FC930382

Overview
NameFC930382
Unique NameFC930382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length307
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig794 contig Ccv1_Contig794:10..316. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_LITCN (S-adenosylmethionine synthetase OS=Litchi chinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.158e-50
Identity = 95/102 (93.14%), Postives = 100/102 (98.04%), Query Frame = 1 
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVD+Y TGKIPD+EIL+IVKENFDFRPGMI++NLDLKRGGN RFLKTAAYGHFGREDPD
Sbjct:  276 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDREILKIVKENFDFRPGMISVNLDLKRGGNGRFLKTAAYGHFGREDPD 377
[Close]
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK1_CATRO (S-adenosylmethionine synthetase 1 OS=Catharanthus roseus GN=SAMS1 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.158e-50
Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = 1 
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            TKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVDTY TGKIPDKEIL+IVKENFDFRPGMIAINLDLKRGG+ RFLKTAAYGHFGR+DPD
Sbjct:  276 TKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGSGRFLKTAAYGHFGRDDPD 377
[Close]
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK2_VITVI (S-adenosylmethionine synthetase 2 OS=Vitis vinifera GN=METK2 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.065e-49
Identity = 95/102 (93.14%), Postives = 100/102 (98.04%), Query Frame = 1 
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            TKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVDTY TGKIPD+EIL+IVKENFDFRPGMI+INLDLKRGGN RFLKTAAYGHFGR+DPD
Sbjct:  276 TKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 377
[Close]
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK1_PETCR (S-adenosylmethionine synthetase 1 (Fragment) OS=Petroselinum crispum GN=SMS-1 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.065e-49
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTY TGKIPD+EIL+IVKE FDFRPGMI+INLDLKRGGN RFLKTAAYGHFGREDPD
Sbjct:  119 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGREDPD 220
[Close]
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK1_SOLLC (S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.392e-49
Identity = 95/102 (93.14%), Postives = 100/102 (98.04%), Query Frame = 1 
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTY TGKIPD+EIL+IVKENFDFRPGM++INLDLKRGGN RFLKTAAYGHFGR+DPD
Sbjct:  276 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKENFDFRPGMMSINLDLKRGGNRRFLKTAAYGHFGRDDPD 377
[Close]
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_MEDTR (S-adenosylmethionine synthetase OS=Medicago truncatula GN=METK PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.374e-49
Identity = 94/102 (92.16%), Postives = 100/102 (98.04%), Query Frame = 1 
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            TKVDRSGAY+VRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+Y TGKIPD+EIL+IVKENFDFRPGMI INLDLKRGGNSRFLKTAAYGHFGR+DPD
Sbjct:  277 TKVDRSGAYVVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDREILQIVKENFDFRPGMITINLDLKRGGNSRFLKTAAYGHFGRDDPD 378
[Close]
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK2_POPTR (S-adenosylmethionine synthetase 2 OS=Populus trichocarpa GN=METK2 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.100e-49
Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 1 
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTY TGKIPDKEIL IVKE FDFRPGMIAI+LDLKRGGN RFLKTAAYGHFGR+DPD
Sbjct:  276 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILNIVKEKFDFRPGMIAISLDLKRGGNGRFLKTAAYGHFGRDDPD 377
[Close]
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_GOSHI (S-adenosylmethionine synthetase OS=Gossypium hirsutum GN=SAMS PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.049e-49
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            TKVDRSGAYIVRQAAKSIVA+GLARRC+VQVSYAIGVPEPLSVFVDTY TGKIPDKEIL+IVKE FDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGR+D D
Sbjct:  276 TKVDRSGAYIVRQAAKSIVANGLARRCVVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRDDTD 377
[Close]
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK2_PETCR (S-adenosylmethionine synthetase 2 (Fragment) OS=Petroselinum crispum GN=SMS-2 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.049e-49
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVD+Y TGKIPD+EIL+IVKE FDFRPGMI+INLDLKRGGN RFLKTAAYGHFGREDPD
Sbjct:   30 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDREILQIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGREDPD 131
[Close]
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK2_ELAUM (S-adenosylmethionine synthetase 2 OS=Elaeagnus umbellata GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.049e-49
Identity = 94/102 (92.16%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            TKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVP+PLSVFVD+Y TGKIPDKEIL+IVKENFDFRPGMI INLDLKRGGN RFLKTAAYGHFGR+DPD
Sbjct:  276 TKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPDPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMITINLDLKRGGNDRFLKTAAYGHFGRDDPD 377
The following BLAST results are available for this feature:
BLAST of FC930382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_LITCN8.158e-5093.14S-adenosylmethionine synthetase OS=Litchi chinensi... [more]
METK1_CATRO8.158e-5094.12S-adenosylmethionine synthetase 1 OS=Catharanthus ... [more]
METK2_VITVI1.065e-4993.14S-adenosylmethionine synthetase 2 OS=Vitis vinifer... [more]
METK1_PETCR1.065e-4994.12S-adenosylmethionine synthetase 1 (Fragment) OS=Pe... [more]
METK1_SOLLC1.392e-4993.14S-adenosylmethionine synthetase 1 OS=Solanum lycop... [more]
METK_MEDTR2.374e-4992.16S-adenosylmethionine synthetase OS=Medicago trunca... [more]
METK2_POPTR3.100e-4994.12S-adenosylmethionine synthetase 2 OS=Populus trich... [more]
METK_GOSHI4.049e-4993.14S-adenosylmethionine synthetase OS=Gossypium hirsu... [more]
METK2_PETCR4.049e-4993.14S-adenosylmethionine synthetase 2 (Fragment) OS=Pe... [more]
METK2_ELAUM4.049e-4992.16S-adenosylmethionine synthetase 2 OS=Elaeagnus umb... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34007A01EF PostHarvC1 Citrus clementina cDNA clone C34007A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930382 ID=FC930382; Name=FC930382; organism=Citrus clementina; type=EST; length=307bp
ACCAAGGTTGATAGAAGTGGTGCTTACATTGTGAGGCAGGCAGCAAAGAG
CATCGTTGCCAGTGGCCTTGCTCGCCGCTGCATTGTGCAGGTTTCTTATG
CTATTGGTGTCCCAGAGCCCCTTTCAGTGTTTGTTGACACTTATCGAACT
GGAAAGATTCCGGACAAGGAGATCCTGAGGATTGTGAAGGAGAACTTTGA
TTTCAGGCCTGGAATGATTGCCATTAACTTGGATCTCAAGAGGGGAGGAA
ATAGCAGGTTTTTGAAGACTGCTGCATATGGGCATTTTGGAAGGGAGGAT
CCTGACT
back to top