FC930389

Overview
NameFC930389
Unique NameFC930389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5076 contig Ccv1_Contig5076:182..911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NCB5R_YEAS7 (NADH-cytochrome b5 reductase 1 OS=Saccharomyces cerevisiae (strain YJM789) GN=CBR1 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 65/156 (41.67%), Postives = 100/156 (64.10%), Query Frame = 2
Query:  269 KPKVSLDPE--NFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDV-GHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIY 727
            K K  LDP+  +F+ F LV++  L+HN + + F LP    VLGLPIGQHI  +  +  G+++ + YTPT+LD D  G+FEL++K YP G +S    E+++GD + +KGP+G + Y+       GM AGG+GI PM+ + +AI  + +  TKV L++
Sbjct:   28 KTKPVLDPKRNDFQSFPLVEKTILTHNTSMYKFGLPHADDVLGLPIGQHIVIKA-NINGKDITRSYTPTSLDGDTKGNFELLVKSYPTGNVSKMIGELKIGDSIQIKGPRGNYHYERNCRSHLGMIAGGTGIAPMYQIMKAIAMDSHDTTKVSLVF 182          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R3_MACFA (NADH-cytochrome b5 reductase 3 OS=Macaca fascicularis GN=CYB5R3 PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 9.000e-27
Identity = 68/185 (36.76%), Postives = 105/185 (56.76%), Query Frame = 2
Query:  254 LYSSKKPKVSLDPENFK-EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            L+    P ++L+  + K   +L+ R  +SH+  +F F LP+P  +LGLP+GQHI    +   G  VI+PYTP + D D G  +LVIK+Y +         G+MS +   M++GD +  +GP        KG+F  +P +        V++ GM AGG+GITPM  V RAI+++P+  T  HL++A
Sbjct:   26 LFRCSTPAITLESPDIKYSLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSAR-IDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSNPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFA 209          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R3_HUMAN (NADH-cytochrome b5 reductase 3 OS=Homo sapiens GN=CYB5R3 PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.535e-26
Identity = 67/185 (36.22%), Postives = 105/185 (56.76%), Query Frame = 2
Query:  254 LYSSKKPKVSLDPENFK-EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            L+    P ++L+  + K   +L+ R  +SH+  +F F LP+P  +LGLP+GQHI    +   G  V++PYTP + D D G  +LVIK+Y +         G+MS +   M++GD +  +GP        KG+F  +P +        V++ GM AGG+GITPM  V RAI+++P+  T  HL++A
Sbjct:   26 LFQRSTPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSAR-IDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFA 209          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R3_BOVIN (NADH-cytochrome b5 reductase 3 OS=Bos taurus GN=CYB5R3 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.535e-26
Identity = 67/185 (36.22%), Postives = 105/185 (56.76%), Query Frame = 2
Query:  254 LYSSKKPKVSLDPENFK-EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            L+    P ++L+  + K   +L+ +  +SH+  +F F LP+P  +LGLP+GQHI    +   G  VI+PYTP + D D G  +LVIK+Y +         G+MS +   M++GD +  +GP        KG+F  +P +        V++ GM AGG+GITPM  V RAI+++P+  T  HL++A
Sbjct:   25 LFQRSTPAITLENPDIKYPLRLIDKEVISHDTRRFRFALPSPEHILGLPVGQHIYLSAR-IDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSDPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFA 208          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R1_BOVIN (NADH-cytochrome b5 reductase 1 OS=Bos taurus GN=CYB5R1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.535e-26
Identity = 68/182 (37.36%), Postives = 103/182 (56.59%), Query Frame = 2
Query:  263 SKKPKVSL-DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            S++P V+L DP    + +L+ +  ++HN  +F F LPT   VLGLP+G+H+    +   G  VI+PYTP T D D G+ +LVIK+Y +         G+MS +   +++GD +  +GP        KG+F  QP +         R  GM AGG+GITPM  + RAIL++P   T+  L++A
Sbjct:   33 SRRPPVTLLDPNEKYQLRLLDKTTVNHNTKRFRFALPTAHHVLGLPVGKHVYLSAR-IDGSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDVVEFRGPSGLLTYAGKGKFNIQPNKKAPPEARVARNLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFA 213          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: MCR1_YARLI (NADH-cytochrome b5 reductase 2 OS=Yarrowia lipolytica GN=MCR1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.535e-26
Identity = 57/145 (39.31%), Postives = 85/145 (58.62%), Query Frame = 2
Query:  293 ENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIY 727
            + + + KL     LSHN     FELPTP S LGL     +  +    +G  V++PYTP +     G FELV+K YP+G+MS H  E++ GD L+ KGP  ++++QP   +   +   G+GITP++ +  AI +NP  +TKV+L Y
Sbjct:   41 DQWVDLKLKSSKDLSHNTKALIFELPTPDSTLGLTTASALLTKYVTPKGSNVVRPYTPVSDPDSKGEFELVVKSYPEGKMSKHIHELKEGDTLSFKGPIIKYQWQPNLHKEITLIGAGTGITPLYQLISAINKNPEDKTKVNLFY 185          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: MCR1_USTMA (NADH-cytochrome b5 reductase 2 OS=Ustilago maydis GN=MCR1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.005e-26
Identity = 61/155 (39.35%), Postives = 91/155 (58.71%), Query Frame = 2
Query:  281 SLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRG-----KDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            +L+ + F EF L +    +H+ A   FELP      G+ +   +  +      KD QG++VI+PYTP T    VGH + ++K YP G+M+ +   M+ GD L +KGP  +F Y+  +  + GM AGGSGITPM+ V + I  NP+ +TKV LIY+
Sbjct:   92 ALNKDQFVEFTLKEIKPYNHDSATLIFELPEGKKP-GMGVASAVVVKAVGDGLKDDQGKDVIRPYTPITSPDTVGHMDFLVKKYPGGKMTTYMHSMKPGDKLGIKGPIAKFAYKANEFESIGMIAGGSGITPMYQVIQDIASNPSDKTKVTLIYS 245          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R1_RAT (NADH-cytochrome b5 reductase 1 OS=Rattus norvegicus GN=Cyb5r1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.619e-26
Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = 2
Query:  263 SKKPKVSL-DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            S++P+V+L DP+     +L+ +  +SHN  +F F LPT   +LGLP+G+H+    +   G +VI+PYTP T D D G+ +LVIK+Y +         G+MS +   +++GD +  +GP        KG F  QP +         +  GM AGG+GITPM  + RAIL+ P   T+  L++A
Sbjct:   33 SRRPQVTLQDPDEKYLLRLLDKTTVSHNTRRFRFALPTAHHILGLPVGKHVYLSAR-IDGSQVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFSEGGKMSQYLDSLKIGDVVEFRGPSGLLSYAGKGNFNIQPNKKSPPELRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFLLFA 213          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R3_CANFA (NADH-cytochrome b5 reductase 3 OS=Canis familiaris GN=CYB5R3 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 66/185 (35.68%), Postives = 105/185 (56.76%), Query Frame = 2
Query:  254 LYSSKKPKVSLDPENFK-EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            L+    P ++L+  + K   +L+ +  ++H+  +F F LP+P  +LGLP+GQHI    +   G  VI+PYTP + D D G  +LVIK+Y +         G+MS +   M++GD +  +GP        KG+F  +P +        V++ GM AGG+GITPM  V RAI+++P+  T  HL++A
Sbjct:   26 LFQRSTPAITLESPDIKYPLRLIDKEVINHDTRRFRFALPSPQHILGLPVGQHIYLSAR-IDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSNPIIKTVKSVGMIAGGTGITPMLQVIRAIIKDPHDPTVCHLLFA 209          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R1_MOUSE (NADH-cytochrome b5 reductase 1 OS=Mus musculus GN=Cyb5r1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 67/182 (36.81%), Postives = 102/182 (56.04%), Query Frame = 2
Query:  263 SKKPKVSL-DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            S++P+V+L DP+     +L+ +  +SHN  +F F LPT   +LGLP+G+H+    +   G  VI+PYTP T D D G+ +LVIK+Y +         G+MS +   +++GD +  +GP        KG F  QP +         +  GM AGG+GITPM  + RAIL+ P   T+  L++A
Sbjct:   33 SRRPQVTLQDPDEKYLLRLLDKTTVSHNTRRFRFALPTAHHILGLPVGKHVYLSAR-IDGSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDMVEFRGPSGLLSYAGKGNFNIQPNKKSPPELRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFLLFA 213          
The following BLAST results are available for this feature:
BLAST of FC930389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
NCB5R_YEAS71.483e-2941.67NADH-cytochrome b5 reductase 1 OS=Saccharomyces ce... [more]
NB5R3_MACFA9.000e-2736.76NADH-cytochrome b5 reductase 3 OS=Macaca fascicula... [more]
NB5R3_HUMAN1.535e-2636.22NADH-cytochrome b5 reductase 3 OS=Homo sapiens GN=... [more]
NB5R3_BOVIN1.535e-2636.22NADH-cytochrome b5 reductase 3 OS=Bos taurus GN=CY... [more]
NB5R1_BOVIN1.535e-2637.36NADH-cytochrome b5 reductase 1 OS=Bos taurus GN=CY... [more]
MCR1_YARLI1.535e-2639.31NADH-cytochrome b5 reductase 2 OS=Yarrowia lipolyt... [more]
MCR1_USTMA2.005e-2639.35NADH-cytochrome b5 reductase 2 OS=Ustilago maydis ... [more]
NB5R1_RAT2.619e-2636.81NADH-cytochrome b5 reductase 1 OS=Rattus norvegicu... [more]
NB5R3_CANFA3.420e-2635.68NADH-cytochrome b5 reductase 3 OS=Canis familiaris... [more]
NB5R1_MOUSE9.951e-2636.81NADH-cytochrome b5 reductase 1 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34007A08EF PostHarvC1 Citrus clementina cDNA clone C34007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930389 ID=FC930389; Name=FC930389; organism=Citrus clementina; type=EST; length=730bp
AGAAGATAAGAAATGGAATAAACCGCACACTATTTTCTCTCCCACCCATT
TACTGGTTCCATTTCTTGTTTTGATTTTTGAGTTAAAAATTTATTCTTTA
TATACATATATTGATAAATCCGAGGCTTTTAGTTCTTCTATTGGTGAGCT
TTTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAGATGTTCAGC
TTCTCGTTGGTGGAGCTGTGGCTGTTTTGGCCATTGCTGTTGGTGCTGCT
TACTTGTATTCCTCTAAGAAGCCCAAAGTTTCCTTAGATCCTGAGAATTT
CAAGGAGTTTAAGCTTGTCAAGCGATTACAGCTGAGCCATAATGTGGCAA
AGTTCACATTTGAACTCCCAACGCCTACATCGGTTTTGGGTCTTCCAATT
GGACAACATATAAGTTGCAGGGGCAAGGATAGTCAGGGTGAAGAGGTTAT
TAAACCATATACCCCAACCACATTGGATTCTGATGTTGGTCATTTTGAAT
TGGTTATTAAGATGTACCCCCAAGGAAGGATGTCACACCATTTCCGTGAG
ATGCGTGTTGGTGATTATCTTGCCGTGAAGGGACCCAAGGGTCGATTCAG
GTATCAACCTGGCCAGGTCAGAGCATTTGGGATGACTGCAGGAGGTTCTG
GCATCACTCCAATGTTTCCAGTTACTAGAGCCATATTAGAGAACCCAAAT
NGACAGACAAAGGTGCACCTCATTTATGCC
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