FC930380

Overview
NameFC930380
Unique NameFC930380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length347
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_CARHZ (ATP synthase subunit beta OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=atpD PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.055e-41
Identity = 77/115 (66.96%), Postives = 97/115 (84.35%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            M  T+GLVRG +V++TG+PITVPVGR  LGR++NV+GEPID KG ++++HY PIHR AP   EQ+T  +IL TGIKV+DLL P+ +GGKIGLFGGAGVGKTV++MELINN+AK H
Sbjct:   65 MSSTDGLVRGMKVVDTGAPITVPVGRPVLGRLLNVLGEPIDGKGPVESDHYYPIHRPAPPLEEQSTRAEILETGIKVIDLLVPFLKGGKIGLFGGAGVGKTVIVMELINNIAKQH 179          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_AZOC5 (ATP synthase subunit beta OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=atpD PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.055e-41
Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRGQ V +TG PI VPVG  TLGRIMNVIGE +DE G +  E    IH++AP++ EQ+TE ++LVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   58 MDSTEGLVRGQAVEDTGGPIMVPVGEATLGRIMNVIGEAVDELGPVVGEAKRAIHQQAPSYSEQSTEAEMLVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKAH 172          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_SCEOB (ATP synthase subunit beta, chloroplastic OS=Scenedesmus obliquus GN=atpB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.378e-41
Identity = 82/115 (71.30%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            M+ T+GL+RG  VL+TG P+ VPVG+ TLGRI NV+GEP+D  G +K E  LPIHR APAFV+  T   I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   68 MNPTDGLMRGMEVLDTGKPLNVPVGKSTLGRIFNVLGEPVDNLGPVKNEESLPIHRTAPAFVDLDTRLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 182          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_JANSC (ATP synthase subunit beta OS=Jannaschia sp. (strain CCS1) GN=atpD PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.378e-41
Identity = 81/115 (70.43%), Postives = 95/115 (82.61%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD +EGLVRGQ V +T  PITVPVG  TLGRI+NV+GEP+DE G +  E    IH++AP F +Q+TE ++LVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   58 MDSSEGLVRGQEVTDTDGPITVPVGPGTLGRILNVVGEPVDEGGPVDAEERRGIHQDAPEFADQSTEAEVLVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVH 172          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_ACICJ (ATP synthase subunit beta OS=Acidiphilium cryptum (strain JF-5) GN=atpD PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.378e-41
Identity = 83/115 (72.17%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD T+GL RG  V +TG  I VPVG  TLGRI+NVIGEPIDE+G + T    PIHR+AP+F EQAT  +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK H
Sbjct:   59 MDSTDGLARGDEVRDTGEAIAVPVGPETLGRILNVIGEPIDERGPIPTTRTAPIHRQAPSFDEQATSAEILVTGIKVVDLLAPYLKGGKIGLFGGAGVGKTVLIQELINNIAKGH 173          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_SPHWW (ATP synthase subunit beta OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpD PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.800e-41
Identity = 82/115 (71.30%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD T+GL RGQ V +TGS I VPVG  TLGRI+NVIGEPIDE+G +      PIH EAP FV+Q+T+  ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK H
Sbjct:   63 MDATDGLTRGQEVTDTGSQIRVPVGPQTLGRILNVIGEPIDERGPVNATQTSPIHAEAPLFVDQSTDASILVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGH 177          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_SILPO (ATP synthase subunit beta OS=Silicibacter pomeroyi GN=atpD PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.800e-41
Identity = 82/115 (71.30%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRG  V +TG PI+VPVG  TLGRI+NVIGEP+DEKG +       IH+ AP+F EQ+T   ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   58 MDATEGLVRGAVVTDTGGPISVPVGAATLGRILNVIGEPVDEKGPVNATETRAIHQPAPSFDEQSTSSDILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVH 172          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_RHOS5 (ATP synthase subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpD PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.070e-41
Identity = 82/115 (71.30%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD TEGLVRG  V + G PI+VPVG  TLGRI+NVIGEPIDEKG +  +    IH+ AP F EQ+T  +ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   59 MDATEGLVRGAPVTDLGGPISVPVGDATLGRILNVIGEPIDEKGPVSGDSTRAIHQPAPTFAEQSTTSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVH 173          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB_GRABC (ATP synthase subunit beta OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpD PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.070e-41
Identity = 84/115 (73.04%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD T+GLVRG  V + G PITVPVG  TLGRI+NVIGEPIDE+G +  +    IHREAP+F EQA   +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AKAH
Sbjct:   59 MDSTDGLVRGAEVEDLGRPITVPVGPGTLGRILNVIGEPIDERGPVDAKKTYSIHREAPSFEEQAASAEILVTGIKVVDLLAPYLKGGKIGLFGGAGVGKTVLIQELINNIAKAH 173          
BLAST of FC930380 vs. ExPASy Swiss-Prot
Match: ATPB3_PELCD (ATP synthase subunit beta 3 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=atpD3 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.070e-41
Identity = 82/115 (71.30%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 345
            MD T+GLVRGQ VLNTG  I+VPVGR TLGRI+NVIGEP+DE+G ++T+    IHR  P FV+Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELI+N+AK H
Sbjct:   62 MDSTDGLVRGQEVLNTGRQISVPVGRGTLGRILNVIGEPVDEQGPVETDTTWEIHRPTPEFVDQSTKVEAFETGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELIHNIAKKH 176          
The following BLAST results are available for this feature:
BLAST of FC930380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_CARHZ1.055e-4166.96ATP synthase subunit beta OS=Carboxydothermus hydr... [more]
ATPB_AZOC51.055e-4173.04ATP synthase subunit beta OS=Azorhizobium caulinod... [more]
ATPB_SCEOB1.378e-4171.30ATP synthase subunit beta, chloroplastic OS=Scened... [more]
ATPB_JANSC1.378e-4170.43ATP synthase subunit beta OS=Jannaschia sp. (strai... [more]
ATPB_ACICJ1.378e-4172.17ATP synthase subunit beta OS=Acidiphilium cryptum ... [more]
ATPB_SPHWW1.800e-4171.30ATP synthase subunit beta OS=Sphingomonas wittichi... [more]
ATPB_SILPO1.800e-4171.30ATP synthase subunit beta OS=Silicibacter pomeroyi... [more]
ATPB_RHOS53.070e-4171.30ATP synthase subunit beta OS=Rhodobacter sphaeroid... [more]
ATPB_GRABC3.070e-4173.04ATP synthase subunit beta OS=Granulibacter bethesd... [more]
ATPB3_PELCD3.070e-4171.30ATP synthase subunit beta 3 OS=Pelobacter carbinol... [more]

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Properties
Property NameValue
Genbank descriptionC34006H10EF PostHarvC1 Citrus clementina cDNA clone C34006H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930380 ID=FC930380; Name=FC930380; organism=Citrus clementina; type=EST; length=347bp
ATGGATGGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGG
CTCTCCAATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGA
ATGTCATTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACAT
TACTTGCCCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGA
ACAACAGATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCAT
ACCAAAGAGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAA
ACTGTGCTTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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