FC930380

Overview
NameFC930380
Unique NameFC930380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length347
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPS (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB5) GN=atpD PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.633e-44
Identity = 88/115 (76.52%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ V +TGSPI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:   61 MDTTEGLVRGQEVTDTGSPIMVPVGIGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPLYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAH 175
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_OLICO (ATP synthase subunit beta OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=atpD PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.633e-44
Identity = 87/115 (75.65%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ V +TG+PI VPVG  TLGRIMNV+GEP+DE G +K +    IH+EAPA+ EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:   61 MDTTEGLVRGQEVTDTGAPIKVPVGEGTLGRIMNVVGEPVDEGGPVKADGTRAIHQEAPAYTEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAH 175
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_BRAJA (ATP synthase subunit beta OS=Bradyrhizobium japonicum GN=atpD PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.633e-44
Identity = 88/115 (76.52%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ V +TGSPI VPVG  TLGRI+NVIGEPIDE G +K+E    IH+EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAH
Sbjct:   58 MDTTEGLVRGQEVTDTGSPIRVPVGEGTLGRIINVIGEPIDEAGPVKSEGLRAIHQEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAH 172
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_RICFE (ATP synthase subunit beta OS=Rickettsia felis GN=atpD PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 1.127e-43
Identity = 86/115 (74.78%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRG  V++TGSPI +PVG  TLGRIMNV+GEPID KGD+K+ +   I++ AP F  Q+TE+ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   60 MDSTEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKSAPDFTNQSTERNILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAH 174
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_BRUSU (ATP synthase subunit beta OS=Brucella suis GN=atpD PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.127e-43
Identity = 87/115 (75.65%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  106 MDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_BRUSI (ATP synthase subunit beta OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=atpD PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.127e-43
Identity = 87/115 (75.65%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  106 MDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_BRUO2 (ATP synthase subunit beta OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=atpD PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.127e-43
Identity = 87/115 (75.65%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  106 MDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_BRUME (ATP synthase subunit beta OS=Brucella melitensis GN=atpD PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.127e-43
Identity = 87/115 (75.65%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  106 MDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_BRUC2 (ATP synthase subunit beta OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=atpD PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.127e-43
Identity = 87/115 (75.65%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  106 MDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
[Close]
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_BRUAB (ATP synthase subunit beta OS=Brucella abortus GN=atpD PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.127e-43
Identity = 87/115 (75.65%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:  106 MDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
The following BLAST results are available for this feature:
BLAST of FC930380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RHOPS8.633e-4476.52ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_OLICO8.633e-4475.65ATP synthase subunit beta OS=Oligotropha carboxido... [more]
ATPB_BRAJA8.633e-4476.52ATP synthase subunit beta OS=Bradyrhizobium japoni... [more]
ATPB_RICFE1.127e-4374.78ATP synthase subunit beta OS=Rickettsia felis GN=a... [more]
ATPB_BRUSU1.127e-4375.65ATP synthase subunit beta OS=Brucella suis GN=atpD... [more]
ATPB_BRUSI1.127e-4375.65ATP synthase subunit beta OS=Brucella suis (strain... [more]
ATPB_BRUO21.127e-4375.65ATP synthase subunit beta OS=Brucella ovis (strain... [more]
ATPB_BRUME1.127e-4375.65ATP synthase subunit beta OS=Brucella melitensis G... [more]
ATPB_BRUC21.127e-4375.65ATP synthase subunit beta OS=Brucella canis (strai... [more]
ATPB_BRUAB1.127e-4375.65ATP synthase subunit beta OS=Brucella abortus GN=a... [more]

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Properties
Property NameValue
Genbank descriptionC34006H10EF PostHarvC1 Citrus clementina cDNA clone C34006H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930380 ID=FC930380; Name=FC930380; organism=Citrus clementina; type=EST; length=347bp
ATGGATGGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGG
CTCTCCAATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGA
ATGTCATTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACAT
TACTTGCCCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGA
ACAACAGATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCAT
ACCAAAGAGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAA
ACTGTGCTTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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