FC930394

Overview
NameFC930394
Unique NameFC930394
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930394_ssr126 microsatellite FC930394_ssr126:126..137. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13179 contig Ccv1_Contig13179:40..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 43/109 (39.45%), Postives = 57/109 (52.29%), Query Frame = 3
Query:  195 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICG 521
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA  YM AQ LGA+ G
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAG 100          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 53/160 (33.12%), Postives = 71/160 (44.38%), Query Frame = 3
Query:  195 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAETIGTFVLVYTVFSATD 674
            EL   +F RAV+AEF+A            + +  Q  P+          +L IA AFG  I  LV     +SG HINPAVT    +G  VS +RA+ Y+ AQ LGA+ G   +         R     N L +    G  +  E   T  LV  +F +TD
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALNWP-QALPS----------VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAI-RGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFPSTD 150          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 37/109 (33.94%), Postives = 56/109 (51.38%), Query Frame = 3
Query:  351 IAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAETIGTFVLVYTVFSATDP 677
            IA+ FG  +  L      ISG HINPAVT G  +  ++S+I+++LY+  QC+GAI G   +K       +    G +  +     G  +  E + TF+LV  V   +DP
Sbjct:   57 IAFTFGLTVATLAQAIGHISGCHINPAVTVGFLIVGEMSIIKSVLYIAVQCVGAIAGAAVIKVGVSEAVSGLDLGVSSFSSTLTVGQAVLIEALITFILVVVVKGVSDP 165          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQPZ2_RHIME (Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 39/119 (32.77%), Postives = 61/119 (51.26%), Query Frame = 3
Query:  333 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCG--FVKAFQKSYYNRYGGGANELAD----GYNKGTGLGAETIGTFVLVYTVFSAT 671
            G+G+LG+++AFG  +  + Y   GISGGH NPAV+ GL +  +V     + Y++AQ  GAI      +V A  K+ +      AN   +    GY+    L  E + TF  +  +  +T
Sbjct:   33 GIGLLGVSFAFGLTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVIATGKADFQLGSFAANGYGEHSPGGYSLTAALVTEVVMTFFFLIIILGST 151          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 52/160 (32.50%), Postives = 69/160 (43.12%), Query Frame = 3
Query:  195 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAETIGTFVLVYTVFSATD 674
            EL   +F RAV+AEF+A            + + S               +L IA AFG  I  LV     +SG HINPAVT    +G  VS +RA  Y+ AQ LGA+ G   +         R     N L +    G  +  E   T  LV  +F++TD
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPP-----------SVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEI-RGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTD 150          
The following BLAST results are available for this feature:
BLAST of FC930394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
MIP_CAVPO3.539e-1139.45Lens fiber major intrinsic protein OS=Cavia porcel... [more]
AQP2_SHEEP3.539e-1133.13Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
AQP_HAEIX4.622e-1133.94Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
AQPZ2_RHIME6.036e-1132.77Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 ... [more]
AQP2_MOUSE7.883e-1132.50Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34007B01EF PostHarvC1 Citrus clementina cDNA clone C34007B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930394 ID=FC930394; Name=FC930394; organism=Citrus clementina; type=EST; length=677bp
GACCCATCATTAAACTCTGTAGCAACACAACAGTCGTAGCTCTTGTTTCT
CCCTCTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAAAATGGGGAA
GGATGTTGAAGTTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCA
AGGACTACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTG
GGCAAGTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTACGCT
TTTGTTTCTTTATGTTACCGTCTTGACTGTGATTGGATACAAGAGCCAGA
CTGATCCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTTGGC
ATCGCTTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCACAGC
CGGTATTTCTGGTGGACATATCAACCCGGCTGTGACATTCGGACTGTTCT
TGGGGCGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCACAG
TGCTTGGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATC
ATACTACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGATACA
ACAAGGGCACCGGACTGGGTGCTGAGACCATCGGTACTTTCGTTCTTGTC
TACACTGTTTTCTCTGCCACTGATCCT
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