FC930361
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12 Identity = 48/155 (30.97%), Postives = 76/155 (49.03%), Query Frame = 1 Query: 229 IPSGNL--PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 +P+G L G + ++ V + +T+ + +F S G +E CKL+R YGF++Y D A AI +LNG L + IKV++A S + N++V L ++ + FS Y +R++ DQ TG SRG GF+ F Sbjct: 22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11 Identity = 41/143 (28.67%), Postives = 76/143 (53.15%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 S+YVG++H TE +L E FS GP+ + +I + Y ++++ A A+ ++N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + + +V+ D+ S+G+GFV F Q Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 148
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11 Identity = 45/169 (26.63%), Postives = 82/169 (48.52%), Query Frame = 1 Query: 193 HPGLLAAPQIEPIPSGNLPPGFDPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 +P +AP++ + S + P PS + S+YVG + VTE +L E+FSS G V ++ R + Y +++Y + A+ LN + G+P ++ W+ T G N+F+ +L + + L F+ + + +V D+ G S+G+GFV + Sbjct: 23 NPAATSAPEVTAVESAS--PSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHY 187
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11 Identity = 44/137 (32.12%), Postives = 68/137 (49.64%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 ++ V + +T+ + +F S G +E CKL+R YGF++Y D A AI +LNG L + IKV++A S + N++V L + + FS Y +R++ DQ TG SRG GF+ F Sbjct: 35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 168
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3) HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11 Identity = 48/155 (30.97%), Postives = 76/155 (49.03%), Query Frame = 1 Query: 229 IPSGNL--PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 +P+G L G + ++ V + +T+ + +F S G +E CKL+R YGF++Y D A AI +LNG L + IKV++A S + N++V L ++ + FS Y +R++ DQ TG SRG GF+ F Sbjct: 22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11 Identity = 48/150 (32.00%), Postives = 78/150 (52.00%), Query Frame = 1 Query: 259 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR-EDTSGHF-NIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 681 DPS +S V++ N+ + L + FS+ G + CK++ D +S +GF+HY + SA AI +NG + GQ + V +S +R + T F N+F +LS +V L Y ++ +M D K G+S+GFGF +F + Sbjct: 89 DPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFES 237
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11 Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 ++ V + +T+ L+ +FSS G VE KLIR + YGF++Y + + A AI +LNG L + IKV++A S +T N+++ L +T + F + ++RV+ DQ TG SRG F+ F Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPS---SETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRF 154
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11 Identity = 49/170 (28.82%), Postives = 81/170 (47.65%), Query Frame = 1 Query: 208 AAPQIEPIPSGNLPPGFDPS-------TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 AA + E + + + P G + + + S+YVG ++T V E L E+FS G V ++ R K Y +++Y AI LN + G+P ++ W+ QR+ + SG NIF+ +L P + + L FS + +V D G+S+ FGFV + Sbjct: 23 AAAEEEAVAAESAPAGEEGADSANVAESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMWS----QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDD-MGQSKCFGFVHY 187
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11 Identity = 43/160 (26.88%), Postives = 74/160 (46.25%), Query Frame = 1 Query: 208 AAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 AAP E + P S+YVG + VTE +L E+FSS G V ++ R + Y +++Y + A+ LN + G+P ++ W+ T G N+F+ +L + + L F+ + + +V D+ G S+G+GFV + Sbjct: 26 AAPAAEATAAETAAPSTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHY 183
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11 Identity = 46/141 (32.62%), Postives = 74/141 (52.48%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 S+YVG++H VTE +L + F+ + +L KD SS YG+ ++ R+ A +AI N L G+ I+V W+ + +G N+FV +L VT+A L F + + +V + G+SRG+GFV F + Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLC-KDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDAR-RNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQE 162 The following BLAST results are available for this feature:
BLAST of FC930361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930361 ID=FC930361; Name=FC930361; organism=Citrus clementina; type=EST; length=684bpback to top |