FC930389

Overview
NameFC930389
Unique NameFC930389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5076 contig Ccv1_Contig5076:182..911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R5_MOUSE (NADH-cytochrome b5 reductase-like OS=Mus musculus GN=Cyb5rl PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 55/163 (33.74%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  254 LYSSKKPKVS------LDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLI 724
            L S K+P  S      L PE F  F +    +++ +     F LP   S LGL  GQH+  RG    G E+ + YTP +  +  G+F+++IK Y  G MS +    R GD    +GP G F Y+P +     M A G+G+ PM P+ ++I ++ + +T V L+
Sbjct:   57 LLSGKQPPESQSCSAKLSPETFLAFHISTMEKVTKDTYLVRFTLPG-NSRLGLRPGQHLILRGV-VDGLEIQRAYTPISPVTAEGYFDVLIKCYRTGLMSQYVESWRTGDTAFWRGPFGSFLYEPKKYGELLMLAAGTGLAPMVPILQSITDDEDDETFVTLV 217          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA_LEPMC (Nitrate reductase [NADPH] OS=Leptosphaeria maculans GN=NIAD PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 2
Query:  260 SSKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEE-VIKPYTPTTLDSDVGHFELVIKMYPQ------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQT 709
            SS +P   LD   + +  L  + ++S +   F F+L   +  LGLP GQH+  R +D    E +I+ YTP +  S+ G  +++IK+Y        G+M+     +  G ++ +KGP G+F Y             +VR+  M  GGSGITP++ V RAIL++    T
Sbjct:  631 SSLRPTF-LDSRTWSKALLSSKTKVSWDTRIFRFKLDHASQTLGLPTGQHLMIRLRDPVTREAIIRSYTPISQISEQGFCDVLIKIYADAPGREGGKMTKALDSIPCGHWVDMKGPIGKFEYLGKGVCSINGNERRVRSMKMICGGSGITPIYQVLRAILQDSADST 796          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA_BEABA (Nitrate reductase [NADPH] OS=Beauveria bassiana GN=NIA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 50/162 (30.86%), Postives = 80/162 (49.38%), Query Frame = 2
Query:  278 VSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKD-SQGEEVIKPYTPTTLDSDVGHFELVIKMY------PQGRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTK 712
            V L P+ + +  L  +  +S +   F+F L      +GLP GQH+  R +D +  E VI+ YTP +     G  +++IK+Y      P G+M+     + +G ++ +KGP G+F Y              VR F M   GSG+TP+F V RA+  +    T+
Sbjct:  633 VFLQPKYWSKAILETKTDVSSDSKIFSFRLDHAAQSIGLPTGQHLLVRLRDPATREAVIRAYTPLSETHAKGQLDILIKIYRDVPGQPGGKMTQALDSIPLGHFVDIKGPVGKFEYLGKGHCTVSGTSRHVRRFVMICAGSGVTPIFQVLRAVTSDAQDGTE 794          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R4_RAT (Cytochrome b5 reductase 4 OS=Rattus norvegicus GN=Cyb5r4 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 45/155 (29.03%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  299 FKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFE-----------LVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQ-VRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIY 727
            +++ +L+ +  ++H+   F   LP P++ L +P+GQH+  +     G E++KPYTP + +S +  F+            +IK+YP G  +     +++GD+++V GP+G F+    Q V    + A G+G TPM  V    L + +   KV L++
Sbjct:  274 YRQCQLISKEDVTHDTRLFCLMLP-PSTHLQVPVGQHVYLK-LSVTGAEIVKPYTPVS-ESLLSDFKEPVLSPNKYIYFLIKIYPAGLFTPELDRLQIGDFVSVSGPEGNFKVSKLQEVEDLFLLAAGTGFTPMVTVLNHALTHMSSLRKVKLMF 425          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R4_XENTR (Cytochrome b5 reductase 4 OS=Xenopus tropicalis GN=cyb5r4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 46/154 (29.87%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  299 FKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTL----DSDVGHF------ELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRF-RYQPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIY 727
            +++ +L  +  +++N   F  +LP     L +P+G HI  +   S G +++KPYTP       D+    F       L+IK+YP G ++ H   + VGDY+++  P+G F  +Q   V    + A G+GITPM  + + +L   +   K  LI+
Sbjct:  277 YRKCRLASKTDINYNTKLFCVQLPQGCH-LQVPVGHHIYLKMNIS-GVDIVKPYTPVASCLLPDAQYSTFCNKQCLYLMIKIYPNGSITPHLENLTVGDYISISNPQGTFSSFQIENVMDVFLVAAGTGITPMIRLLQHVLTCVSSLRKAKLIF 428          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R4_MOUSE (Cytochrome b5 reductase 4 OS=Mus musculus GN=Cyb5r4 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 45/155 (29.03%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  299 FKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFE-----------LVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQ-VRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIY 727
            ++  +L+ +  ++H+       LP P++ L +P+GQH+  +     G E++KPYTP + DS +  F+            +IK+YP G  +     +++GD+++V GP+G F+    Q V    + A G+G TPM  V    L + +   KV L++
Sbjct:  290 YRRCQLISKEDVTHDTRLLCLMLP-PSTHLQVPVGQHVYLK-LSVTGAEIVKPYTPVS-DSLLSDFKEPVLSPNKYIYFLIKIYPAGLFTPELDRLQIGDFISVSGPEGNFKVSKLQEVEDLFLLAAGTGFTPMVTVLNYALSHMSSLRKVKLMF 441          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R4_BOVIN (Cytochrome b5 reductase 4 OS=Bos taurus GN=CYB5R4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 48/155 (30.97%), Postives = 80/155 (51.61%), Query Frame = 2
Query:  299 FKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFE-----------LVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRY-QPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIY 727
            +++ +LV +  ++H+   F   LP P++ L +P+GQH+  R     G E++KPYTP   DS    F+            +IK+YP G  +    ++++GDY++V  P+G F   Q  ++    + A G+G TPM  V    L N     KV L++
Sbjct:  274 YRKCQLVSKEDVTHDTKLFCLMLP-PSTHLEVPVGQHVYLR-LPITGTEIVKPYTPVC-DSLFSEFKEPVLPNNIYIYFLIKIYPAGFFTPELDQLQIGDYVSVSNPEGNFIISQLQELEDLFLLAAGTGFTPMVKVLNYALTNIPSLRKVKLMF 425          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R4_DANRE (Cytochrome b5 reductase 4 OS=Danio rerio GN=cyb5r4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 46/153 (30.07%), Postives = 80/153 (52.29%), Query Frame = 2
Query:  299 FKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYT--------PTTLDSDVGH-FELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQP-GQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIY 727
            ++E  L+ +  ++HN      +LP   S + +P+G+H+  +    QG +V+KPYT        P+   ++VG    L+IK+YP G ++ H   + +G  L+V GP+G F  +    V    M A G+G TPM  + R  L++     K+ L++
Sbjct:  283 YRECVLLSKTDVTHNTQLLRLQLPRG-SRMQVPVGRHVYLK-TSVQGTDVVKPYTAVDQMLIPPSQSSAEVGSDIHLMIKVYPDGVLTPHIANLPIGASLSVGGPEGSFTLRVLRDVTHLYMLAAGTGFTPMARLIRLALQDFTVIRKMKLMF 433          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R4_HUMAN (Cytochrome b5 reductase 4 OS=Homo sapiens GN=CYB5R4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 43/155 (27.74%), Postives = 80/155 (51.61%), Query Frame = 2
Query:  299 FKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFE-----------LVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQ-VRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIY 727
            +++ +L+ +  ++H+   F   LP P++ L +PIGQH+  +     G E++KPYTP +  S +  F+            +IK+YP G  +     +++GD+++V  P+G F+    Q +    + A G+G TPM  +    L +     KV L++
Sbjct:  275 YRKCQLISKEDVTHDTRLFCLMLP-PSTHLQVPIGQHVYLK-LPITGTEIVKPYTPVS-GSLLSEFKEPVLPNNKYIYFLIKIYPTGLFTPELDRLQIGDFVSVSSPEGNFKISKFQELEDLFLLAAGTGFTPMVKILNYALTDIPSLRKVKLMF 426          
The following BLAST results are available for this feature:
BLAST of FC930389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
NB5R5_MOUSE7.148e-1633.74NADH-cytochrome b5 reductase-like OS=Mus musculus ... [more]
NIA_LEPMC1.032e-1432.34Nitrate reductase [NADPH] OS=Leptosphaeria maculan... [more]
NIA_BEABA3.922e-1430.86Nitrate reductase [NADPH] OS=Beauveria bassiana GN... [more]
NB5R4_RAT5.663e-1329.03Cytochrome b5 reductase 4 OS=Rattus norvegicus GN=... [more]
NB5R4_XENTR9.660e-1329.87Cytochrome b5 reductase 4 OS=Xenopus tropicalis GN... [more]
NB5R4_MOUSE9.660e-1329.03Cytochrome b5 reductase 4 OS=Mus musculus GN=Cyb5r... [more]
NB5R4_BOVIN1.262e-1230.97Cytochrome b5 reductase 4 OS=Bos taurus GN=CYB5R4 ... [more]
NB5R4_DANRE1.068e-1130.07Cytochrome b5 reductase 4 OS=Danio rerio GN=cyb5r4... [more]
NB5R4_HUMAN4.059e-1127.74Cytochrome b5 reductase 4 OS=Homo sapiens GN=CYB5R... [more]

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Properties
Property NameValue
Genbank descriptionC34007A08EF PostHarvC1 Citrus clementina cDNA clone C34007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930389 ID=FC930389; Name=FC930389; organism=Citrus clementina; type=EST; length=730bp
AGAAGATAAGAAATGGAATAAACCGCACACTATTTTCTCTCCCACCCATT
TACTGGTTCCATTTCTTGTTTTGATTTTTGAGTTAAAAATTTATTCTTTA
TATACATATATTGATAAATCCGAGGCTTTTAGTTCTTCTATTGGTGAGCT
TTTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAGATGTTCAGC
TTCTCGTTGGTGGAGCTGTGGCTGTTTTGGCCATTGCTGTTGGTGCTGCT
TACTTGTATTCCTCTAAGAAGCCCAAAGTTTCCTTAGATCCTGAGAATTT
CAAGGAGTTTAAGCTTGTCAAGCGATTACAGCTGAGCCATAATGTGGCAA
AGTTCACATTTGAACTCCCAACGCCTACATCGGTTTTGGGTCTTCCAATT
GGACAACATATAAGTTGCAGGGGCAAGGATAGTCAGGGTGAAGAGGTTAT
TAAACCATATACCCCAACCACATTGGATTCTGATGTTGGTCATTTTGAAT
TGGTTATTAAGATGTACCCCCAAGGAAGGATGTCACACCATTTCCGTGAG
ATGCGTGTTGGTGATTATCTTGCCGTGAAGGGACCCAAGGGTCGATTCAG
GTATCAACCTGGCCAGGTCAGAGCATTTGGGATGACTGCAGGAGGTTCTG
GCATCACTCCAATGTTTCCAGTTACTAGAGCCATATTAGAGAACCCAAAT
NGACAGACAAAGGTGCACCTCATTTATGCC
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