FC930361
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11 Identity = 45/137 (32.85%), Postives = 71/137 (51.82%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 ++ V + +T+ L+ +FSS G VE KLIR + YGF++Y + A AI +LNG L + IKV++A S + N+++ L +T + FS + ++RV+ DQ TG SRG F+ F Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPS---SEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11 Identity = 44/164 (26.83%), Postives = 76/164 (46.34%), Query Frame = 1 Query: 196 PGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 P + A P P+ N P S+YVG + VTE +L E+FSS G V ++ R + Y +++Y + A+ LN + G+P ++ W+ T G N+F+ +L + + L F+ + + +V D+ G S+G+GFV + Sbjct: 34 PEVTAVENSTPAPAANQPHS------ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHY 189
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11 Identity = 45/137 (32.85%), Postives = 71/137 (51.82%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 ++ V + +T+ L+ +FSS G VE KLIR + YGF++Y + A AI +LNG L + IKV++A S + N+++ L +T + FS + ++RV+ DQ TG SRG F+ F Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS---SEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11 Identity = 47/165 (28.48%), Postives = 82/165 (49.70%), Query Frame = 1 Query: 199 GLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTG-----PVEGCKLIRKDKS-SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 G P + P G P P S+YVG++ V E +L E+FS G + C+ +S Y ++++F+ A A+ +LN + G+P ++ W+Y + T+ NIFV +L V +A L+ FS + + +V +++ G S+G+G+V F Sbjct: 162 GAAGMPILSMSPIGAYQP---PHQLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVG-NIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEK--GISKGYGYVHF 320
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11 Identity = 44/164 (26.83%), Postives = 80/164 (48.78%), Query Frame = 1 Query: 208 AAPQIEPIPSGNLPPGFDPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 +AP++ + S + P PS + S+YVG + VTE +L E+FSS G V ++ R + Y +++Y + A+ LN + G+P ++ W+ T G N+F+ +L + + L F+ + + +V D+ G S+G+GFV + Sbjct: 28 SAPEVTAVESAS--PSTTPSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHY 187
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11 Identity = 44/154 (28.57%), Postives = 72/154 (46.75%), Query Frame = 1 Query: 226 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 675 P P+ P G S S+YVG + VTE +L E+F+ GPV ++ R + Y +++Y + A+ LN + GQ ++ W+ T G NIF+ +L + + L F+ + +V D+ G+SRGF FV + Sbjct: 32 PTPAAAAPGGNTVSA--SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQSCRIMWSQRDPALRKT-GQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDE-NGKSRGFAFVHY 181 The following BLAST results are available for this feature:
BLAST of FC930361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930361 ID=FC930361; Name=FC930361; organism=Citrus clementina; type=EST; length=684bpback to top |