FC930382

Overview
NameFC930382
Unique NameFC930382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length307
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig794 contig Ccv1_Contig794:10..316. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_CHRVO (S-adenosylmethionine synthetase OS=Chromobacterium violaceum GN=metK PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.401e-25
Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            +KVDRS AY  R  AK+IVA+GLAR+C +QVSYAIGV EP S+ VDT+ T KIP+++I+ +VK++FD RP  I   LDL R     + KTAAYGHFGRE+P+
Sbjct:  273 SKVDRSAAYAGRYVAKNIVAAGLARQCQIQVSYAIGVAEPTSIAVDTFGTNKIPNEKIVELVKKHFDLRPKGIIQMLDLLR---PIYGKTAAYGHFGREEPE 371          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_CELJU (S-adenosylmethionine synthetase OS=Cellvibrio japonicus (strain Ueda107) GN=metK PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.830e-25
Identity = 58/102 (56.86%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            +KVDRS AY  R  AK+IVA+GLA +C +QVSYAIGV EP S+ ++T+ TGK+PD EI+++V+E+FD RP  +   L+LKR     + +TAAYGHFGRE PD
Sbjct:  270 SKVDRSAAYAGRYVAKNIVAAGLADKCEIQVSYAIGVAEPTSISINTFGTGKLPDAEIIKLVREHFDLRPRGLIEMLNLKR---PIYRQTAAYGHFGRELPD 368          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_ANATD (S-adenosylmethionine synthetase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=metK PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.830e-25
Identity = 61/102 (59.80%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            TKVDRS  Y  R  AK+IVASGLA++C VQVSYAIGV  PLS+ VDT+ TGKI D++I  IVK  FD RP  I  +L+L+R     + + AAYGHFGRED D
Sbjct:  279 TKVDRSATYAARYVAKNIVASGLAKKCEVQVSYAIGVARPLSIRVDTFGTGKISDEKIAEIVKRVFDLRPAAIIRDLNLRR---PIYKQVAAYGHFGREDLD 377          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_RALEH (S-adenosylmethionine synthetase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=metK PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.122e-25
Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            +KVDRS AY  R  AK++VASGLAR+C VQVSYAIGV  P++V V T  TGKIPD +I  +V+E+FD RP  I   LDL R     + KTAAYGHFGRE+P+
Sbjct:  271 SKVDRSAAYAARYVAKNVVASGLARQCQVQVSYAIGVARPINVTVYTEGTGKIPDAKIAELVQEHFDLRPKGIVQMLDLLR---PIYEKTAAYGHFGREEPE 369          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_STACT (S-adenosylmethionine synthetase OS=Staphylococcus carnosus (strain TM300) GN=metK PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.077e-25
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRED 300
            TKVDRS AY  R  AK+IVA+GLA +C VQ++YAIGV EP+S+ +DT+ TGK+P+ +++  V++NFD RP  I   LDLKR     + +TAAYGHFGR D
Sbjct:  282 TKVDRSAAYAARYVAKNIVAAGLADKCEVQLAYAIGVAEPVSISIDTFGTGKVPESKLVEAVRDNFDLRPAGIIKMLDLKR---PIYKQTAAYGHFGRTD 378          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_PELCD (S-adenosylmethionine synthetase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=metK PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.077e-25
Identity = 57/102 (55.88%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            +KVDRS +Y+ R  AK++VA+ LAR+C VQ++YAIGV EP+S+ V+T+ TG +P  EI RIV+E FD RP  I   LDL R     + KTAAYGHFGRE P+
Sbjct:  273 SKVDRSASYMARYVAKNVVAAKLARKCEVQIAYAIGVAEPVSIMVNTFGTGVLPSNEIARIVREEFDMRPAAIIETLDLLR---PIYRKTAAYGHFGRELPE 371          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_DECAR (S-adenosylmethionine synthetase OS=Dechloromonas aromatica (strain RCB) GN=metK PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.077e-25
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            +KVDRS AY  R  AK+IVA+GLA RC+VQVSYAIGV EP S+ V+TY TGK+ ++ +  +V+++FD RP  I   LDL R     + KTAAYGHFGR++P+
Sbjct:  271 SKVDRSAAYATRYVAKNIVAAGLASRCLVQVSYAIGVAEPTSIMVETYGTGKVSNETLTALVRKHFDLRPKGIVNMLDLLR---PIYQKTAAYGHFGRDEPE 369          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_COXBN (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=metK PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.077e-25
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            +KVDRSGAY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+T+ TGKI +    +++KE+FD RPG I   L+L R   S +  TA YGHFGRE+P+
Sbjct:  270 SKVDRSGAYAARYVAKNIVAGGLADRCEIQVSYAIGVAEPTSISVETFGTGKIDEVRTQQLIKEHFDLRPGKIIEELNLLR---SIYKATATYGHFGREEPE 368          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_POLSQ (S-adenosylmethionine synthetase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=metK PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.325e-25
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            +KVDRS AY  R  AK++VA+GLA +C++Q+SYAIGV +P SV V T+ TGKI D++I ++V ENFD RP  I   L+L R     + KTAAYGHFGRE+P+
Sbjct:  272 SKVDRSAAYAGRYVAKNVVAAGLASKCLIQISYAIGVAKPTSVMVSTFGTGKISDEKIAQLVSENFDLRPKGIVKMLNLLR---PIYRKTAAYGHFGREEPE 370          
BLAST of FC930382 vs. ExPASy Swiss-Prot
Match: METK_LARHH (S-adenosylmethionine synthetase OS=Laribacter hongkongensis (strain HLHK9) GN=metK PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.325e-25
Identity = 58/102 (56.86%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD 306
            +KVDRS AY  R  AK+IVA+GLAR+C +QVSYAIG+ EP S+ VDT+ T  IP+++I+ +VK +FD RP  I   LDL R     + KTAAYGHFGRE+P+
Sbjct:  273 SKVDRSAAYAGRYVAKNIVAAGLARQCQIQVSYAIGIAEPTSISVDTFGTNAIPNEKIVELVKRHFDLRPKGIIQMLDLLR---PIYTKTAAYGHFGREEPE 371          
The following BLAST results are available for this feature:
BLAST of FC930382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CHRVO1.401e-2558.82S-adenosylmethionine synthetase OS=Chromobacterium... [more]
METK_CELJU1.830e-2556.86S-adenosylmethionine synthetase OS=Cellvibrio japo... [more]
METK_ANATD1.830e-2559.80S-adenosylmethionine synthetase OS=Anaerocellum th... [more]
METK_RALEH3.122e-2559.80S-adenosylmethionine synthetase OS=Ralstonia eutro... [more]
METK_STACT4.077e-2556.00S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_PELCD4.077e-2555.88S-adenosylmethionine synthetase OS=Pelobacter carb... [more]
METK_DECAR4.077e-2555.88S-adenosylmethionine synthetase OS=Dechloromonas a... [more]
METK_COXBN4.077e-2556.86S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_POLSQ5.325e-2555.88S-adenosylmethionine synthetase OS=Polynucleobacte... [more]
METK_LARHH5.325e-2556.86S-adenosylmethionine synthetase OS=Laribacter hong... [more]

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Properties
Property NameValue
Genbank descriptionC34007A01EF PostHarvC1 Citrus clementina cDNA clone C34007A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930382 ID=FC930382; Name=FC930382; organism=Citrus clementina; type=EST; length=307bp
ACCAAGGTTGATAGAAGTGGTGCTTACATTGTGAGGCAGGCAGCAAAGAG
CATCGTTGCCAGTGGCCTTGCTCGCCGCTGCATTGTGCAGGTTTCTTATG
CTATTGGTGTCCCAGAGCCCCTTTCAGTGTTTGTTGACACTTATCGAACT
GGAAAGATTCCGGACAAGGAGATCCTGAGGATTGTGAAGGAGAACTTTGA
TTTCAGGCCTGGAATGATTGCCATTAACTTGGATCTCAAGAGGGGAGGAA
ATAGCAGGTTTTTGAAGACTGCTGCATATGGGCATTTTGGAAGGGAGGAT
CCTGACT
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