FC930369

Overview
NameFC930369
Unique NameFC930369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9817 contig Ccv1_Contig9817:6..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSI (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. indica GN=SAMDC PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 3
Query:  525 PVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNE 698
            PVSAIGF GYEKRLE++F E  VFADP GRGLR+LS+ QI    + A CTIVS  SN+
Sbjct:   11 PVSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNK 68          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM1_BRAJU (S-adenosylmethionine decarboxylase proenzyme 1 OS=Brassica juncea GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNEYL 704
            + +SAIGF G  +RLEVSFFEP +F D  G+GLR+LSK QI     PAECTIVSS SN+ L
Sbjct:    1 MSLSAIGFEGLRERLEVSFFEPSLFLDTHGKGLRALSKSQIDEILAPAECTIVSSLSNDEL 61          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_MAIZE (S-adenosylmethionine decarboxylase proenzyme OS=Zea mays GN=SAMDC PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  519 ALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNE 698
            A PVSAIGF GYEKRLE++F E  VF DP GRGLR+LS+ QI    + A CTIVS  SN+
Sbjct:    9 ASPVSAIGFEGYEKRLEITFSEAPVFVDPHGRGLRALSRAQIDSVLDLARCTIVSELSNK 68          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM3_BRAJU (S-adenosylmethionine decarboxylase proenzyme 3 OS=Brassica juncea GN=SAMDC3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNEYL 704
            + +SAIGF GYEKRLEVSFFEP  F D  G GLR+L++ Q+     PA C IVSS SN++L
Sbjct:    1 MALSAIGFEGYEKRLEVSFFEPSFFQDSKGLGLRALTRSQLDEILTPAACEIVSSLSNDHL 61          
The following BLAST results are available for this feature:
BLAST of FC930369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DCAM_ORYSI9.250e-1365.52S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM1_BRAJU1.208e-1262.30S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_MAIZE2.061e-1263.33S-adenosylmethionine decarboxylase proenzyme OS=Ze... [more]
DCAM3_BRAJU4.591e-1259.02S-adenosylmethionine decarboxylase proenzyme 3 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34006G09EF PostHarvC1 Citrus clementina cDNA clone C34006G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930369 ID=FC930369; Name=FC930369; organism=Citrus clementina; type=EST; length=712bp
GAAAAACGAAACGGACGGAAGGAAATCGAAATTCGTTTTGTGAAACAGAG
TTAAAAATCAACCCTTCTTTAATCCTCAAGGAATTTTATTATTTTCTTGG
TCTCTGAATCGAGGGTTTTGCTTCTTGGTTTAGTGGGTTTGTTTTCGTTA
TATTATCTGAGAAAGGCTGAATGATCTAATGGAGTCAAAAGGTGGTAAGA
AGAAGTCTAGCAGTAGTTCCTTATTCTACGAAGCTCCTCTTGGTTACAGC
ATTGAAGACGTTCGACCTCACGGTGGCATAAAGAAGTTCAGATCAGCTGC
TTACTCAAACTGCGTCCGCAAACCATCCTGAGATCGTCCAATTTGTCCCA
TACCCCCCCAAAAAAAAGCTCACTACTACTGCAATTTTAATTTTTTTTAG
TTTTAGCCGTCTTAATACTGCAATTTACTTGGCCTATTTCTTTTTCGACT
TCCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCATTTGT
TTTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGGAGG
TTATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTG
ATCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCAAATTGGATGA
AATACTGAACCTGCGGAATGCACAATTGTTTCTTCGNTGTCAAATGAATA
TCTTTGATCATA
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