FC930361

Overview
NameFC930361
Unique NameFC930361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 48/155 (30.97%), Postives = 76/155 (49.03%), Query Frame = 1
Query:  229 IPSGNL--PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            +P+G L    G    +  ++ V  +   +T+   + +F S G +E CKL+R         YGF++Y D   A  AI +LNG  L  + IKV++A  S      +   N++V  L   ++   +   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 41/143 (28.67%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG++H   TE +L E FS  GP+   +    +I +    Y ++++     A  A+ ++N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F  Q
Sbjct:   12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 148          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 45/169 (26.63%), Postives = 82/169 (48.52%), Query Frame = 1
Query:  193 HPGLLAAPQIEPIPSGNLPPGFDPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            +P   +AP++  + S +  P   PS  +    S+YVG +   VTE +L E+FSS G V   ++ R    +    Y +++Y +      A+  LN   + G+P ++ W+        T G  N+F+ +L   + +  L   F+ + +    +V  D+  G S+G+GFV +
Sbjct:   23 NPAATSAPEVTAVESAS--PSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHY 187          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 44/137 (32.12%), Postives = 68/137 (49.64%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            ++ V  +   +T+   + +F S G +E CKL+R         YGF++Y D   A  AI +LNG  L  + IKV++A  S      +   N++V  L   +    +   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 168          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 48/155 (30.97%), Postives = 76/155 (49.03%), Query Frame = 1
Query:  229 IPSGNL--PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            +P+G L    G    +  ++ V  +   +T+   + +F S G +E CKL+R         YGF++Y D   A  AI +LNG  L  + IKV++A  S      +   N++V  L   ++   +   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 48/150 (32.00%), Postives = 78/150 (52.00%), Query Frame = 1
Query:  259 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR-EDTSGHF-NIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 681
            DPS  +S    V++ N+   +    L + FS+ G +  CK++  D +S   +GF+HY  + SA  AI  +NG  + GQ + V    +S +R + T   F N+F  +LS +V    L      Y   ++  +M D K G+S+GFGF +F +
Sbjct:   89 DPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFES 237          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            ++ V  +   +T+  L+ +FSS G VE  KLIR   +     YGF++Y + + A  AI +LNG  L  + IKV++A  S    +T    N+++  L   +T   +   F  +    ++RV+ DQ TG SRG  F+ F
Sbjct:   21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPS---SETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRF 154          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 49/170 (28.82%), Postives = 81/170 (47.65%), Query Frame = 1
Query:  208 AAPQIEPIPSGNLPPGFDPS-------TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            AA + E + + + P G + +       +  S+YVG ++T V E  L E+FS  G V   ++ R    K    Y +++Y        AI  LN   + G+P ++ W+    QR+ +   SG  NIF+ +L P + +  L   FS +      +V  D   G+S+ FGFV +
Sbjct:   23 AAAEEEAVAAESAPAGEEGADSANVAESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMWS----QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDD-MGQSKCFGFVHY 187          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 43/160 (26.88%), Postives = 74/160 (46.25%), Query Frame = 1
Query:  208 AAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675
            AAP  E   +    P        S+YVG +   VTE +L E+FSS G V   ++ R    +    Y +++Y +      A+  LN   + G+P ++ W+        T G  N+F+ +L   + +  L   F+ + +    +V  D+  G S+G+GFV +
Sbjct:   26 AAPAAEATAAETAAPSTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHY 183          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 46/141 (32.62%), Postives = 74/141 (52.48%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG++H  VTE +L + F+    +   +L  KD SS     YG+ ++  R+ A +AI   N   L G+ I+V W+  +      +G  N+FV +L   VT+A L   F  + +    +V    + G+SRG+GFV F  +
Sbjct:   25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLC-KDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDAR-RNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQE 162          
The following BLAST results are available for this feature:
BLAST of FC930361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
ELAV3_MOUSE9.562e-1230.97ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
PABP1_PONAB1.249e-1128.67Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP_NEOFI1.631e-1126.63Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV3_XENLA1.631e-1132.12ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
ELAV3_HUMAN1.631e-1130.97ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
PAP1A_DICDI2.130e-1132.00Polyadenylate-binding protein 1-A OS=Dictyostelium... [more]
ELV1B_XENLA2.130e-1132.85ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
PABP_PICST2.782e-1128.82Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPTN2.782e-1126.88Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPX_ARATH2.782e-1132.62Probable polyadenylate-binding protein At2g36660 O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34006F11EF PostHarvC1 Citrus clementina cDNA clone C34006F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930361 ID=FC930361; Name=FC930361; organism=Citrus clementina; type=EST; length=684bp
TTTTTTTTTTTGGTTTTTTTTTTCTTTTCCTCATTTTCTCGAGAAACCCT
AACGAAATTTTCTCGGGAACCAAACATTTTACACCTTCTCGGATTCTGAA
GGAAAATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAGCAGCAACAACAA
GCACTGATGCAGCAAGCGCTTCTCCAACAACAGTCTCTCTATCATCCCGG
CCTCTTAGCCGCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTC
CTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGAAACATACAT
ACACAGGTGACAGAACCTCTTCTCCAGGAGGTCTTTTCAAGTACTGGTCC
AGTGGAAGGCTGCAAGCTTATTAGGAAGGACAAGTCATCATACGGATTTA
TTCACTATTTTGATCGCAGATCGGCTGCTATGGCTATACTTTCTCTTAAT
GGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCCAG
TGGTCAGAGGGAAGATACATCAGGTCATTTTAACATTTTTGTTGATGATC
TGAGCCCAGAAGTTACTGATGCTACGTTGTTTGCGTGCTTTTCTGTTTAT
CCCAGTTGTTCGGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGTTC
TAGAGGCTTTGGCTTTGTTTCTTTCCGGAACCAG
back to top