FC930385

Overview
NameFC930385
Unique NameFC930385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: XYL1_CANSH (NAD(P)H-dependent D-xylose reductase OS=Candida shehatae GN=XYL1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 61/164 (37.20%), Postives = 92/164 (56.10%), Query Frame = 2
Query:  209 FVLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAF-KGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNR---LKKAWKAMEGLVDSGLVRAIGVSNF 688
            F LN G ++P+IG G W+       + V  A+  GYR  D A  YGNE EVGE +  A  +G + RE++FLTS L+ + +    +E  +  +LK+L V Y+DL+L+H+P        +   PP     +   F+     + + WKA+E LV +G +R+IGVSNF
Sbjct:    9 FKLNNGLEMPSIGFGCWKLDKSTAADQVYNAIKAGYRLFDGAEDYGNEQEVGEGVKRAIDEGIVTREEIFLTSKLWNNYHDPKNVETALNKTLKDLKVDYVDLFLIHFPIAFKFVPIEEKYPPGFYCGDGDNFVYEDVPILETWKALEKLVKAGKIRSIGVSNF 172          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: PGFS2_BOVIN (Prostaglandin F synthase 2 OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 64/177 (36.16%), Postives = 101/177 (57.06%), Query Frame = 2
Query:  194 PGSSYFVLNTGAKIPAIGLGTW---QTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEAL-DEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKEL 712
            P S     N G  IP +G GT+   +      +EA K A+ VG+R++D AHLY NE +VG+A+  +   G++KRED+F TS L+C+      +   +  SL+NL + Y+DLY++H P       G+   P  +SG      ++ L   W+A+E   D+GL ++IGVSNF   Q++++
Sbjct:    3 PKSQRVKFNDGHFIPVLGFGTYAPEEVPKSEALEATKFAIEVGFRHVDSAHLYQNEEQVGQAIRSKIADGTVKREDIFYTSKLWCNSLQPELVRPALEKSLQNLQLDYVDLYIIHSPVSLKP--GNKFVPKDESGKLIFDSVD-LCHTWEALEKCKDAGLTKSIGVSNFNHKQLEKI 176          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: AK1C4_HUMAN (Aldo-keto reductase family 1 member C4 OS=Homo sapiens GN=AKR1C4 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 63/168 (37.50%), Postives = 96/168 (57.14%), Query Frame = 2
Query:  215 LNTGAKIPAIGLGTW---QTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEAL-DEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIK 706
            LN G  +P +G GT+   +      VE  K A+  G+R+ID A+LY NE +VG A+  +   GS+KRED+F TS L+C+      ++  +  SLK L + Y+DLYL+H+P   A   G+   P  ++G      ++ L   W+ ME   D+GL ++IGVSNF   Q++
Sbjct:   10 LNDGHFMPVLGFGTYAPPEVPRNRAVEVTKLAIEAGFRHIDSAYLYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWCTFFQPQMVQPALESSLKKLQLDYVDLYLLHFP--MALKPGETPLPKDENGKVIFDTVD-LSATWEVMEKCKDAGLAKSIGVSNFNCRQLE 174          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: GRE3_YEAST (NADPH-dependent aldose reductase GRE3 OS=Saccharomyces cerevisiae GN=GRE3 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 62/181 (34.25%), Postives = 100/181 (55.25%), Query Frame = 2
Query:  200 SSYFVLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAF-KGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWP---------ECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKEL 712
            SS   LN G K+P +GLG W+   ++C   +  A+ +GYR  D A  YGNE EVGE + +A  +G + R+D+F+ S L+ + +  + ++  ++ +L ++G+ YLDLY +H+P         E    GF    D   K           +   ++A+E  VD GL+++IGVSNF  S I++L
Sbjct:    2 SSLVTLNNGLKMPLVGLGCWKIDKKVCANQIYEAIKLGYRLFDGACDYGNEKEVGEGIRKAISEGLVSRKDIFVVSKLWNNFHHPDHVKLALKKTLSDMGLDYLDLYYIHFPIAFKYVPFEEKYPPGFYTGADDEKKGHITEAHV--PIIDTYRALEECVDEGLIKSIGVSNFQGSLIQDL 180          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: AK1CD_MOUSE (Aldo-keto reductase family 1 member C13 OS=Mus musculus GN=Akr1c13 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 63/170 (37.06%), Postives = 98/170 (57.65%), Query Frame = 2
Query:  215 LNTGAKIPAIGLGTW---QTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFK-GSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKEL 712
            LN G  IPA+G GT+   +      +EA   AL VGYR++D A+ Y  E E+G+A+    K G +KRED+F+T+ L+C+      ++  +  SLK L + Y+DLY+MH+P    SG  D   P ++ G      ++     W+ +E   D+GLV++IGVSNF   Q++ +
Sbjct:   10 LNDGHLIPALGFGTYKPKEVPKSKSLEAACLALDVGYRHVDTAYAYQVEEEIGQAIQSKIKAGVVKREDLFITTKLWCTCFRPELVKPALEKSLKKLQLDYVDLYIMHYPVPMKSGDNDF--PVNEQGKSLLDTVD-FCDTWERLEECKDAGLVKSIGVSNFNHRQLERI 176          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: AK1C1_MACFA (Aldo-keto reductase family 1 member C1 homolog OS=Macaca fascicularis GN=AKR1C1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 64/168 (38.10%), Postives = 97/168 (57.74%), Query Frame = 2
Query:  215 LNTGAKIPAIGLGTW---QTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEAL-DEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIK 706
            LN G  +P +G GT+   +      +EA K A+  G+R+ID AHLY NE  VG A+  +   G++KRED+F TS L+C+ +    +   +  SLKNL + Y+DLYL+H+P       G+   P  ++G      ++ L   W+AME   D+GL ++IGVSNF   Q++
Sbjct:   10 LNDGHFMPVLGFGTYAPAEVPKNKALEATKLAIEAGFRHIDSAHLYNNEEYVGLAIRSKIADGTVKREDIFYTSKLWCNSHRPEFVRPALERSLKNLQLDYVDLYLIHFPVSLKP--GEELIPKDENGKLLFDTVD-LCATWEAMEKCKDAGLAKSIGVSNFNRRQLE 174          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: YTBE_BACSU (Uncharacterized oxidoreductase ytbE OS=Bacillus subtilis GN=ytbE PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.857e-22
Identity = 64/169 (37.87%), Postives = 92/169 (54.44%), Query Frame = 2
Query:  215 LNTGAKIPAIGLGTWQT--GGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAF-KGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKEL 712
            L+ G ++P  GLG +Q   G EL V AVKTA+  GYR+ID A +YGNE  VGE + E   +  + RED+F+TS ++ +     +       SL  LG+ YLDLYL+HWP                          + K+AW+A+E L   G ++AIGVSNF +  +++L
Sbjct:   11 LHNGVEMPWFGLGVFQVEEGSEL-VNAVKTAIVHGYRSIDTAAIYGNEAGVGEGIREGIEEAGISREDLFITSKVWNADLGYEETLAAFETSLSKLGLDYLDLYLIHWP-----------------------VEGKYKEAWRALETLYKEGRIKAIGVSNFQIHHLEDL 155          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: XYL1_PICGU (NADPH-dependent D-xylose reductase OS=Pichia guilliermondii GN=XYL1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.857e-22
Identity = 57/170 (33.53%), Postives = 98/170 (57.65%), Query Frame = 2
Query:  215 LNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAF-KGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNR---LKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKEL 712
            LN+G ++P++G G W+     C + +  A+ VGYR  D A  YGNE EVGE ++ A  +G + R+++F+ S L+ S +    +E  +  +L +L V YLDL+L+H+P        +   PP     +  +F+     +   W+A+E +V+ G +R+IG+SNF  + I++L
Sbjct:    5 LNSGYEMPSVGFGCWKVDKATCADTIYNAIKVGYRLFDGAEDYGNEKEVGEGINRALDEGLVARDELFVVSKLWNSFHDPKNVEKALDRTLSDLKVDYLDLFLIHFPIAFKFVPFEEKYPPGFYCGDGDKFIYEGVPIIDTWRALEKMVEKGKIRSIGISNFPGALIQDL 174          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: YPR1_YEAST (Putative reductase 1 OS=Saccharomyces cerevisiae GN=YPR1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22
Identity = 67/180 (37.22%), Postives = 101/180 (56.11%), Query Frame = 2
Query:  200 SSYFVLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATD------PPSKSGS---ERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKEL 712
            S+   LNTGA IP +G GTW++       +V  AL  GYR+ID A +Y NE EVG A+ ++    + RE++F+T+ L+ +       E  +  SLK LG+ Y+DLYLMHWP    +     TD      P  + G+   + +++     K W+ M+ L  +G  +A+GVSNF ++ IKEL
Sbjct:    9 SATLKLNTGASIPVLGFGTWRSVDNNGYHSVIAALKAGYRHIDAAAIYLNEEEVGRAIKDS---GVPREEIFITTKLWGTEQ--RDPEAALNKSLKRLGLDYVDLYLMHWPVPLKT--DRVTDGNVLCIPTLEDGTVDIDTKEW--NFIKTWELMQELPKTGKTKAVGVSNFSINNIKEL 179          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: AK1C4_MACFA (Aldo-keto reductase family 1 member C4 OS=Macaca fascicularis GN=AKR1C4 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 64/168 (38.10%), Postives = 97/168 (57.74%), Query Frame = 2
Query:  215 LNTGAKIPAIGLGTW---QTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEAL-DEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIK 706
            LN G  +P +G GT+   +      VE  K A+  G+R+ID A+LY NE +VG A+  +   GS+KRED+F TS L+C+      ++  +  SLK L + Y+DLYL+H+P   A   G+   P  ++G      ++ L   W+AME   D+GL ++IGVSNF   Q++
Sbjct:   10 LNDGHFMPVLGFGTYAPPEVPRNRVVEVTKLAIEAGFRHIDSAYLYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWCTFFRPQLVQPALESSLKKLQLDYVDLYLIHFP--MALKPGETPLPKDENGKVMFDTVD-LCAIWEAMEKCKDAGLAKSIGVSNFNRRQLE 174          
The following BLAST results are available for this feature:
BLAST of FC930385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
XYL1_CANSH1.675e-2237.20NAD(P)H-dependent D-xylose reductase OS=Candida sh... [more]
PGFS2_BOVIN1.675e-2236.16Prostaglandin F synthase 2 OS=Bos taurus PE=2 SV=1[more]
AK1C4_HUMAN1.675e-2237.50Aldo-keto reductase family 1 member C4 OS=Homo sap... [more]
GRE3_YEAST2.187e-2234.25NADPH-dependent aldose reductase GRE3 OS=Saccharom... [more]
AK1CD_MOUSE2.187e-2237.06Aldo-keto reductase family 1 member C13 OS=Mus mus... [more]
AK1C1_MACFA2.187e-2238.10Aldo-keto reductase family 1 member C1 homolog OS=... [more]
YTBE_BACSU2.857e-2237.87Uncharacterized oxidoreductase ytbE OS=Bacillus su... [more]
XYL1_PICGU2.857e-2233.53NADPH-dependent D-xylose reductase OS=Pichia guill... [more]
YPR1_YEAST3.731e-2237.22Putative reductase 1 OS=Saccharomyces cerevisiae G... [more]
AK1C4_MACFA4.873e-2238.10Aldo-keto reductase family 1 member C4 OS=Macaca f... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34007A04EF PostHarvC1 Citrus clementina cDNA clone C34007A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930385 ID=FC930385; Name=FC930385; organism=Citrus clementina; type=EST; length=713bp
GCTGCTGGAGTTCATTGAGTCAAGTTGACAAACACTTGGCCTGCACTTTT
TAATACTGTCAAAAGCTTTGAAGTGAAAAAAAAAATGCAAACTCTCGTCN
TGGGTTTTGTGATTTTTGGTTTGATTTGGTATCTGTGTTTTTGATCTTTT
TTTCTTTTTGTTCATTTGGGAAATGAAAGGGAGATTTGCTAGTCCAGGGA
GTAGTTACTTTGTGTTGAACACAGGAGCTAAAATTCCAGCCATTGGATTG
GGAACATGGCAAACTGGGGGAGAGCTTTGTGTTGAGGCTGTGAAAACAGC
ATTGTCAGTGGGTTACCGTAATATAGATTGTGCTCATCTTTATGGGAATG
AGATTGAAGTTGGGGAAGCACTTGATGAAGCTTTCAAAGGATCTCTCAAG
AGAGAGGATGTGTTCCTGACCTCAACTCTCTATTGTAGTATGAATTCAAT
CAATAAGATTGAAAATTACGTCAGAGTGTCTCTTAAGAATCTTGGAGTTT
CATATTTGGATCTCTATTTAATGCATTGGCCTGAGTGCTCTGCTTCTGGT
TTTGGGGATGCTACTGATCCTCCTTCTAAGTCCGGGAGTGAGCGTAGGCA
GTTTTTAAATCGCTTGAAGAAAGCATGGAAAGCCATGGAAGGTCTCGTGG
ACTCGGGATTGGTCAGAGCTATTGGTGTCAGTAATTTTGGGGTTTCACAG
ATCAAAGAGTTGC
back to top