FC930380

Overview
NameFC930380
Unique NameFC930380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length347
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_YEAST (ATP synthase subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=ATP2 PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 1.739e-44
Identity = 86/115 (74.78%), Postives = 100/115 (86.96%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MDGTEGLVRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++   PIH + P+F EQ+T  +IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAH
Sbjct:   97 MDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAH 211
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_SCHPO (ATP synthase subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=atp2 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.272e-44
Identity = 86/115 (74.78%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MDGTEGLVRG  V++TGSPI++PVG  TLGRIMNVIGEP+DE+G +K   Y PIH +AP+F EQ+T  +IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAH
Sbjct:  110 MDGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAH 224
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPA (ATP synthase subunit beta OS=Rhodopseudomonas palustris GN=atpD PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.272e-44
Identity = 87/115 (75.65%), Postives = 101/115 (87.83%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ V +TG+PI+VPVG  TLGRIMNVIGEP+DE+G +K+E    IH+EAPA+ +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVA+AH
Sbjct:   61 MDTTEGLVRGQEVTDTGAPISVPVGAGTLGRIMNVIGEPVDEQGPIKSEGLRAIHQEAPAYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVARAH 175
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_PELUB (ATP synthase subunit beta OS=Pelagibacter ubique GN=atpD PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.272e-44
Identity = 89/115 (77.39%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGL RG  V  TG+PI VPVG  TLGRI+NVIGEPIDEKG++KT+   PIHR AP F +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   56 MDATEGLKRGDEVTATGAPIQVPVGPETLGRIINVIGEPIDEKGEVKTKEKWPIHRAAPEFSDQSTETEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 170
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_OCHA4 (ATP synthase subunit beta OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=atpD PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.272e-44
Identity = 88/115 (76.52%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRG  V +TG+PI VPVG  TLGRIMNVIGEP+DE G +KT     IH+EAP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  102 MDSTEGLVRGHEVRDTGNPIMVPVGEETLGRIMNVIGEPVDEAGPIKTTARRAIHQEAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 216
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_AGRT5 (ATP synthase subunit beta OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=atpD PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.967e-44
Identity = 89/115 (77.39%), Postives = 99/115 (86.09%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE G + T     IH++AP++VEQ+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   69 MDSTEGLVRGQSVADTGAPIEVPVGLETLGRIMNVIGEPVDEAGPIVTAKKRAIHQDAPSYVEQSTEGQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 183
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_NITWN (ATP synthase subunit beta OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=atpD PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.875e-44
Identity = 87/115 (75.65%), Postives = 99/115 (86.09%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE+G +K +   PIH EAP++ +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:   61 MDTTEGLVRGQDVTDTGAPIRVPVGAGTLGRIMNVIGEPVDEQGPVKADDLRPIHAEAPSYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAH 175
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_RHOP5 (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisA53) GN=atpD PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.610e-44
Identity = 88/115 (76.52%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ V +TGSPI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:   61 MDTTEGLVRGQEVTDTGSPIMVPVGLGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPLYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAH 175
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB1_RHOS4 (ATP synthase subunit beta 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.610e-44
Identity = 87/115 (75.65%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRG RV +TGSPI+VPVG  TLGRI+NVIGEPIDEKGDL       IH+ AP F EQ+T  +ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   59 MDATEGLVRGARVTDTGSPISVPVGDATLGRILNVIGEPIDEKGDLGEASTRAIHQPAPTFAEQSTTSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVH 173
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB1_RHOS1 (ATP synthase subunit beta 1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.610e-44
Identity = 87/115 (75.65%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRG RV +TGSPI+VPVG  TLGRI+NVIGEPIDEKGDL       IH+ AP F EQ+T  +ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   59 MDATEGLVRGARVTDTGSPISVPVGDATLGRILNVIGEPIDEKGDLGEASTRAIHQPAPTFAEQSTTSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVH 173
The following BLAST results are available for this feature:
BLAST of FC930380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_YEAST1.739e-4474.78ATP synthase subunit beta, mitochondrial OS=Saccha... [more]
ATPB_SCHPO2.272e-4474.78ATP synthase subunit beta, mitochondrial OS=Schizo... [more]
ATPB_RHOPA2.272e-4475.65ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_PELUB2.272e-4477.39ATP synthase subunit beta OS=Pelagibacter ubique G... [more]
ATPB_OCHA42.272e-4476.52ATP synthase subunit beta OS=Ochrobactrum anthropi... [more]
ATPB_AGRT52.967e-4477.39ATP synthase subunit beta OS=Agrobacterium tumefac... [more]
ATPB_NITWN3.875e-4475.65ATP synthase subunit beta OS=Nitrobacter winograds... [more]
ATPB_RHOP56.610e-4476.52ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB1_RHOS46.610e-4475.65ATP synthase subunit beta 1 OS=Rhodobacter sphaero... [more]
ATPB1_RHOS16.610e-4475.65ATP synthase subunit beta 1 OS=Rhodobacter sphaero... [more]

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Properties
Property NameValue
Genbank descriptionC34006H10EF PostHarvC1 Citrus clementina cDNA clone C34006H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930380 ID=FC930380; Name=FC930380; organism=Citrus clementina; type=EST; length=347bp
ATGGATGGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGG
CTCTCCAATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGA
ATGTCATTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACAT
TACTTGCCCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGA
ACAACAGATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCAT
ACCAAAGAGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAA
ACTGTGCTTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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