY 184          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 42/143 (29.37%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG++H+ VTE +L E FS  GPV   +    +I +    Y ++++     A  A+ ++N   + G+PI++ W+    QR+ +   SG  N+F+ +L   + +  L+  FS + +    +V+ D+    S+G+ FV F  Q
Sbjct:   12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWS----QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQ 148          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 54/165 (32.73%), Postives = 80/165 (48.48%), Query Frame = 1
Query:  238 GNLPPGFDPSTCRSVYVG------NIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP---IKVNWAYASGQREDTS-------GHFNIFVDDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRN 681
            G+L P +D +T R ++        N+       L     SS GP        K+   Y F+ +     AA A+L  NG  +   P   +K+NWA +S    + S        + +IFV DL+P VT++ LF  F + Y S S A+++ DQ TG S+G+GFV F N
Sbjct:   59 GDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP--------KNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTN 214          
The following BLAST results are available for this feature:
BLAST of FC930361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PABP1_BOVIN4.292e-1229.37Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
CSX1_SCHPO4.292e-1229.53RNA-binding post-transcriptional regulator csx1 OS... [more]
PAB4L_HUMAN5.606e-1230.00Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
PABP3_HUMAN7.321e-1230.71Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
SAP49_SCHPO9.562e-1231.39Spliceosome-associated protein 49 OS=Schizosacchar... [more]
PABP_SCHPO9.562e-1229.03Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICGU9.562e-1229.41Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPOR9.562e-1227.04Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP4_HUMAN9.562e-1229.37Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
NAM8_YEAST9.562e-1232.73Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]

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Properties
Property NameValue
Genbank descriptionC34006F11EF PostHarvC1 Citrus clementina cDNA clone C34006F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930361 ID=FC930361; Name=FC930361; organism=Citrus clementina; type=EST; length=684bp
TTTTTTTTTTTGGTTTTTTTTTTCTTTTCCTCATTTTCTCGAGAAACCCT
AACGAAATTTTCTCGGGAACCAAACATTTTACACCTTCTCGGATTCTGAA
GGAAAATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAGCAGCAACAACAA
GCACTGATGCAGCAAGCGCTTCTCCAACAACAGTCTCTCTATCATCCCGG
CCTCTTAGCCGCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTC
CTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGAAACATACAT
ACACAGGTGACAGAACCTCTTCTCCAGGAGGTCTTTTCAAGTACTGGTCC
AGTGGAAGGCTGCAAGCTTATTAGGAAGGACAAGTCATCATACGGATTTA
TTCACTATTTTGATCGCAGATCGGCTGCTATGGCTATACTTTCTCTTAAT
GGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCCAG
TGGTCAGAGGGAAGATACATCAGGTCATTTTAACATTTTTGTTGATGATC
TGAGCCCAGAAGTTACTGATGCTACGTTGTTTGCGTGCTTTTCTGTTTAT
CCCAGTTGTTCGGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGTTC
TAGAGGCTTTGGCTTTGTTTCTTTCCGGAACCAG
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