FC930380

Overview
NameFC930380
Unique NameFC930380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length347
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_RHIL3 (ATP synthase subunit beta OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=atpD PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.407e-46
Identity = 91/115 (79.13%), Postives = 100/115 (86.96%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD +EGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE G L T H   IH++AP++VEQ+TE QILVTGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   65 MDSSEGLVRGQEVADTGAPIMVPVGNETLGRIMNVIGEPVDEAGPLVTAHKRAIHQDAPSYVEQSTESQILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNVAKAH 179          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_RHILW (ATP synthase subunit beta OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=atpD PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.223e-46
Identity = 91/115 (79.13%), Postives = 100/115 (86.96%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD +EGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE G L T H   IH++AP++VEQ+TE QILVTGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   65 MDSSEGLVRGQEVSDTGAPIMVPVGNETLGRIMNVIGEPVDEAGPLVTAHKRAIHQDAPSYVEQSTEAQILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNVAKAH 179          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_RHISN (ATP synthase subunit beta OS=Rhizobium sp. (strain NGR234) GN=atpD PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.205e-45
Identity = 90/115 (78.26%), Postives = 101/115 (87.83%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ V +TG PI+VPVG+ TLGRIMNVIGEP+DE G ++T     IH++APA+VEQ+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   90 MDSTEGLVRGQSVTDTGGPISVPVGKETLGRIMNVIGEPVDEAGPVETSSRRAIHQDAPAYVEQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 204          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_CAEEL (ATP synthase subunit beta, mitochondrial OS=Caenorhabditis elegans GN=atp-2 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 2.055e-45
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MDGTEGLVRGQ V +TG PI +PVG  TLGRIMNVIGEPIDE+G + ++++  IH EAP FVE + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  122 MDGTEGLVRGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 236          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_DROME (ATP synthase subunit beta, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-beta PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 2.684e-45
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MDGTEGLVRGQ+VL+TG PI +PVG  TLGRI+NVIGEPIDE+G + T+    IH EAP FV+ + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   90 MDGTEGLVRGQKVLDTGYPIRIPVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEFVQMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 204          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_NEUCR (ATP synthase subunit beta, mitochondrial OS=Neurospora crassa GN=atp-2 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.578e-45
Identity = 86/115 (74.78%), Postives = 99/115 (86.09%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MDGTEGLVRG +  +TG+PIT+PVG  TLGRI+NV G+PIDE+G +KT+ + PIH EAP FVEQ+T  +ILVTGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAH
Sbjct:  102 MDGTEGLVRGAKASDTGAPITIPVGPATLGRIINVTGDPIDERGPIKTDKFRPIHAEAPEFVEQSTTAEILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAH 216          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_HYPNA (ATP synthase subunit beta OS=Hyphomonas neptunium (strain ATCC 15444) GN=atpD PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 5.978e-45
Identity = 85/113 (75.22%), Postives = 99/113 (87.61%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 339
            MD TEGLVRGQ V + G+PITVPVG  TLGRIMNVIGEPIDE+G +  + Y+PIH +APAFV+QATE ++LVTGIKV+DLL PY +GGKIGLFGGAGVGKTVLIMEL+NN+AK
Sbjct:   61 MDSTEGLVRGQPVSDIGTPITVPVGPATLGRIMNVIGEPIDERGPVNADTYMPIHAQAPAFVDQATESEVLVTGIKVIDLLCPYAKGGKIGLFGGAGVGKTVLIMELVNNIAK 173          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_RHORU (ATP synthase subunit beta OS=Rhodospirillum rubrum GN=atpD PE=1 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 1.020e-44
Identity = 86/115 (74.78%), Postives = 97/115 (84.35%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ+V +TG PITVPVG   LGRIMNVIGEP+DE+G + T    PIHR+AP F EQATE +ILVTGIKV+DL+APY +GGK+GLFGGAGVGKTVLI ELINNVAK H
Sbjct:   59 MDSTEGLVRGQQVTSTGGPITVPVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIAPYTKGGKVGLFGGAGVGKTVLIQELINNVAKGH 173          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_RHORT (ATP synthase subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpD PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.020e-44
Identity = 86/115 (74.78%), Postives = 97/115 (84.35%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ+V +TG PITVPVG   LGRIMNVIGEP+DE+G + T    PIHR+AP F EQATE +ILVTGIKV+DL+APY +GGK+GLFGGAGVGKTVLI ELINNVAK H
Sbjct:   59 MDSTEGLVRGQQVTSTGGPITVPVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIAPYTKGGKVGLFGGAGVGKTVLIQELINNVAKGH 173          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_HEMPU (ATP synthase subunit beta, mitochondrial OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.020e-44
Identity = 87/115 (75.65%), Postives = 100/115 (86.96%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MDGTEGL+RGQ+ ++TGSPI++PVG  TLGRI+NVIGEPIDE+G + T+    IH EAP FVE +  Q+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  108 MDGTEGLIRGQKCVDTGSPISIPVGPETLGRIINVIGEPIDERGPIGTDRRSAIHAEAPEFVEMSVNQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 222          
The following BLAST results are available for this feature:
BLAST of FC930380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RHIL35.407e-4679.13ATP synthase subunit beta OS=Rhizobium leguminosar... [more]
ATPB_RHILW9.223e-4679.13ATP synthase subunit beta OS=Rhizobium leguminosar... [more]
ATPB_RHISN1.205e-4578.26ATP synthase subunit beta OS=Rhizobium sp. (strain... [more]
ATPB_CAEEL2.055e-4577.39ATP synthase subunit beta, mitochondrial OS=Caenor... [more]
ATPB_DROME2.684e-4577.39ATP synthase subunit beta, mitochondrial OS=Drosop... [more]
ATPB_NEUCR4.578e-4574.78ATP synthase subunit beta, mitochondrial OS=Neuros... [more]
ATPB_HYPNA5.978e-4575.22ATP synthase subunit beta OS=Hyphomonas neptunium ... [more]
ATPB_RHORU1.020e-4474.78ATP synthase subunit beta OS=Rhodospirillum rubrum... [more]
ATPB_RHORT1.020e-4474.78ATP synthase subunit beta OS=Rhodospirillum rubrum... [more]
ATPB_HEMPU1.020e-4475.65ATP synthase subunit beta, mitochondrial OS=Hemice... [more]

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Properties
Property NameValue
Genbank descriptionC34006H10EF PostHarvC1 Citrus clementina cDNA clone C34006H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930380 ID=FC930380; Name=FC930380; organism=Citrus clementina; type=EST; length=347bp
ATGGATGGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGG
CTCTCCAATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGA
ATGTCATTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACAT
TACTTGCCCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGA
ACAACAGATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCAT
ACCAAAGAGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAA
ACTGTGCTTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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