FC930394
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16 Identity = 57/166 (34.34%), Postives = 86/166 (51.81%), Query Frame = 3 Query: 180 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAETIGTFVLVYTVFSATD 674 ++ F+ + +F++AV AEF+A I + +P V ++ I+ FG I +V C ISGGHINPAVT + RK+S+ +++ Y+ AQCLGAI G G + + + N GG G + G GL E I TF LV+T+F++ D Sbjct: 26 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPNVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCD 182
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 2.797e-16 Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 3 Query: 180 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAETIGTFVLVYTVFSATD 674 ++ F+ + +F++AV AEF+A I + +P V ++ I+ FG I +V C ISGGHINPAVT + RK+S+ +++ Y++AQCLGAI G G + + + + GG G + G GL E I TF LV+T+F++ D Sbjct: 23 MVAFKGVWTQAFWKAVSAEFLATLIFVLLGVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCD 179
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16 Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 3 Query: 180 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAETIGTFVLVYTVFSATD 674 ++ F+ + +F++AV AEF+A I + + +P V ++ I+ FG I +V C ISGGHINPAVT + RK+S+ +++ Y+ AQCLGAI G G + + + + GG G + G GL E I TF LV+T+F++ D Sbjct: 23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGKENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCD 179
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16 Identity = 56/166 (33.73%), Postives = 86/166 (51.81%), Query Frame = 3 Query: 180 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAETIGTFVLVYTVFSATD 674 ++ F+ + +F++AV AEF+A I + +P V ++ I+ FG I +V C ISGGHINPAVT + RK+S+ +++ Y+ AQCLGAI G G + + + + GG G + G GL E I TF LV+T+F++ D Sbjct: 23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCD 179
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.232e-16 Identity = 56/157 (35.67%), Postives = 80/157 (50.96%), Query Frame = 3 Query: 219 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG---GANELADGYNKGTGLGAETIGTFVLVYTVF-SATDP 677 +A +AEFI+ + + TD T G++ + A +F+ V A ISGGH+NPAVTFG F+G +SL++AL+Y VAQ LG++ C +K GG GA L+ G + E + TF LVYTV+ +A DP Sbjct: 21 KAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATP----AGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKI-------ATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDP 166
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16 Identity = 53/154 (34.42%), Postives = 79/154 (51.30%), Query Frame = 3 Query: 219 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAETIGTFVLVYTVF-SATDP 677 +A +AEFI+ I Y T+ T G++ + A +F+ V A ISGGH+NPAVTFG F+G ++L+R ++Y++AQ LG+I + S +G L++G G L E + TF LVYTV+ +A DP Sbjct: 21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATP----AGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDP 165
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15 Identity = 55/157 (35.03%), Postives = 80/157 (50.96%), Query Frame = 3 Query: 219 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG---GANELADGYNKGTGLGAETIGTFVLVYTVF-SATDP 677 +A +AEFI+ + + TD T G++ + A +F+ V A ISGGH+NPAVTFG F+G +SL++A++Y VAQ LG++ C +K GG GA L+ G + E + TF LVYTV+ +A DP Sbjct: 21 KAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPS----GLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKI-------ATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDP 166
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15 Identity = 56/166 (33.73%), Postives = 85/166 (51.20%), Query Frame = 3 Query: 180 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAETIGTFVLVYTVFSATD 674 ++ F+ + +F++AV AEF+A I + P V ++ I+ FG I +V C ISGGHINPAVT + RK+S+ +++ Y+ AQCLGAI G G + + + + GG G + G GL E I TF LV+T+F++ D Sbjct: 23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCD 179
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3) HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15 Identity = 55/166 (33.13%), Postives = 86/166 (51.81%), Query Frame = 3 Query: 180 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAETIGTFVLVYTVFSATD 674 ++ F+ + +F++AV AEF+A I + P V ++ I+ FG I +V C ISGGHINPAVT + R++S+ +++ Y+ AQCLGAI G G + + + + GG G + + G GL E I TF LV+T+F++ D Sbjct: 23 MVAFKGVWTQTFWKAVTAEFLAMLIFVLLSLGSTINWGGAEKPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLSAGHGLLVELIITFQLVFTIFASCD 179
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15 Identity = 58/158 (36.71%), Postives = 82/158 (51.90%), Query Frame = 3 Query: 219 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTG-LGA---ETIGTFVLVYTVF-SATDP 677 +A +AEFI+ + + T+ T G+ +A AFG +F+ V A ISGGH+NPAVTFG F+G ++L+R +LY +AQ LG++ C +K GG A G + G G L A E + TF LVYTV+ +A DP Sbjct: 21 KAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPS--GLVAAAVAHAFG--LFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFAT--------GGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDP 166 The following BLAST results are available for this feature:
BLAST of FC930394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 105
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930394 ID=FC930394; Name=FC930394; organism=Citrus clementina; type=EST; length=677bpback to top |