FC930390

Overview
NameFC930390
Unique NameFC930390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: S15A4_XENLA (Solute carrier family 15 member 4 OS=Xenopus laevis GN=slc15a4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 61/218 (27.98%), Postives = 101/218 (46.33%), Query Frame = 2
Query:  113 VIGNETFEKLGTTGTSSNLLVYLT-TIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGN--------------QDSGACPGPTPWQLA-FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 718
            V+ +E  E++   G +SNL+++L   IF  +   A+  + +F G T   +    +L+D   GR+  +  + V   LGML+  + +  S      CG+                   CP P+    A  LF GL ++ +G G ++     FGADQ     + G +    FFNW+Y++     +ISL  + YVQ +V +  G  IPA  + +S  +F  G
Sbjct:   37 VLLSELLERVAFYGITSNLVLFLNGQIFGWEGTQASQALLLFMGITYLVSPFAGWLADALLGRFYVILGSMVLYLLGMLLFPMVS-YSGTRTAFCGDIQWAQIENCSRSNASSDDTCPEPSRRYCAPALFLGLIIVGLGVGSVKANITPFGADQVK---DRGPEATRRFFNWFYWSINLGAIISLGGVAYVQQNVEFLIGYIIPAVCIGVSFLVFLCG 250          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: S15A4_HUMAN (Solute carrier family 15 member 4 OS=Homo sapiens GN=SLC15A4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 60/208 (28.85%), Postives = 95/208 (45.67%), Query Frame = 2
Query:  113 VIGNETFEKLGTTGTSSNLLVYLTTI-FNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA-----FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 718
            V+  E  E+    G +SNL+++L    F  +   A+  + +F G T   +  G +L+D   GR + +  +     LGML   L AA +      CG+     C  P P   A       F GL L+ +G   ++     FGADQ     + G +    FFNW+Y++     ++SL  I Y+Q +VS+  G  IP   + L+  +F  G
Sbjct:   40 VLLTELLERAAFYGITSNLVLFLNGAPFCWEGAQASEALLLFMGLTYLGSPFGGWLADARLGRARAILLSLALYLLGMLAFPLLAAPAT-RAALCGSARLLNCTAPGPDAAARCCSPATFAGLVLVGLGVATVKANITPFGADQVK---DRGPEATRRFFNWFYWSINLGAILSLGGIAYIQQNVSFVTGYAIPTVCVGLAFVVFLCG 243          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: PEPT3_CAEEL (Peptide transporter 3 OS=Caenorhabditis elegans GN=pept-3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.015e-15
Identity = 56/211 (26.54%), Postives = 99/211 (46.92%), Query Frame = 2
Query:  110 FVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPT-PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-------WAWGLGIPAFMMFLSCAMFFLG 718
            F++GNE  E+    G  + L +YL T        AT + ++F+       L+G+ ++D+ FGR+K + + S    +G ++LSL                 GA P  + P + +  F+GL ++    G I+PC  AF ADQF   TE  K   + FF+++YF      + ++ +   ++  V        +    G+P  +M L+  +F +G
Sbjct:   19 FMLGNEFCERFSFYGMKTILFIYLITEHEFSPSKATFIYHLFTCIAYLTPLIGSIMADSVFGRFKVILYGSSIYVVGHVLLSL-----------------GAVPFLSYPIRSSLDFSGLFVIAFATGCIKPCVSAFAADQF---TEDQKDLRSQFFSFFYFAINGGSLFAIIITPILRGRVQCFGNAHCFPLAFGVPGVLMLLALILFLMG 209          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: S15A1_CANFA (Solute carrier family 15 member 1 OS=Canis familiaris GN=SLC15A1 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 56/215 (26.05%), Postives = 96/215 (44.65%), Query Frame = 2
Query:  101 SMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI---------VYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 718
            S+ F++ NE  E+    G  + L++Y           +T + + F        +LGA ++D++ G++KT+   S+   +G  V     A+S ++  D  + +    P      +A    GL L+ +G GGI+PC  AFG DQF    E  +     FF+ +Y       +IS  V          +Y Q    +    G+PA +M +S  +F +G
Sbjct:   15 SIFFIVVNEFCERFSYYGMRALLILYFRRFIGWDDNLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQAV----TAVSSIN--DLTDYNKDGTPDNLSVHVALSMIGLALIALGTGGIKPCVSAFGGDQFEEGQEKQR---NRFFSIFYLAINAGSLISTIVTPMLRVHECGIYSQK-ACYPLAFGVPAALMAVSLIVFVIG 219          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: PEPT1_CAEEL (Peptide transporter family 1 OS=Caenorhabditis elegans GN=pept-1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 62/221 (28.05%), Postives = 99/221 (44.80%), Query Frame = 2
Query:   89 RGW-KSMPFVIGNETFEKLGTTGTSSNLLVYLTTIFNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAA---ISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITS-FFNWYYFTFTFAMMISLTVIVYVQS------DVSWAWGLGIPAFMMFLSCAMFFLG 718
            R W K+   ++ NE  E+    G  + L  YL  +       +T   N F+       LLG+ ++D Y G++ T+   S+   +G +VL+L +     S +H                PW      +GL ++  G GGI+PC  AFG DQF    E G++ + S FF+ +YF+     MIS  +    +S      D  +    GIPA +M ++  +F  G
Sbjct:   42 RHWPKTTLCIVSNEFCERFSYYGMRTVLTFYLLNVLKFTDSQSTIFFNGFTVLCYTTPLLGSIVADGYIGKFWTIFSVSILYAIGQVVLALASTKNFQSSVH----------------PW---MDLSGLLIIAFGTGGIKPCVSAFGGDQF----ELGQERMLSLFFSMFYFSINAGSMISTFISPIFRSQPCLGQDSCYPMAFGIPAILMIVATLVFMGG 239          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: S15A4_RAT (Solute carrier family 15 member 4 OS=Rattus norvegicus GN=Slc15a4 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.800e-14
Identity = 58/213 (27.23%), Postives = 94/213 (44.13%), Query Frame = 2
Query:  125 ETFEKLGTTGTSSNLLVYLTTI-FNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAA-------ISKLHPPDCGN------QDSGACPGPTPWQLA-FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 718
            E  E+    G ++NL+++L    FN +   A+  + +F G T   +  G +L+D   GR + +  +     LGML   L AA           HP    N        +  CP     + A   F GL L+ +G   ++     FGADQ     + G +    FFNW+Y++     ++SL  I Y+Q +VS+  G  IP   + ++  +F  G
Sbjct:   35 ELLERAAFYGVTANLVLFLNGAPFNWEGAQASQALLLFMGLTYLGSPFGGWLADARLGRARAILLSLALYLLGMLAFPLLAAPRSRSFLCGDPHPELVRNCSAPFPNGTAVCPDAAARRCAPATFAGLVLVGLGVATVKANITPFGADQVK---DRGPEATRRFFNWFYWSINLGAILSLGGIAYIQQNVSFLTGYLIPTVCVAIAFLVFLCG 244          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: S15A3_RAT (Solute carrier family 15 member 3 OS=Rattus norvegicus GN=Slc15a3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 54/209 (25.84%), Postives = 96/209 (45.93%), Query Frame = 2
Query:  125 ETFEKLGTTGTSSNLLVYLTTI-FNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDS----GACPGP-------TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFL 715
            E  E+    G +SNL++YL ++ FN     A+    +F G +     +G +L+D Y GR+  +   S+  +L    L LT          CG         ACP         +P+    L+  L L+ + A  +R    +FGADQ     + G+     FFNW+Y++     ++SL V+ +++ ++S+  G  I   ++ L+  +F +
Sbjct:   42 EMLERAAFFGVTSNLVLYLNSLNFNWDGEHASRATLLFLGASYLLAPVGGWLADVYLGRFLAISL-SLLLYLAATGLLLTTITDDGRRSFCGEMPELPLKPACPSANCQGSWSSPYCATTLYLVLLLLALAASSVRSNLTSFGADQV---MDLGRDATRRFFNWFYWSINLGAILSLLVVAFIEQNISFLQGYSIIVGLVGLAFFIFLI 246          
BLAST of FC930390 vs. ExPASy Swiss-Prot
Match: S15A4_MOUSE (Solute carrier family 15 member 4 OS=Mus musculus GN=Slc15a4 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 56/214 (26.17%), Postives = 96/214 (44.86%), Query Frame = 2
Query:  125 ETFEKLGTTGTSSNLLVYLTTI-FNMKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGN--------------QDSGACPGPTPWQLA-FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLG 718
            E  E+    G ++NL+++L    F+ +   A+  + +F G T   +  G +L+D   GR + +  +     LG+L   L AA  +     CG+                S +CP     + A   F GL L+ +G   ++     FGADQ     + G +    FFNW+Y++     ++SL  I Y+Q +VS+  G  IP   + ++  +F  G
Sbjct:   37 ELLERAAFYGVTANLVLFLNGAPFDWEGAQASQALLLFMGLTYLGSPFGGWLADARLGRARAILLSLALYLLGLLAFPLLAA-PRSRSFLCGDPRPELVRNCSAPFPNGSASCPENAARRCAPATFAGLVLVGLGVATVKANITPFGADQVK---DRGPEATRRFFNWFYWSINLGAILSLGGIAYIQQNVSFFTGYLIPTVCVAIAFLVFLCG 246          
The following BLAST results are available for this feature:
BLAST of FC930390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
S15A4_XENLA9.046e-1627.98Solute carrier family 15 member 4 OS=Xenopus laevi... [more]
S15A4_HUMAN1.181e-1528.85Solute carrier family 15 member 4 OS=Homo sapiens ... [more]
PEPT3_CAEEL2.015e-1526.54Peptide transporter 3 OS=Caenorhabditis elegans GN... [more]
S15A1_CANFA2.632e-1526.05Solute carrier family 15 member 1 OS=Canis familia... [more]
PEPT1_CAEEL2.910e-1428.05Peptide transporter family 1 OS=Caenorhabditis ele... [more]
S15A4_RAT3.800e-1427.23Solute carrier family 15 member 4 OS=Rattus norveg... [more]
S15A3_RAT6.483e-1425.84Solute carrier family 15 member 3 OS=Rattus norveg... [more]
S15A4_MOUSE7.167e-1326.17Solute carrier family 15 member 4 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC34007A09EF PostHarvC1 Citrus clementina cDNA clone C34007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930390 ID=FC930390; Name=FC930390; organism=Citrus clementina; type=EST; length=720bp
GAACTTTGAGCACTCTTTTCCAGACACCATGGAGAAGAACAGTAAGACAG
CAGTTGTTGCGACAGATGATGAGCCTCAGCTCAACTACAGGGGATGGAAA
TCAATGCCTTTTGTTATAGGAAATGAAACTTTTGAAAAGCTGGGGACTAC
TGGCACTTCCTCCAACCTCTTGGTATATTTGACAACCATATTCAACATGA
AAAGTATCACGGCAACAACTCTCATTAACATCTTCAGTGGTACCACAAAT
TTTGCCACCTTGCTCGGAGCATTCCTGTCCGATACTTACTTTGGCCGGTA
CAAGACTCTGGGATTCGCTTCTGTTGCCTCTTTTCTGGGGATGCTTGTAC
TTTCTTTGACAGCAGCAATCTCAAAACTGCACCCACCTGATTGTGGAAAT
CAAGATTCTGGAGCGTGCCCTGGGCCAACACCATGGCAACTGGCTTTTCT
GTTCACTGGGCTAGGACTGATGGTAATTGGAGCTGGCGGCATTAGGCCAT
GTAACTTGGCCTTTGGTGCTGACCAATTTAATCCCAATACTGAATCTGGG
AAGCAGGGAATCACCAGCTTCTTCAATTGGTACTACTTCACCTTCACCTT
CGCGATGATGATATCTTTGACAGTCATTGTTTACGTGCAATCGGATGTGA
GCTGGGCCTGGGGATTGGGAATCCCTGCATTTATGATGTTCTTATCCTGT
GCAATGTTCTTCCTGGGATC
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