FC930387

Overview
NameFC930387
Unique NameFC930387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14940 contig Ccv1_Contig14940:130..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KI18B_RAT (Kinesin-like protein KIF18B OS=Rattus norvegicus GN=Kif18b PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.003e-25
Identity = 69/138 (50.00%), Postives = 88/138 (63.77%), Query Frame = 2
Query:    8 TGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG---HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 412
            T AN  SSRSHAI Q+ +K+            V K+S IDLAGSER + T    ++ R EGA IN+SLLAL   + AL + +G   H+P+R SKLT +L+DS  GN RTVMI+ +SPSS   E T NTL+YADR K +
Sbjct:  217 TDANATSSRSHAIFQIFVKQQDRVPGLTQALRVAKMSLIDLAGSERASSTHAKGERLR-EGANINRSLLALINVLNALADAKGRKSHVPYRDSKLTRLLKDSIGGNCRTVMIAAVSPSSLTYEDTYNTLKYADRAKEI 353          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KI18B_HUMAN (Kinesin-like protein KIF18B OS=Homo sapiens GN=KIF18B PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.003e-25
Identity = 70/138 (50.72%), Postives = 88/138 (63.77%), Query Frame = 2
Query:    8 TGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG---HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 412
            T AN  SSRSHAI Q+ +K+            V K+S IDLAGSER + T    ++ R EGA IN+SLLAL   + AL + +G   H+P+R SKLT +L+DS  GN RTVMI+ ISPSS   E T NTL+YADR K +
Sbjct:  215 TDANATSSRSHAIFQIFVKQQDRVPGLTQAVQVAKMSLIDLAGSERASSTHAKGERLR-EGANINRSLLALINVLNALADAKGRKTHVPYRDSKLTRLLKDSLGGNCRTVMIAAISPSSLTYEDTYNTLKYADRAKEI 351          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KI18B_CHICK (Kinesin-like protein KIF18B OS=Gallus gallus GN=KIF18B PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.977e-25
Identity = 71/160 (44.38%), Postives = 97/160 (60.62%), Query Frame = 2
Query:    8 TGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQG---HIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTINLKESTT 478
            T AN  SSRSHA+ Q+ +K+            V K+S IDLAGSER + T    ++ R EGA IN+SLLAL   I AL + +    HIP+R SKLT +L+DS  GN RT+MI+ +SPSS   E T NTL+YA+R K +    + K ++LS   ++ +  T
Sbjct:  216 TDANATSSRSHAVFQIYVKQQDRVVGLSQDLQVAKMSLIDLAGSERASVTNTKGERLR-EGANINRSLLALINVINALADAKSKKTHIPYRDSKLTRLLKDSIGGNCRTIMIAAVSPSSLAYEDTYNTLKYANRAKEIKL--SLKSNVLSLDCHISKYAT 372          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF12_MOUSE (Kinesin-like protein KIF12 OS=Mus musculus GN=Kif12 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.448e-24
Identity = 72/168 (42.86%), Postives = 96/168 (57.14%), Query Frame = 2
Query:   17 NEESSRSHAILQLAIKRSADGSESKPP------RLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL---DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL--------SKGNNPKKDILSSTINLKE 469
            N+ SSRSHA+L L I R    S+  PP       + GKL F+DLAGSE+ A  T +  Q  +E   IN+SLLAL  CI  L      Q HIPFR SKLT++L DS  G   T+M++C+SPS+ C   TL+TLRYA R + +        S G  P + + +  + L+E
Sbjct:  223 NQASSRSHALLTLHISRPT--SQQVPPVDLGEPPVGGKLCFVDLAGSEKVA-ATGSQGQLMLEANSINRSLLALGHCISLLLDPQRKQNHIPFRDSKLTKLLADSLGGRGVTLMVACVSPSAQCLPETLSTLRYASRAQRITTRPQGPKSPGVKPPQQVENELLRLQE 387          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KLP5_SCHPO (Kinesin-like protein 5 OS=Schizosaccharomyces pombe GN=klp5 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.891e-24
Identity = 71/154 (46.10%), Postives = 92/154 (59.74%), Query Frame = 2
Query:    8 TGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL--DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTINL 463
            T AN  SSRSHA+LQ+ + +    +       +  LS IDLAGSER   T     +   EGA INKSLLAL  CI AL   + + H+P+R SKLT +L+ S  GN RTVMI C+SPSS   E T NTL+YA+R K      N K ++L + I++
Sbjct:  255 TEANAASSRSHAVLQVTLIQKPRTAGINEDHTLATLSIIDLAGSERATATKLRGSRL-FEGANINKSLLALGNCINALCDPHRRAHVPYRDSKLTRLLKFSLGGNCRTVMIVCVSPSSVHYEETHNTLKYANRAK------NIKTEVLRNMISV 401          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF3B_MOUSE (Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3b PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.891e-24
Identity = 70/152 (46.05%), Postives = 93/152 (61.18%), Query Frame = 2
Query:    2 GTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLS---KGNNPKKDIL 445
            G T  NE SSRSHAI  + I+ S  G + +    VGKL+ +DLAGSER A T    ++ + E  +IN SL AL   I AL D    HIP+R SKLT +L+DS  GN++TVM++ + P+S   E TL TLRYA+R K++    + N   KD L
Sbjct:  204 GATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLK-EATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDAL 354          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF3B_HUMAN (Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.891e-24
Identity = 70/152 (46.05%), Postives = 93/152 (61.18%), Query Frame = 2
Query:    2 GTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLS---KGNNPKKDIL 445
            G T  NE SSRSHAI  + I+ S  G + +    VGKL+ +DLAGSER A T    ++ + E  +IN SL AL   I AL D    HIP+R SKLT +L+DS  GN++TVM++ + P+S   E TL TLRYA+R K++    + N   KD L
Sbjct:  204 GATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLK-EATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDAL 354          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF27_HUMAN (Kinesin-like protein KIF27 OS=Homo sapiens GN=KIF27 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.470e-24
Identity = 64/147 (43.54%), Postives = 92/147 (62.59%), Query Frame = 2
Query:    2 GTTGANEESSRSHAILQLAI-------KRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 412
            GTT  NE SSRSHAI  ++I       + + DGS   P  +V K  F+DLAGSER    T N  +   E  +IN  LLAL   I AL + +    HIP+R +K+T +L+DS  G+++TVMI+C+SPSS   + +LN+L+YA+R +++
Sbjct:  196 GTTQMNEHSSRSHAIFTISICQVHKNMEAAEDGSWYSPRHIVSKFHFVDLAGSER-VTKTGNTGERFKESIQINSGLLALGNVISALGDPRRKSSHIPYRDAKITRLLKDSLGGSAKTVMITCVSPSSSNFDESLNSLKYANRARNI 341          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KRP95_STRPU (Kinesin-II 95 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP95 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.502e-24
Identity = 78/221 (35.29%), Postives = 113/221 (51.13%), Query Frame = 2
Query:    2 GTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTINLKESTTAPLSSALPTTSP--------------------YEDDT-DAWPEQNERDDFDASEDSYEPEK 598
            G+T  NE SSRSHAI  + I+ S  G + +    VGKL+ +DLAGSER A T     + + E  +IN SL AL   I AL D    HIP+R SKLT +L+DS  GN++TVM++ + P+S   + T+ TLRYA+R K++       +D   + +   +   + L  AL    P                     ED+T +   E +E + +  S+   E EK
Sbjct:  203 GSTNMNEHSSRSHAIFIITIECSELGVDGENHIRVGKLNLVDLAGSERQAKTGATGDRLK-EATKINLSLSALGNVISALVDGKSSHIPYRDSKLTRLLQDSLGGNAKTVMVANMGPASYNFDETITTLRYANRAKNIKNKPKINEDPKDALLREFQEEISRLKQALDKKGPSDGRKKGKKRKPGEQGGDDDIEDETEEEGDEMDEEEMYKESQQKLEEEK 422          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF4_XENLA (Chromosome-associated kinesin KIF4 OS=Xenopus laevis GN=kif4 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.386e-24
Identity = 62/139 (44.60%), Postives = 87/139 (62.59%), Query Frame = 2
Query:    5 TTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQ---GHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 412
            +T  N +SSRSHAI  ++I++  +G ++   R   KL  +DLAGSER   T     + + EG  IN+ LL L   I AL ++    G +P+R SKLT +L+DS  GNS T+MI+C+SP+    E TLNTLRYADR + +
Sbjct:  202 STAMNSQSSRSHAIFTISIEQRKEGDKNNSFR--SKLHLVDLAGSERQKKTKAEGDRLK-EGISINRGLLCLGNVISALGDESKKGGFVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNMEETLNTLRYADRARKI 337          
The following BLAST results are available for this feature:
BLAST of FC930387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
KI18B_RAT1.003e-2550.00Kinesin-like protein KIF18B OS=Rattus norvegicus G... [more]
KI18B_HUMAN1.003e-2550.72Kinesin-like protein KIF18B OS=Homo sapiens GN=KIF... [more]
KI18B_CHICK4.977e-2544.38Kinesin-like protein KIF18B OS=Gallus gallus GN=KI... [more]
KIF12_MOUSE1.448e-2442.86Kinesin-like protein KIF12 OS=Mus musculus GN=Kif1... [more]
KLP5_SCHPO1.891e-2446.10Kinesin-like protein 5 OS=Schizosaccharomyces pomb... [more]
KIF3B_MOUSE1.891e-2446.05Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3... [more]
KIF3B_HUMAN1.891e-2446.05Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3... [more]
KIF27_HUMAN2.470e-2443.54Kinesin-like protein KIF27 OS=Homo sapiens GN=KIF2... [more]
KRP95_STRPU5.502e-2435.29Kinesin-II 95 kDa subunit OS=Strongylocentrotus pu... [more]
KIF4_XENLA9.386e-2444.60Chromosome-associated kinesin KIF4 OS=Xenopus laev... [more]

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Properties
Property NameValue
Genbank descriptionC34007A06EF PostHarvC1 Citrus clementina cDNA clone C34007A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930387 ID=FC930387; Name=FC930387; organism=Citrus clementina; type=EST; length=734bp
GGGTACAACTGGTGCTAATGAGGAATCCTCCCGTTCACATGCCATACTTC
AGCTTGCTATCAAGAGGTCAGCTGATGGTAGTGAATCAAAGCCTCCTCGA
CTTGTTGGCAAGCTCTCTTTTATAGATCTTGCTGGAAGTGAACGTGGTGC
TGATACTACAGACAACGATAAACAGACAAGAATGGAAGGAGCAGAGATAA
ATAAGAGCTTGCTTGCACTAAAGGAATGCATAAGAGCTCTTGACAATGAT
CAGGGTCACATTCCTTTCAGAGGCAGTAAATTAACTGAGGTTCTGAGGGA
TTCATTTGTTGGCAATTCACGCACGGTTATGATATCATGCATTTCACCAA
GCTCAGGGTGTTGTGAACACACTCTCAACACATTAAGATATGCCGACAGA
GTGAAGAGTCTTTCAAAAGGGAACAATCCTAAAAAGGACATACTGTCTTC
AACCATAAATTTGAAGGAGTCAACTACTGCACCCTTATCTTCAGCTCTAC
CAACAACATCCCCTTATGAGGATGACACTGATGCATGGCCTGAACAAAAT
GAAAGAGATGATTTTGACGCATCAGAGGATTCCTATGAACCAGAGAAGCC
GGTATGGATGAAAAGTGGGAAGCTAGAGCAATTCAATCTCCCTTCTGCAC
AGGATCAATTACGAAAACCACCCAATGGTCAGACAAGGTGGAAGGAGCAG
CCAAAATCTGGGTTTTAAGAATTTCAATTCAGAT
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