FC930380

Overview
NameFC930380
Unique NameFC930380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length347
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_SYNJB (ATP synthase subunit beta OS=Synechococcus sp. GN=atpD PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.476e-35
Identity = 68/115 (59.13%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            M  T+GLVRG  V++TG+PITVPVG+ TLGRI NV+GEP+D+   ++ + + PIHR AP  V+   + +   TGIKV+DLLAP+++GGK+GLFGGAGVGKTVLI ELI+N+A+ H
Sbjct:   70 MSSTDGLVRGMPVVDTGAPITVPVGQPTLGRIFNVLGEPVDQGEPVQAQEFAPIHRSAPPLVDLTIKPEPFETGIKVIDLLAPFKKGGKVGLFGGAGVGKTVLIQELIHNIAEEH 184          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_SYNFM (ATP synthase subunit beta OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=atpD PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.476e-35
Identity = 67/115 (58.26%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD T+GLVRG  V +TG+PI +PVG   LGR++NV+G  +D  G + T+ Y+PIHR APAF EQ T  ++L TG+KV+DLL P+ RGGK+G+FGGAGVGKTV++ME+I+N+A  H
Sbjct:   62 MDLTDGLVRGMPVKDTGNPIMMPVGAAVLGRVINVVGRTVDGLGPVNTDTYMPIHRTAPAFTEQDTSVKVLETGVKVIDLLVPFPRGGKMGMFGGAGVGKTVVMMEMIHNIAMQH 176          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_SHEAM (ATP synthase subunit beta OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=atpD PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.476e-35
Identity = 71/115 (61.74%), Postives = 89/115 (77.39%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            M  ++GL RG  V NTGS I VPVG+ TLGRIMNV+GEP+DE G +  E    IHR AP++ EQ+   ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELINN+AKAH
Sbjct:   59 MGSSDGLRRGIEVENTGSAIAVPVGKATLGRIMNVLGEPVDEAGPIGEEDRYVIHRAAPSYEEQSNTTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAH 173          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_COXBU (ATP synthase subunit beta OS=Coxiella burnetii GN=atpD PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.476e-35
Identity = 73/115 (63.48%), Postives = 88/115 (76.52%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            M  TEGL R   V NT  PI VPVG+ TLGRIMNV+GEPIDE G + ++  LPIHR AP+F+EQ+   ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:   58 MGSTEGLKRDIAVKNTEKPIEVPVGKETLGRIMNVLGEPIDELGPINSKEKLPIHRPAPSFIEQSGATELLETGIKVVDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 172          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_COXBR (ATP synthase subunit beta OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=atpD PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.476e-35
Identity = 73/115 (63.48%), Postives = 88/115 (76.52%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            M  TEGL R   V NT  PI VPVG+ TLGRIMNV+GEPIDE G + ++  LPIHR AP+F+EQ+   ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:   58 MGSTEGLKRDIAVKNTEKPIEVPVGKETLGRIMNVLGEPIDELGPINSKEKLPIHRPAPSFIEQSGTTELLETGIKVVDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 172          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_COXBN (ATP synthase subunit beta OS=Coxiella burnetii (strain Dugway 5J108-111) GN=atpD PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.476e-35
Identity = 73/115 (63.48%), Postives = 88/115 (76.52%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            M  TEGL R   V NT  PI VPVG+ TLGRIMNV+GEPIDE G + ++  LPIHR AP+F+EQ+   ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:   58 MGSTEGLKRDIAVKNTEKPIEVPVGKETLGRIMNVLGEPIDELGPINSKEKLPIHRPAPSFIEQSGATELLETGIKVVDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 172          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_VIBFM (ATP synthase subunit beta OS=Vibrio fischeri (strain MJ11) GN=atpD PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.928e-35
Identity = 70/115 (60.87%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            M  ++GL RG  V NTG+PI+VPVG  TLGRIMNV+G+ IDE GD+  E +  IHREAP++ EQ+   ++L TG+KV+DL+ P+ +GGKIGLFGGAGVGKTV +MELINN+A  H
Sbjct:   57 MGSSDGLRRGLTVENTGAPISVPVGTKTLGRIMNVLGDAIDECGDIDAEEHYAIHREAPSYEEQSNSTELLETGVKVIDLVCPFAKGGKIGLFGGAGVGKTVNMMELINNIALQH 171          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_VIBF1 (ATP synthase subunit beta OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=atpD PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.928e-35
Identity = 70/115 (60.87%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            M  ++GL RG  V NTG+PI+VPVG  TLGRIMNV+G+ IDE GD+  E +  IHREAP++ EQ+   ++L TG+KV+DL+ P+ +GGKIGLFGGAGVGKTV +MELINN+A  H
Sbjct:   57 MGSSDGLRRGLTVENTGAPISVPVGTKTLGRIMNVLGDAIDECGDIDAEEHYAIHREAPSYEEQSNSTELLETGVKVIDLVCPFAKGGKIGLFGGAGVGKTVNMMELINNIALQH 171          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_CHLL2 (ATP synthase subunit beta OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=atpD PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.928e-35
Identity = 72/113 (63.72%), Postives = 87/113 (76.99%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 339
            M+ T+GLVRG  V+NTG  I VPVG   LGR++NV+GEPID KG + T+    IHR AP F + +T+ ++  TGIKV+DLL PY RGGK GLFGGAGVGKTVLIMELINN+AK
Sbjct:   58 MESTDGLVRGLSVVNTGKSIQVPVGSEVLGRMLNVVGEPIDGKGAVNTKKTYSIHRSAPKFEDLSTKAEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVLIMELINNIAK 170          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_BACWK (ATP synthase subunit beta OS=Bacillus weihenstephanensis (strain KBAB4) GN=atpD PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.928e-35
Identity = 76/116 (65.52%), Postives = 91/116 (78.45%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            M  T+GLVRG  V +TG  I+VPVG VTLGR+ NV+G+ ID  GD+  +    PIHR+APAF E +T+ +IL TGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINN+A+ H
Sbjct:   62 MSSTDGLVRGTEVEDTGKAISVPVGDVTLGRVFNVLGDAIDLDGDVPADVRRDPIHRQAPAFEELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEH 177          
The following BLAST results are available for this feature:
BLAST of FC930380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_SYNJB1.476e-3559.13ATP synthase subunit beta OS=Synechococcus sp. GN=... [more]
ATPB_SYNFM1.476e-3558.26ATP synthase subunit beta OS=Syntrophobacter fumar... [more]
ATPB_SHEAM1.476e-3561.74ATP synthase subunit beta OS=Shewanella amazonensi... [more]
ATPB_COXBU1.476e-3563.48ATP synthase subunit beta OS=Coxiella burnetii GN=... [more]
ATPB_COXBR1.476e-3563.48ATP synthase subunit beta OS=Coxiella burnetii (st... [more]
ATPB_COXBN1.476e-3563.48ATP synthase subunit beta OS=Coxiella burnetii (st... [more]
ATPB_VIBFM1.928e-3560.87ATP synthase subunit beta OS=Vibrio fischeri (stra... [more]
ATPB_VIBF11.928e-3560.87ATP synthase subunit beta OS=Vibrio fischeri (stra... [more]
ATPB_CHLL21.928e-3563.72ATP synthase subunit beta OS=Chlorobium limicola (... [more]
ATPB_BACWK1.928e-3565.52ATP synthase subunit beta OS=Bacillus weihenstepha... [more]

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Properties
Property NameValue
Genbank descriptionC34006H10EF PostHarvC1 Citrus clementina cDNA clone C34006H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930380 ID=FC930380; Name=FC930380; organism=Citrus clementina; type=EST; length=347bp
ATGGATGGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGG
CTCTCCAATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGA
ATGTCATTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACAT
TACTTGCCCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGA
ACAACAGATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCAT
ACCAAAGAGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAA
ACTGTGCTTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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