FC930389

Overview
NameFC930389
Unique NameFC930389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5076 contig Ccv1_Contig5076:182..911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R3_PIG (NADH-cytochrome b5 reductase 3 (Fragment) OS=Sus scrofa GN=CYB5R3 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.697e-25
Identity = 65/179 (36.31%), Postives = 103/179 (57.54%), Query Frame = 2
Query:  272 PKVSLDPENFK-EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            P ++L+  + K   +L+ +  ++H+  +F F LP+P  +LGLP+GQHI    +   G  VI+PYTP + D D G  +LVIK+Y +         G+MS +   M++GD +  +GP        KG+F  +P +        V++ GM AGG+GITPM  V RAI+++P+  T  HL++A
Sbjct:    3 PAITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPEHILGLPVGQHIYLSAR-IDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFA 180          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R3_RAT (NADH-cytochrome b5 reductase 3 OS=Rattus norvegicus GN=Cyb5r3 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.217e-25
Identity = 66/185 (35.68%), Postives = 100/185 (54.05%), Query Frame = 2
Query:  254 LYSSKKPKVSLDPENFK-EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRYQPG----------------QVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            L+    P ++L+  + K   +L+ +  +SH+  +F F LP+P  +LGLPIGQHI    +   G  VI+PYTP + D D G  +LV+K+Y +         G+MS +   M +GD +  +GP G   YQ                   V++ GM AGG+GITPM  V RA+L++PN  T  +L++A
Sbjct:   26 LFQRSSPAITLENPDIKYPLRLIDKEIISHDTRRFRFALPSPQHILGLPIGQHIYLSTR-IDGNLVIRPYTPVSSDDDKGFVDLVVKVYFKDTHPKFPAGGKMSQYLENMNIGDTIEFRGPNGLLVYQGKGKFAIRADKKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFA 209          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R1_HUMAN (NADH-cytochrome b5 reductase 1 OS=Homo sapiens GN=CYB5R1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.781e-25
Identity = 69/182 (37.91%), Postives = 100/182 (54.95%), Query Frame = 2
Query:  263 SKKPKVSL-DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            S++P+V+L DP      +L+ +  +SHN  +F F LPT    LGLP+G+HI    +   G  VI+PYTP T D D G+ +LVIK+Y +         G+MS +   ++VGD +  +GP        KG F  QP +         +  GM AGG+GITPM  + RAIL+ P   T+  L++A
Sbjct:   33 SRRPQVTLLDPNEKYLLRLLDKTTVSHNTKRFRFALPTAHHTLGLPVGKHIYLSTR-IDGSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKVGDVVEFRGPSGLLTYTGKGHFNIQPNKKSPPEPRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFLLFA 213          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: MCR1A_VANPO (NADH-cytochrome b5 reductase 2-A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=MCR1A PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.938e-25
Identity = 56/166 (33.73%), Postives = 96/166 (57.83%), Query Frame = 2
Query:  251 YLYSS------KKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            Y YSS      +  KV +   N+ +  + +  ++SH+  +FTF+ P+  SV GL +   +  +    +G  VI+PYTP +   + G  +LVIK YP G+M++H   ++V D L+ KGP  ++++ P    +  +  GG+GITP++ +  AI +NPN +TK+ L Y+
Sbjct:   27 YYYSSGAFLRNESSKVFIGDNNWIDLPISRIEEISHDTKRFTFKYPSQDSVSGLVVASALLTKFVTPKGSNVIRPYTPVSDVDEKGSLDLVIKHYPDGKMTNHIFSLKVNDTLSFKGPIPKWKWVPNSFESITLIGGGTGITPLYQLIHAITKNPNDKTKIRLFYS 192          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R2_XENLA (NADH-cytochrome b5 reductase 2 OS=Xenopus laevis GN=cyb5r2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.450e-25
Identity = 65/182 (35.71%), Postives = 98/182 (53.85%), Query Frame = 2
Query:  260 SSKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            + K P   LDP       L+++ ++SH+  KF F LP+   VLGLP+GQHI    K   G  V++ YTP + D   GH +LV+K+Y +         G+MS H   +++G+ +  +GP        KG+F  +P +         +  GM AGG+GITPM  + R I ++PN  TK +LI+A
Sbjct:   24 AKKAPVTLLDPNAKYPLPLIEKQEISHDTKKFRFGLPSAEHVLGLPVGQHIYLSAK-VNGSLVVRAYTPVSSDEVKGHVDLVVKVYYKNVNPKFPDGGKMSQHLDSLKIGETIDFRGPNGLLVYKGKGKFAIRPDKKAEPKIKVAKHVGMLAGGTGITPMLQLIRQITQDPNDNTKCYLIFA 204          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R3_MOUSE (NADH-cytochrome b5 reductase 3 OS=Mus musculus GN=Cyb5r3 PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.877e-24
Identity = 65/185 (35.14%), Postives = 100/185 (54.05%), Query Frame = 2
Query:  254 LYSSKKPKVSLDPENFK-EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRYQPG----------------QVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            L+    P ++L+  + K   +L+ +  +S +  +F F LP+P  +LGLPIGQHI    +   G  VI+PYTP + D D G  +LV+K+Y +         G+MS +   M++GD +  +GP G   YQ                   V++ GM AGG+GITPM  V RA+L++PN  T  +L++A
Sbjct:   26 LFQRSTPAITLENPDIKYPLRLIDKEVISPDTRRFRFALPSPQHILGLPIGQHIYLSTR-IDGNLVIRPYTPVSSDDDKGFVDLVVKVYFKDTHPKFPAGGKMSQYLENMKIGDTIEFRGPNGLLVYQGKGKFAIRADKKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFA 209          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R2_XENTR (NADH-cytochrome b5 reductase 2 OS=Xenopus tropicalis GN=cyb5r2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.451e-24
Identity = 63/182 (34.62%), Postives = 97/182 (53.30%), Query Frame = 2
Query:  260 SSKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            + K P   LDP       L+++ ++SH+  KF F LP+   VLGLP+GQH+    K   G  V++ YTP + D   GH +L++K+Y +         G+MS H   +++G+ +  +GP        KG+F  +P +         +  GM AGG+GITPM  + R I ++PN  TK  LI+A
Sbjct:   32 AKKAPLTLLDPNAKYPLPLIEKQEISHDTKKFRFGLPSQEHVLGLPVGQHVYLSAK-INGSLVVRAYTPVSSDEVKGHVDLIVKVYYKNVHPKFPEGGKMSQHLDSLKIGETIDFRGPNGLLVYKEKGKFAIRPDKKSEPKLKVAKHVGMLAGGTGITPMLQLIRQITQDPNDNTKCSLIFA 212          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: MCR1_COCIM (NADH-cytochrome b5 reductase 2 OS=Coccidioides immitis GN=MCR1 PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.181e-24
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = 2
Query:  293 ENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEE-VIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIY 727
            + + + KL     LSHNV +F FE P   SV GL I   +  + K  + E+  I+PYTP + +   G+ +LV+K YP G MS H   M VG  L+ KGP  ++ ++  +     M AGG+GITPM+ + R I  NPN +TKV L++
Sbjct:   74 QGWVDLKLAGIETLSHNVKRFRFEFPDSESVSGLHIASALLTKYKGPKDEKPTIRPYTPVSEEEQPGYLDLVVKQYPNGPMSTHLHNMAVGQQLSFKGPIPKYPWEQNKHDHICMIAGGTGITPMYQIIRKIFNNPNDKTKVTLVF 219          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: MCR1_YEAST (NADH-cytochrome b5 reductase 2 OS=Saccharomyces cerevisiae GN=MCR1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.131e-24
Identity = 52/151 (34.44%), Postives = 91/151 (60.26%), Query Frame = 2
Query:  275 KVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIY 727
            KV    + + +  + K  + SH+  +FTF+LPT  S +GL +   +  +    +G  V++PYTP +  S  GHF+LV+K Y  G+M+ H   ++  D ++ KGP  ++++QP Q ++  +   G+GI P++ +   I+ENPN +TKV+L+Y
Sbjct:   45 KVFKGDDKWIDLPISKIEEESHDTRRFTFKLPTEDSEMGLVLASALFAKFVTPKGSNVVRPYTPVSDLSQKGHFQLVVKHYEGGKMTSHLFGLKPNDTVSFKGPIMKWKWQPNQFKSITLLGAGTGINPLYQLAHHIVENPNDKTKVNLLY 195          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: MCR1_YEAS7 (NADH-cytochrome b5 reductase 2 OS=Saccharomyces cerevisiae (strain YJM789) GN=MCR1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.131e-24
Identity = 52/151 (34.44%), Postives = 91/151 (60.26%), Query Frame = 2
Query:  275 KVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIY 727
            KV    + + +  + K  + SH+  +FTF+LPT  S +GL +   +  +    +G  V++PYTP +  S  GHF+LV+K Y  G+M+ H   ++  D ++ KGP  ++++QP Q ++  +   G+GI P++ +   I+ENPN +TKV+L+Y
Sbjct:   45 KVFKGDDKWIDLPISKIEEESHDTRRFTFKLPTEDSEMGLVLASALFAKFVTPKGSNVVRPYTPVSDLSQKGHFQLVVKHYEGGKMTSHLFGLKPNDTVSFKGPIMKWKWQPNQFKSITLLGAGTGINPLYQLAHHIVENPNDKTKVNLLY 195          
The following BLAST results are available for this feature:
BLAST of FC930389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
NB5R3_PIG1.697e-2536.31NADH-cytochrome b5 reductase 3 (Fragment) OS=Sus s... [more]
NB5R3_RAT2.217e-2535.68NADH-cytochrome b5 reductase 3 OS=Rattus norvegicu... [more]
NB5R1_HUMAN3.781e-2537.91NADH-cytochrome b5 reductase 1 OS=Homo sapiens GN=... [more]
MCR1A_VANPO4.938e-2533.73NADH-cytochrome b5 reductase 2-A OS=Vanderwaltozym... [more]
NB5R2_XENLA6.450e-2535.71NADH-cytochrome b5 reductase 2 OS=Xenopus laevis G... [more]
NB5R3_MOUSE1.877e-2435.14NADH-cytochrome b5 reductase 3 OS=Mus musculus GN=... [more]
NB5R2_XENTR2.451e-2434.62NADH-cytochrome b5 reductase 2 OS=Xenopus tropical... [more]
MCR1_COCIM4.181e-2439.73NADH-cytochrome b5 reductase 2 OS=Coccidioides imm... [more]
MCR1_YEAST7.131e-2434.44NADH-cytochrome b5 reductase 2 OS=Saccharomyces ce... [more]
MCR1_YEAS77.131e-2434.44NADH-cytochrome b5 reductase 2 OS=Saccharomyces ce... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34007A08EF PostHarvC1 Citrus clementina cDNA clone C34007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930389 ID=FC930389; Name=FC930389; organism=Citrus clementina; type=EST; length=730bp
AGAAGATAAGAAATGGAATAAACCGCACACTATTTTCTCTCCCACCCATT
TACTGGTTCCATTTCTTGTTTTGATTTTTGAGTTAAAAATTTATTCTTTA
TATACATATATTGATAAATCCGAGGCTTTTAGTTCTTCTATTGGTGAGCT
TTTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAGATGTTCAGC
TTCTCGTTGGTGGAGCTGTGGCTGTTTTGGCCATTGCTGTTGGTGCTGCT
TACTTGTATTCCTCTAAGAAGCCCAAAGTTTCCTTAGATCCTGAGAATTT
CAAGGAGTTTAAGCTTGTCAAGCGATTACAGCTGAGCCATAATGTGGCAA
AGTTCACATTTGAACTCCCAACGCCTACATCGGTTTTGGGTCTTCCAATT
GGACAACATATAAGTTGCAGGGGCAAGGATAGTCAGGGTGAAGAGGTTAT
TAAACCATATACCCCAACCACATTGGATTCTGATGTTGGTCATTTTGAAT
TGGTTATTAAGATGTACCCCCAAGGAAGGATGTCACACCATTTCCGTGAG
ATGCGTGTTGGTGATTATCTTGCCGTGAAGGGACCCAAGGGTCGATTCAG
GTATCAACCTGGCCAGGTCAGAGCATTTGGGATGACTGCAGGAGGTTCTG
GCATCACTCCAATGTTTCCAGTTACTAGAGCCATATTAGAGAACCCAAAT
NGACAGACAAAGGTGCACCTCATTTATGCC
back to top