FC930387

Overview
NameFC930387
Unique NameFC930387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14940 contig Ccv1_Contig14940:130..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF1B_HUMAN (Kinesin-like protein KIF1B OS=Homo sapiens GN=KIF1B PE=1 SV=5)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 63/148 (42.57%), Postives = 83/148 (56.08%), Query Frame = 2
Query:    8 TGANEESSRSHAILQLAI-KRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL---DN---------DQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 412
            T  NE SSRSHA+  +   ++  D   +     V K+S +DLAGSER AD+T        EGA INKSL  L + I AL   DN             IP+R S LT +LR++  GNSRT M++ +SP+    + TL+TLRYADR K +
Sbjct:  208 TNMNETSSRSHAVFTIVFTQKKHDNETNLSTEKVSKISLVDLAGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEVDNCTSKSKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF1A_DROPS (Kinesin-like protein unc-104 OS=Drosophila pseudoobscura pseudoobscura GN=unc-104 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 63/145 (43.45%), Postives = 81/145 (55.86%), Query Frame = 2
Query:    8 TGANEESSRSHAILQLAI-KRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL---------DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 412
            T  NE SSRSHA+  +   +R  D         V K+S +DLAGSER AD+T        EGA INKSL  L + I AL         +     IP+R S LT +LR++  GNS+T MI+ ISP+    + TL+TLRYADR K +
Sbjct:  208 TNMNETSSRSHAVFTIFFTQRRHDTMTDLTTEKVSKISLVDLAGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEVASKKKHNKKADFIPYRDSALTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQI 351          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF1A_ANOGA (Kinesin-like protein unc-104 OS=Anopheles gambiae GN=unc-104 PE=3 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 63/145 (43.45%), Postives = 81/145 (55.86%), Query Frame = 2
Query:    8 TGANEESSRSHAILQLAI-KRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL---------DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 412
            T  NE SSRSHA+  +   ++  D   S     V K+S +DLAGSER AD+T        EGA INKSL  L + I AL               IP+R S LT +LR++  GNS+T MI+ ISP+    + TL+TLRYADR K +
Sbjct:  208 TNMNETSSRSHAVFTIFFTQKRQDRMTSLETEKVSKISLVDLAGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEIASKNKKSKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQI 351          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF1B_RAT (Kinesin-like protein KIF1B OS=Rattus norvegicus GN=Kif1b PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.081e-19
Identity = 63/148 (42.57%), Postives = 83/148 (56.08%), Query Frame = 2
Query:    8 TGANEESSRSHAILQLAI-KRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL---DN---------DQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 412
            T  NE SSRSHA+  +   ++  D   +     V K+S +DLAGSER AD+T        EGA INKSL  L + I AL   DN             IP+R S LT +LR++  GNSRT M++ +SP+    + TL+TLRYADR K +
Sbjct:  208 TNMNETSSRSHAVFTIVFTQKKQDPETNLSTEKVSKISLVDLAGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEVDNCTSKSKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF1B_MOUSE (Kinesin-like protein KIF1B OS=Mus musculus GN=Kif1b PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.081e-19
Identity = 63/148 (42.57%), Postives = 83/148 (56.08%), Query Frame = 2
Query:    8 TGANEESSRSHAILQLAI-KRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL---DN---------DQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 412
            T  NE SSRSHA+  +   ++  D   +     V K+S +DLAGSER AD+T        EGA INKSL  L + I AL   DN             IP+R S LT +LR++  GNSRT M++ +SP+    + TL+TLRYADR K +
Sbjct:  208 TNMNETSSRSHAVFTIVFTQKKQDPETNLSTEKVSKISLVDLAGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEVDNCTSKSKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF11_HUMAN (Kinesin-like protein KIF11 OS=Homo sapiens GN=KIF11 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.081e-19
Identity = 56/132 (42.42%), Postives = 78/132 (59.09%), Query Frame = 2
Query:   17 NEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 412
            N  SSRSH++  + I       + +    +GKL+ +DLAGSE    +   DK+ R E   IN+SLL L   I AL     H+P+R SKLT +L+DS  G +RT +I+ ISP+S   E TL+TL YA R K++
Sbjct:  229 NAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: CIN8_CANGA (Kinesin-like protein CIN8 OS=Candida glabrata GN=CIN8 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.081e-19
Identity = 65/178 (36.52%), Postives = 100/178 (56.18%), Query Frame = 2
Query:    5 TTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPK------KDILSSTINLKESTTAPLSSALPTTSPYE 520
            +T  N+ SSRSH+I  + + +  +G   +    V K++ +DLAGSE  + +   +++ + E   IN+SLL L   I +L +   HIPFR SKLT +L+DS  GN++T +I+ ISP+    E T +TL YA + K++   N P+      KDIL  +I    S  A + S L +T   E
Sbjct:  340 STKMNDFSSRSHSIFTITLYKEQNGELFR----VSKMNLVDLAGSENISRSGAMNQRAK-EAGSINQSLLTLGRVINSLADKSEHIPFRESKLTRLLQDSLGGNTKTALIATISPAKMTSEETCSTLEYASKAKNIK--NKPQLGAFIMKDILVRSIT---SELAKIKSDLLSTKSKE 507          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KINH_NEUCR (Kinesin heavy chain OS=Neurospora crassa GN=kin PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 66/156 (42.31%), Postives = 89/156 (57.05%), Query Frame = 2
Query:    8 TGANEESSRSHAILQLAI-KRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRAL-DNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTINLKE 469
            T  N+ESSRSH+I  + I +++ +   +K     G+L  +DLAGSE+    T    QT  E  +INKSL AL   I AL D    H+P+R SKLT +L++S  GNSRT +I   SPSS     TL+TLR+  R KS+   N  K +   S   LK+
Sbjct:  199 TNMNQESSRSHSIFVITITQKNVETGSAKS----GQLFLVDLAGSEK-VGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK--NKAKVNAELSPAELKQ 347          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KI16B_HUMAN (Kinesin-like protein KIF16B OS=Homo sapiens GN=KIF16B PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 63/147 (42.86%), Postives = 83/147 (56.46%), Query Frame = 2
Query:    8 TGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDN------------DQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL 412
            TG N+ SSRSHAI  +   ++   SE  P   V K+  +DLAGSER AD T        EG  INKSL+ L   I AL +             Q  +P+R S LT +L+DS  GNS+T+MI+ ISP+      TL+TLRYA+R K++
Sbjct:  214 TGMNDVSSRSHAIFTIKFTQAKFDSEM-PCETVSKIHLVDLAGSER-ADATGATGVRLKEGGNINKSLVTLGNVISALADLSQDAANTLAKKKQVFVPYRDSVLTWLLKDSLGGNSKTIMIATISPADVNYGETLSTLRYANRAKNI 358          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: ARK3_ARATH (Armadillo repeat-containing kinesin-like protein 3 OS=Arabidopsis thaliana GN=ARK3 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 80/249 (32.13%), Postives = 113/249 (45.38%), Query Frame = 2
Query:    8 TGANEESSRSHAILQLAIKRSA---DGSES------------KPPRL-VGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTINLKESTTAPLSSALPTTSPYEDDTDAWPEQNERDDFDASEDSYEPEKPVWMKSGKLEQFNLPSAQDQLRKPPNGQTRWKEQPK 706
            T  N ESSRSHAIL + ++RS    DG  S            KPP +  GKL  +DLAGSER  + + ++  T  E   IN SL AL +CI AL  +  H+PFR SKLT +LRDSF G +RT ++  I PS      T +T+ +  R   +      K++      +L       L + +      E    A+ ++ ER   +A     E EK     +  LE   L    D +      +  W +  K
Sbjct:  263 TKLNTESSRSHAILMVNVRRSMKTRDGLSSESNGNSHMTKSLKPPVVRKGKLVVVDLAGSER-INKSGSEGHTLEEAKSINLSLSALGKCINALAENSSHVPFRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETTSTIMFGQRAMKVENMVKIKEEF--DYKSLSRRLEVQLDNLIEEN---ERQQKAFVDEIERITVEAHNQISEAEK---RYANALEDEKLRYQNDYMESIKKLEENWSKNQK 502          
The following BLAST results are available for this feature:
BLAST of FC930387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
KIF1B_HUMAN3.124e-1942.57Kinesin-like protein KIF1B OS=Homo sapiens GN=KIF1... [more]
KIF1A_DROPS3.124e-1943.45Kinesin-like protein unc-104 OS=Drosophila pseudoo... [more]
KIF1A_ANOGA3.124e-1943.45Kinesin-like protein unc-104 OS=Anopheles gambiae ... [more]
KIF1B_RAT4.081e-1942.57Kinesin-like protein KIF1B OS=Rattus norvegicus GN... [more]
KIF1B_MOUSE4.081e-1942.57Kinesin-like protein KIF1B OS=Mus musculus GN=Kif1... [more]
KIF11_HUMAN4.081e-1942.42Kinesin-like protein KIF11 OS=Homo sapiens GN=KIF1... [more]
CIN8_CANGA4.081e-1936.52Kinesin-like protein CIN8 OS=Candida glabrata GN=C... [more]
KINH_NEUCR5.330e-1942.31Kinesin heavy chain OS=Neurospora crassa GN=kin PE... [more]
KI16B_HUMAN5.330e-1942.86Kinesin-like protein KIF16B OS=Homo sapiens GN=KIF... [more]
ARK3_ARATH5.330e-1932.13Armadillo repeat-containing kinesin-like protein 3... [more]

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Properties
Property NameValue
Genbank descriptionC34007A06EF PostHarvC1 Citrus clementina cDNA clone C34007A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930387 ID=FC930387; Name=FC930387; organism=Citrus clementina; type=EST; length=734bp
GGGTACAACTGGTGCTAATGAGGAATCCTCCCGTTCACATGCCATACTTC
AGCTTGCTATCAAGAGGTCAGCTGATGGTAGTGAATCAAAGCCTCCTCGA
CTTGTTGGCAAGCTCTCTTTTATAGATCTTGCTGGAAGTGAACGTGGTGC
TGATACTACAGACAACGATAAACAGACAAGAATGGAAGGAGCAGAGATAA
ATAAGAGCTTGCTTGCACTAAAGGAATGCATAAGAGCTCTTGACAATGAT
CAGGGTCACATTCCTTTCAGAGGCAGTAAATTAACTGAGGTTCTGAGGGA
TTCATTTGTTGGCAATTCACGCACGGTTATGATATCATGCATTTCACCAA
GCTCAGGGTGTTGTGAACACACTCTCAACACATTAAGATATGCCGACAGA
GTGAAGAGTCTTTCAAAAGGGAACAATCCTAAAAAGGACATACTGTCTTC
AACCATAAATTTGAAGGAGTCAACTACTGCACCCTTATCTTCAGCTCTAC
CAACAACATCCCCTTATGAGGATGACACTGATGCATGGCCTGAACAAAAT
GAAAGAGATGATTTTGACGCATCAGAGGATTCCTATGAACCAGAGAAGCC
GGTATGGATGAAAAGTGGGAAGCTAGAGCAATTCAATCTCCCTTCTGCAC
AGGATCAATTACGAAAACCACCCAATGGTCAGACAAGGTGGAAGGAGCAG
CCAAAATCTGGGTTTTAAGAATTTCAATTCAGAT
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