FC930389

Overview
NameFC930389
Unique NameFC930389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA1_PHAVU (Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris GN=NIA1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.638e-21
Identity = 58/172 (33.72%), Postives = 94/172 (54.65%), Query Frame = 2
Query:  275 KVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHIS-CRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGR---------MSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            +V+L+P      KL+ +  +SH+V    F LP    V+GLP+G H+  C   D +    ++ YTPT+   +VG F+LV+K+Y +G          MS H   + +G  + VKGP G   Y          +P   +   M AGG+GITP++ V +AIL++P  +T+++++YA
Sbjct:  619 EVALNPREKIPCKLLSKTSISHDVRLLRFALPAEDQVMGLPVGNHVFLCATVDEK--LCMRAYTPTSSVDEVGFFDLVVKVYFKGVHPNFPNGGIMSQHLDSLPIGSVVDVKGPLGHIEYTGRGNFLVHGKPRFAKRLTMLAGGTGITPIYQVVQAILKDPEDRTEMYVVYA 788          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA1_ARATH (Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana GN=NIA1 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20
Identity = 52/168 (30.95%), Postives = 92/168 (54.76%), Query Frame = 2
Query:  284 LDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            ++P      +L+++  +SH+V KF F LP+    LGLP+G+H+     +   +  ++ YTPT+    VGH +LV+K+Y +         G MS H   + +G  + +KGP G   Y          +P   +   M AGG+GITP++ + ++IL +P  +T+++++YA
Sbjct:  657 VNPREKIPVRLIEKTSISHDVRKFRFALPSEDQQLGLPVGKHVFVCA-NINDKLCLRAYTPTSAIDAVGHIDLVVKVYFKDVHPRFPNGGLMSQHLDSLPIGSMIDIKGPLGHIEYKGKGNFLVSGKPKFAKKLAMLAGGTGITPIYQIIQSILSDPEDETEMYVVYA 823          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: MCR1_CHAGB (NADH-cytochrome b5 reductase 2 OS=Chaetomium globosum GN=MCR1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20
Identity = 56/157 (35.67%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  260 SSKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEE-VIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIY 727
            S  K  ++   + +   KL +   ++HN  +  F LP    V G+ +   I  + K    E+ VI+PYTPT  +   G+ +L++K YP G MS H  +M  G  L VKGP  ++ +   +     + AGG+GITPMF + RAI  NP+ QTKV L++
Sbjct:   86 SEVKQALTGGEQGWVSLKLEEVEIVNHNSKRLRFRLPEDDMVSGVHVASAILTKFKPVDAEKPVIRPYTPTNDEDARGYLDLLVKKYPNGPMSTHLHDMVPGQRLDVKGPLPKYPWTANKHGHIALVAGGTGITPMFQLCRAIFNNPDDQTKVTLVF 242          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA_BETVE (Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN=NIA1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.644e-20
Identity = 58/160 (36.25%), Postives = 89/160 (55.62%), Query Frame = 2
Query:  311 KLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHIS-CRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            KLV +  LSH+V  F   LP+   VLGLP+G+H+  C   D +    ++ YTPT+   +VG+ +LV+K+Y +         G MS H   + +G  L VKGP G   Y          +P   +   M AGG+GITP++ V +AIL++P  +T++ ++YA
Sbjct:  648 KLVYKKSLSHDVRLFRLALPSDDQVLGLPVGKHVFLCATIDDK--LCMRAYTPTSTIDEVGYLDLVVKIYFKNSNPRFPNGGLMSQHLDSLPIGSVLHVKGPLGHVEYTGRGNFLVHGEPKFAKRLAMVAGGTGITPIYQVIQAILKDPEDETEMFVVYA 805          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA2_ARATH (Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.804e-20
Identity = 57/159 (35.85%), Postives = 91/159 (57.23%), Query Frame = 2
Query:  311 KLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMY-----PQ----GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            +LV++  +SH+V KF F LP    VLGLP+G+HI      +  +  ++ YTP++    VG+FELV+K+Y     P+    G MS +   + +G  L +KGP G   Y          +P       M AGG+GITP++ + +AIL++P  +T++++IYA
Sbjct:  666 QLVEKTSISHDVRKFRFALPVEDMVLGLPVGKHIFLCATIND-KLCLRAYTPSSTVDVVGYFELVVKIYFGGVHPRFPNGGLMSQYLDSLPIGSTLEIKGPLGHVEYLGKGSFTVHGKPKFADKLAMLAGGTGITPVYQIIQAILKDPEDETEMYVIYA 823          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA1_SOYBN (Inducible nitrate reductase [NADH] 1 OS=Glycine max GN=INR1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.662e-20
Identity = 60/171 (35.09%), Postives = 93/171 (54.39%), Query Frame = 2
Query:  278 VSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHIS-CRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGR---------MSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            V+L P      KL+ +  +SH+V  F F LP+   ++GL +G+HI  C   D +    ++ YTPT+   +VG+F+LV+K+Y +G          MS H   + +G  L VKGP G   Y          +P       M AGG+GITP++ V +AIL++P   T++H++YA
Sbjct:  625 VALIPREKIPCKLISKTSISHDVRLFRFGLPSDGLLMGLAVGKHIFLCVTVDEK--LCMRAYTPTSSVHEVGYFDLVVKVYFKGVHPKFPNGGIMSQHLDSLPIGSVLDVKGPLGHIEYTGRGNFLVHGKPRFATRLAMLAGGTGITPIYQVVQAILKDPEDCTEMHVVYA 793          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA7_HORVU (Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=NAR-7 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20
Identity = 58/168 (34.52%), Postives = 90/168 (53.57%), Query Frame = 2
Query:  287 DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMY---------PQGRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFPVTRAIL-ENPNXQTKVHLIYA 730
            +P      +LV +  +SHNV  F F LP+P   LGLP+G+H+      + G+  ++ YTPT+   +VGH EL+IK+Y           G MS +   + +G  + +KGP G   Y          +    R   M AGG+GITP++ V +A+L + P+  T++HL+YA
Sbjct:  628 NPREKVRCRLVDKKSMSHNVRLFRFALPSPDQKLGLPVGKHVYVCA-STGGKLCMRAYTPTSSVEEVGHVELLIKIYFKDEDPKFPAGGLMSQYLDALPLGAPVDIKGPVGHIEYAGRGAFTVGGERRFARRLAMVAGGTGITPVYQVIQAVLRDQPDDTTEMHLVYA 794          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA2_BRANA (Nitrate reductase [NADH], clone PBNBR1412 OS=Brassica napus GN=NIA2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20
Identity = 54/168 (32.14%), Postives = 89/168 (52.98%), Query Frame = 2
Query:  284 LDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIYA 730
            ++P       L+++  +SH+V +F F LP+    LGLP+G+HI     +   +  ++ YTPT+    VGH +LV+K+Y +         G MS H   + +G  L +KGP G   Y          +P   +   M AGG GITP++ V ++IL +P  +T++ ++YA
Sbjct:  651 VNPREKVPVTLIEKTSISHDVRRFRFALPSEDQQLGLPVGKHIFLCA-NINDKLCLRAYTPTSTVDAVGHIDLVVKVYFKDVHPRFPNGGLMSQHLDSLPIGSVLNIKGPLGHIEYLGKGNFMVTGKPKFAKKLAMLAGGPGITPIYQVIQSILSDPEDETEMFVVYA 817          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: NIA2_HORVU (Nitrate reductase [NADH] (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20
Identity = 59/162 (36.42%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  311 KLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHI-SCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVG-DYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFPVTRAIL-ENPNXQTKVHLIYA 730
            +LV + +LSH+V  F F LP+   VLGLP+G+HI  C   D  G+  ++ YTPT++  ++G FEL++K+Y +         G M+ +   ++VG   + VKGP G   Y          +  + R   M  G SGITPM+ V +A+L + P  +T++HL+YA
Sbjct:  657 RLVDKKELSHDVRLFRFALPSSDQVLGLPVGKHIFVCATID--GKLCMRAYTPTSMVDEIGQFELLVKVYFRDEHPKFPNGGLMTQYLESLQVGSSSIDVKGPLGHVEYTGRGNFVINGKQRRARRLAMICGSSGITPMYQVIQAVLRDQPEDETEMHLVYA 816          
BLAST of FC930389 vs. ExPASy Swiss-Prot
Match: MCR1_KLULA (NADH-cytochrome b5 reductase 2 OS=Kluyveromyces lactis GN=MCR1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20
Identity = 49/159 (30.82%), Postives = 80/159 (50.31%), Query Frame = 2
Query:  251 YLYSSKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFPVTRAILENPNXQTKVHLIY 727
            Y   +   K  L    + +  ++K  +LSH+  +FTF LP    V GL     I  +    +G  VI+PYTP + +   G  ELV+K Y  G+ + H   ++  D ++ KGP  ++ ++P    +  +   G+GI P++ +   I ENP   TK+HL Y
Sbjct:   33 YSIMNDTSKAFLGDNEWIDLPIIKIEKLSHDTKRFTFALPKKDQVSGLITASCILAKFVTPKGSNVIRPYTPVSDNGTKGKMELVVKHYENGKFTSHLFGLKENDTVSFKGPITKWEWKPNSYDSITLLGAGTGINPLYQLVHHIAENPEDNTKIHLYY 191          
The following BLAST results are available for this feature:
BLAST of FC930389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
NIA1_PHAVU9.638e-2133.72Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris G... [more]
NIA1_ARATH1.259e-2030.95Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana... [more]
MCR1_CHAGB1.259e-2035.67NADH-cytochrome b5 reductase 2 OS=Chaetomium globo... [more]
NIA_BETVE1.644e-2036.25Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN... [more]
NIA2_ARATH2.804e-2035.85Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana... [more]
NIA1_SOYBN3.662e-2035.09Inducible nitrate reductase [NADH] 1 OS=Glycine ma... [more]
NIA7_HORVU6.247e-2034.52Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=... [more]
NIA2_BRANA6.247e-2032.14Nitrate reductase [NADH], clone PBNBR1412 OS=Brass... [more]
NIA2_HORVU8.159e-2036.42Nitrate reductase [NADH] (Fragment) OS=Hordeum vul... [more]
MCR1_KLULA8.159e-2030.82NADH-cytochrome b5 reductase 2 OS=Kluyveromyces la... [more]

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Properties
Property NameValue
Genbank descriptionC34007A08EF PostHarvC1 Citrus clementina cDNA clone C34007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930389 ID=FC930389; Name=FC930389; organism=Citrus clementina; type=EST; length=730bp
AGAAGATAAGAAATGGAATAAACCGCACACTATTTTCTCTCCCACCCATT
TACTGGTTCCATTTCTTGTTTTGATTTTTGAGTTAAAAATTTATTCTTTA
TATACATATATTGATAAATCCGAGGCTTTTAGTTCTTCTATTGGTGAGCT
TTTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAGATGTTCAGC
TTCTCGTTGGTGGAGCTGTGGCTGTTTTGGCCATTGCTGTTGGTGCTGCT
TACTTGTATTCCTCTAAGAAGCCCAAAGTTTCCTTAGATCCTGAGAATTT
CAAGGAGTTTAAGCTTGTCAAGCGATTACAGCTGAGCCATAATGTGGCAA
AGTTCACATTTGAACTCCCAACGCCTACATCGGTTTTGGGTCTTCCAATT
GGACAACATATAAGTTGCAGGGGCAAGGATAGTCAGGGTGAAGAGGTTAT
TAAACCATATACCCCAACCACATTGGATTCTGATGTTGGTCATTTTGAAT
TGGTTATTAAGATGTACCCCCAAGGAAGGATGTCACACCATTTCCGTGAG
ATGCGTGTTGGTGATTATCTTGCCGTGAAGGGACCCAAGGGTCGATTCAG
GTATCAACCTGGCCAGGTCAGAGCATTTGGGATGACTGCAGGAGGTTCTG
GCATCACTCCAATGTTTCCAGTTACTAGAGCCATATTAGAGAACCCAAAT
NGACAGACAAAGGTGCACCTCATTTATGCC
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