FC930389

Overview
NameFC930389
Unique NameFC930389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: MCR1_LODEL (NADH-cytochrome b5 reductase 2 OS=Lodderomyces elongisporus GN=MCR1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.216e-23
Identity = 53/141 (37.59%), Postives = 80/141 (56.74%), Query Frame = 2
Query:  305 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIY 727
            + KL K   L+HN    TFEL  P  V GL     +  +    +G  VI+PYTP +     G  + VIK Y  G+MS+H   ++ G+ L+ KGP  +++++P Q ++  +  GG+GITP++ + R I  NP  +TKV LIY
Sbjct:   53 DLKLKKSEDLTHNTKHLTFELLNPDDVSGLITASMLMTKYVTPKGNNVIRPYTPVSDPDQKGTLDFVIKRYENGKMSNHIHNLKEGETLSFKGPVVKWKWEPNQFKSIALIGGGTGITPLYQLLREITSNPEDKTKVSLIY 193          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: MCR1_ASPCL (NADH-cytochrome b5 reductase 2 OS=Aspergillus clavatus GN=mcr1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.216e-23
Identity = 56/154 (36.36%), Postives = 88/154 (57.14%), Query Frame = 2
Query:  269 KPKVSLDPEN-FKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIY 727
            +PKV    E  + + KL +   LSHN  +  FE     +V GL +   +  + K ++G+ VI+PYTP + +   G+ +LV+K+YP G MS H   M V   L  KGP  ++ ++  + +   + AGG+GITPM+ + R I +NP  QTKV L++
Sbjct:   63 RPKVFTGGEQGWVDLKLSEIENLSHNTKRLRFEFADKEAVSGLQVASALLTKFKPAEGKPVIRPYTPVSDEDQPGYLDLVVKVYPNGPMSEHLHSMNVDQRLEFKGPIPKYPWETNKHKHICLIAGGTGITPMYQLARQIFKNPEDQTKVTLVF 216          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA_SOLLC (Nitrate reductase [NADH] OS=Solanum lycopersicum GN=NIA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.539e-23
Identity = 66/171 (38.60%), Postives = 97/171 (56.73%), Query Frame = 2
Query:  278 VSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHI-SCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRYQ-PGQVRAFG---------MTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            V+L P      KLV +  +SH+V KF F LP+   VLGLP+G+HI  C   D   +  ++ YTPT+   +VG FELV+K+Y +         G+MS H   + +G +L VKGP G   YQ  G     G         M AGG+GITP++ V ++IL++P   T+++++YA
Sbjct:  649 VALIPREKIPCKLVDKQSISHDVRKFKFALPSEDQVLGLPVGKHIFLCATVDD--KLCMRAYTPTSTVDEVGFFELVVKIYFKGVHPKFPNGGQMSQHLDSLPIGAFLDVKGPLGHIEYQGKGNFLVHGKQKFAKKLAMIAGGTGITPVYQVMQSILKDPEDDTEMYVVYA 817          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA2_TOBAC (Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.539e-23
Identity = 66/171 (38.60%), Postives = 98/171 (57.31%), Query Frame = 2
Query:  278 VSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHI-SCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRYQ-PGQVRAFG---------MTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            V+L P      KL+ +  +SH+V KF F LP+   VLGLP+G+HI  C   D   +  ++ YTPT+   +VG+FELV+K+Y +         G+MS +   M +G +L VKGP G   YQ  G     G         M AGG+GITP++ V +AIL++P   T+++++YA
Sbjct:  642 VALIPREKIPCKLIDKQSISHDVRKFRFALPSEDQVLGLPVGKHIFLCAVIDD--KLCMRAYTPTSTIDEVGYFELVVKIYFKGIHPKFPNGGQMSQYLDSMPLGSFLDVKGPLGHIEYQGKGNFLVHGKQKFAKKLAMIAGGTGITPVYQVMQAILKDPEDDTEMYVVYA 810          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA_PETHY (Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.622e-23
Identity = 65/172 (37.79%), Postives = 100/172 (58.14%), Query Frame = 2
Query:  278 VSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHI-SCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRYQPGQ-----------VRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            V+L P      KLV +  +SH+V KF F LP+   VLGLP+G+HI  C   D   +  ++ YTPT+   +VG+FELV+K+Y +         G+MS +   + +G ++ VKGP G   YQ G+            +   M AGG+GITP++ V +AIL++P  +T++H++YA
Sbjct:  647 VALIPREKIPCKLVDKKSISHDVRKFRFALPSEDQVLGLPVGKHIFLCAIIDD--KLCMRAYTPTSTVDEVGYFELVVKIYFKGIVPKFPNGGQMSQYLDSLPLGAFVDVKGPLGHIEYQ-GRGNFLVHGKRKFAKKLAMLAGGTGITPVYQVMQAILKDPEDETEMHVVYA 815          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NB5R2_HUMAN (NADH-cytochrome b5 reductase 2 OS=Homo sapiens GN=CYB5R2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.622e-23
Identity = 62/180 (34.44%), Postives = 100/180 (55.56%), Query Frame = 2
Query:  266 KKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMY-----PQ----GRMSHHFREMRVGDYLAVKGPKGR-FRYQPGQVRA---------------FGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            ++P    DPE      L+++ ++SHN  +F F LP+P  VLGLP+G ++    K    E V++ YTP + D D G  +L+IK+Y     PQ    G+M+ +   M++G+ +  +GP+GR F + PG +                  GM AGG+GITPM  + R I ++P+ +T++ LI+A
Sbjct:    6 REPITLQDPEAKYPLPLIEKEKISHNTRRFRFGLPSPDHVLGLPVGNYVQLLAK-IDNELVVRAYTPVSSDDDRGFVDLIIKIYFKNVHPQYPEGGKMTQYLENMKIGETIFFRGPRGRLFYHGPGNLGIRPDQTSEPKKTLADHLGMIAGGTGITPMLQLIRHITKDPSDRTRMSLIFA 184          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA_LOTJA (Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.037e-23
Identity = 65/172 (37.79%), Postives = 95/172 (55.23%), Query Frame = 2
Query:  275 KVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHI-SCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            KV+L P      KL+ R  +SH+V  F F LP+    LGLP+G+HI  C   D  G+  ++ YTPT+   +VG+FELV+K+Y +         G MS H   + +G  L VKGP G   Y          +    +   M AGG+GITP++ V +AIL++P   TK++++YA
Sbjct:  638 KVALIPREKIPCKLISRTSISHDVRVFRFALPSEDQQLGLPVGKHIFLCATVD--GKLCMRAYTPTSGVDEVGYFELVVKVYFKGVHPKFPNGGAMSQHLDSLPIGSDLDVKGPLGHIEYTGRGNFLVHGKHRFAKKLAMLAGGTGITPIYQVAQAILKDPEDHTKMYVVYA 807          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA_SPIOL (Nitrate reductase [NADH] OS=Spinacia oleracea GN=NIA PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.030e-22
Identity = 61/171 (35.67%), Postives = 99/171 (57.89%), Query Frame = 2
Query:  278 VSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHI-SCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            V+L+P      KL++++ LSH+V +F F LP+   VLGLP+G+HI  C   D   +  ++ YTP++    VG+F+LV+K+Y +         G MS H   + +G  + VKGP G   Y          +P   +   M +GG+GITP++ V +AIL++P  +T++H++YA
Sbjct:  665 VALNPRVKIPCKLIEKVSLSHDVRRFRFGLPSEDQVLGLPVGKHIFLCANVDD--KLCMRAYTPSSTIDVVGYFDLVVKVYFKDVHPRFPNGGVMSQHLDSLSLGSIVDVKGPLGHIEYLGKGNFTVHGKPKFAKKLAMISGGTGITPIYQVMQAILKDPEDKTEMHVVYA 833          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA2_PHAVU (Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris GN=NIA2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.345e-22
Identity = 62/171 (36.26%), Postives = 96/171 (56.14%), Query Frame = 2
Query:  278 VSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHI-SCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            V+L+P      KLV +  +SH+V  F FE+P+   +LGLP+G+HI  C   D  G+  ++ YTPT+   +VG F+L+IK+Y +         G MS +   + +G  L VKGP G   Y          +    +   M AGG+GITP++ V +AIL++P   T++H++YA
Sbjct:  629 VALNPRQKIPCKLVSKTSISHDVRLFRFEMPSKNQLLGLPVGKHIFLCATID--GKLCMRAYTPTSSVEEVGFFDLLIKVYFKDVHPKFPNGGLMSQYLESLSIGSMLDVKGPLGHIEYTGRGNFTVNGKSRFAKRLAMLAGGTGITPIYQVAQAILKDPEDLTEMHVVYA 797          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA1_ORYSJ (Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica GN=NIA1 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.345e-22
Identity = 63/173 (36.42%), Postives = 94/173 (54.34%), Query Frame = 2
Query:  272 PKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMY---------PQGRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFPVTRAIL-ENPNXQTKVHLIYA 730
            P     P +    +LV + +LS +V  F F LP+   VLGLP+G+HI       +G+  ++ YTPT++  +VGHF+L+IK+Y           G M+ +   + VG Y+ VKGP G   Y          +P   R   M AGGSGITPM+ V +++L + P   T++HL+YA
Sbjct:  649 PVALSSPRDKVPCQLVDKKELSRDVRLFRFALPSSDQVLGLPVGKHIFVCA-SIEGKLCMRAYTPTSMVDEVGHFDLLIKVYFKNEHPKFPDGGLMTQYLDSLPVGAYIDVKGPLGHVEYTGRGEFVINGKPRNARRLAMIAGGSGITPMYQVIQSVLRDQPEDTTEMHLVYA 820          
The following BLAST results are available for this feature:
BLAST of FC930389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MCR1_LODEL1.216e-2337.59NADH-cytochrome b5 reductase 2 OS=Lodderomyces elo... [more]
MCR1_ASPCL1.216e-2336.36NADH-cytochrome b5 reductase 2 OS=Aspergillus clav... [more]
NIA_SOLLC3.539e-2338.60Nitrate reductase [NADH] OS=Solanum lycopersicum G... [more]
NIA2_TOBAC3.539e-2338.60Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN... [more]
NIA_PETHY4.622e-2337.79Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA... [more]
NB5R2_HUMAN4.622e-2334.44NADH-cytochrome b5 reductase 2 OS=Homo sapiens GN=... [more]
NIA_LOTJA6.037e-2337.79Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA... [more]
NIA_SPIOL1.030e-2235.67Nitrate reductase [NADH] OS=Spinacia oleracea GN=N... [more]
NIA2_PHAVU1.345e-2236.26Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris G... [more]
NIA1_ORYSJ1.345e-2236.42Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC34007A08EF PostHarvC1 Citrus clementina cDNA clone C34007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930389 ID=FC930389; Name=FC930389; organism=Citrus clementina; type=EST; length=730bp
AGAAGATAAGAAATGGAATAAACCGCACACTATTTTCTCTCCCACCCATT
TACTGGTTCCATTTCTTGTTTTGATTTTTGAGTTAAAAATTTATTCTTTA
TATACATATATTGATAAATCCGAGGCTTTTAGTTCTTCTATTGGTGAGCT
TTTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAGATGTTCAGC
TTCTCGTTGGTGGAGCTGTGGCTGTTTTGGCCATTGCTGTTGGTGCTGCT
TACTTGTATTCCTCTAAGAAGCCCAAAGTTTCCTTAGATCCTGAGAATTT
CAAGGAGTTTAAGCTTGTCAAGCGATTACAGCTGAGCCATAATGTGGCAA
AGTTCACATTTGAACTCCCAACGCCTACATCGGTTTTGGGTCTTCCAATT
GGACAACATATAAGTTGCAGGGGCAAGGATAGTCAGGGTGAAGAGGTTAT
TAAACCATATACCCCAACCACATTGGATTCTGATGTTGGTCATTTTGAAT
TGGTTATTAAGATGTACCCCCAAGGAAGGATGTCACACCATTTCCGTGAG
ATGCGTGTTGGTGATTATCTTGCCGTGAAGGGACCCAAGGGTCGATTCAG
GTATCAACCTGGCCAGGTCAGAGCATTTGGGATGACTGCAGGAGGTTCTG
GCATCACTCCAATGTTTCCAGTTACTAGAGCCATATTAGAGAACCCAAAT
NGACAGACAAAGGTGCACCTCATTTATGCC
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