FC930382

Overview
NameFC930382
Unique NameFC930382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length307
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig794 contig Ccv1_Contig794:10..316. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_ACTP2 (S-adenosylmethionine synthetase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=metK PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.665e-21
Identity = 49/99 (49.49%), Postives = 72/99 (72.73%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRE 297
            +KVDRS AY  R  AK+IVA+GLA RC +Q+SYAIGV +P S+ V+T+ TG++ ++ +++++ +NFD RP  +   LDL +     + +TAAYGHFGRE
Sbjct:  269 SKVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGRVSNETLVKLIYQNFDLRPYGLIKMLDLIQ---PIYRETAAYGHFGRE 364          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_SALAI (S-adenosylmethionine synthetase OS=Salinispora arenicola (strain CNS-205) GN=metK PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.092e-21
Identity = 53/102 (51.96%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            +KVDRS AY +R  AK++VA+GLA RC  QV+YAIG   P+S+FV+T+ T  +P + I + V E FD RP  I  +L L R     + +TAAYGHFGRE PD
Sbjct:  283 SKVDRSAAYAMRWVAKNVVAAGLAERCEAQVAYAIGKAHPVSLFVETFGTETVPVERIEKAVTEVFDLRPAAIIRDLQLLR---PIYSQTAAYGHFGRELPD 381          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_SALTO (S-adenosylmethionine synthetase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=metK PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.957e-21
Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            +KVDRS AY +R  AK++VA+GLA RC  QV+YAIG   P+S+F++T+ T  +P + I + V E FD RP  I  +L L R     + +TAAYGHFGRE PD
Sbjct:  283 SKVDRSAAYAMRWVAKNVVAAGLAERCEAQVAYAIGKAHPVSLFIETFGTETVPVERIEKAVTEVFDLRPAAIIRDLKLTR---PIYSQTAAYGHFGRELPD 381          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_SALAR (S-adenosylmethionine synthetase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=metK PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.957e-21
Identity = 52/100 (52.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRED 300
            +KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+T+ T K+  +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGRE+
Sbjct:  269 SKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVSSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGREN 365          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_RHILO (S-adenosylmethionine synthetase OS=Rhizobium loti GN=metK PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.957e-21
Identity = 55/102 (53.92%), Postives = 68/102 (66.67%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            +KVDRS AY  R  AK+IVASGLA  C VQ++YAIGV  P+SV V+T+ T +I +K I  +V E FD RP  I   LDL R     +  TA YGHFGRE+P+
Sbjct:  272 SKVDRSAAYAARYVAKNIVASGLAEVCEVQLAYAIGVASPVSVMVNTFGTARIEEKRIECLVLELFDLRPKGIIKMLDLVR---PIYRNTATYGHFGREEPE 370          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_MYCMS (S-adenosylmethionine synthetase OS=Mycoplasma mycoides subsp. mycoides SC GN=metK PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.957e-21
Identity = 49/100 (49.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRED 300
            TKVDRS AY+ R  AK++VA+GLA +  +QVSYAIG+ +P+S+F++T+ T K+    I + V ENFDF    +   LDLK+     F KT+ YGHFG++D
Sbjct:  272 TKVDRSAAYMCRYVAKNLVAAGLADKIEIQVSYAIGISQPISIFIETFNTHKVDLNTIYKAVYENFDFSVSSMIKTLDLKK---PIFFKTSKYGHFGKKD 368          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_MYCCT (S-adenosylmethionine synthetase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=metK PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.957e-21
Identity = 49/100 (49.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRED 300
            TKVDRS AY+ R  AK++VA+GLA +  +QVSYAIG+ +P+S+F++T+ T K+    I + V ENFDF    +   LDLK+     F KT+ YGHFG++D
Sbjct:  272 TKVDRSAAYMCRYVAKNLVAAGLADKIEIQVSYAIGISQPISIFIETFNTHKVDLNTIYKAVYENFDFSVSSMIKTLDLKK---PIFFKTSKYGHFGKKD 368          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_LEGPC (S-adenosylmethionine synthetase OS=Legionella pneumophila (strain Corby) GN=metK PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.957e-21
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRED 300
            +KVDRS AY  R  AK+IVA+GLA +C +Q+SYAIGV EP S+FVDT+ TG++ + EI+ ++  +FD  P  I    DL R     + +TA YGH+GRE+
Sbjct:  270 SKVDRSAAYAARHVAKNIVAAGLADKCELQISYAIGVAEPTSIFVDTFGTGRLKNSEIIDLIHTHFDLTPQGIIDQHDLLR---PIYRQTATYGHYGREN 366          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_LEGPA (S-adenosylmethionine synthetase OS=Legionella pneumophila (strain Paris) GN=metK PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.957e-21
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRED 300
            +KVDRS AY  R  AK+IVA+GLA +C +Q+SYAIGV EP S+FVDT+ TG++ + EI+ ++  +FD  P  I    DL R     + +TA YGH+GRE+
Sbjct:  270 SKVDRSAAYAARHVAKNIVAAGLADKCELQISYAIGVAEPTSIFVDTFGTGRLKNSEIIDLIHTHFDLTPQGIIDQHDLLR---PIYRQTATYGHYGREN 366          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_CLAMS (S-adenosylmethionine synthetase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=metK PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.957e-21
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            +KVDRS AY +R  AK+ VA+GLA R  VQV+YAIG   P+ ++V+ + T  +P+  I+R ++E FD RP  I   LDL R     + +TAAYGHFGRE PD
Sbjct:  287 SKVDRSAAYAMRWVAKNAVAAGLADRLEVQVAYAIGKAAPVGLYVEAFGTAHVPEDRIVRAIRETFDLRPAAIVERLDLLR---PIYAETAAYGHFGRELPD 385          
The following BLAST results are available for this feature:
BLAST of FC930382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_ACTP24.665e-2149.49S-adenosylmethionine synthetase OS=Actinobacillus ... [more]
METK_SALAI6.092e-2151.96S-adenosylmethionine synthetase OS=Salinispora are... [more]
METK_SALTO7.957e-2150.98S-adenosylmethionine synthetase OS=Salinispora tro... [more]
METK_SALAR7.957e-2152.00S-adenosylmethionine synthetase OS=Salmonella ariz... [more]
METK_RHILO7.957e-2153.92S-adenosylmethionine synthetase OS=Rhizobium loti ... [more]
METK_MYCMS7.957e-2149.00S-adenosylmethionine synthetase OS=Mycoplasma myco... [more]
METK_MYCCT7.957e-2149.00S-adenosylmethionine synthetase OS=Mycoplasma capr... [more]
METK_LEGPC7.957e-2150.00S-adenosylmethionine synthetase OS=Legionella pneu... [more]
METK_LEGPA7.957e-2150.00S-adenosylmethionine synthetase OS=Legionella pneu... [more]
METK_CLAMS7.957e-2150.00S-adenosylmethionine synthetase OS=Clavibacter mic... [more]

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Properties
Property NameValue
Genbank descriptionC34007A01EF PostHarvC1 Citrus clementina cDNA clone C34007A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930382 ID=FC930382; Name=FC930382; organism=Citrus clementina; type=EST; length=307bp
ACCAAGGTTGATAGAAGTGGTGCTTACATTGTGAGGCAGGCAGCAAAGAG
CATCGTTGCCAGTGGCCTTGCTCGCCGCTGCATTGTGCAGGTTTCTTATG
CTATTGGTGTCCCAGAGCCCCTTTCAGTGTTTGTTGACACTTATCGAACT
GGAAAGATTCCGGACAAGGAGATCCTGAGGATTGTGAAGGAGAACTTTGA
TTTCAGGCCTGGAATGATTGCCATTAACTTGGATCTCAAGAGGGGAGGAA
ATAGCAGGTTTTTGAAGACTGCTGCATATGGGCATTTTGGAAGGGAGGAT
CCTGACT
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