FC930394

Overview
NameFC930394
Unique NameFC930394
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930394_ssr126 microsatellite FC930394_ssr126:126..137. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13179 contig Ccv1_Contig13179:40..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 57/166 (34.34%), Postives = 86/166 (51.81%), Query Frame = 3
Query:  180 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAETIGTFVLVYTVFSATD 674
            ++ F+ +   +F++AV AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +  +  +  N  GG G   +      G GL  E I TF LV+T+F++ D
Sbjct:   26 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPNVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCD 182          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.797e-16
Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 3
Query:  180 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAETIGTFVLVYTVFSATD 674
            ++ F+ +   +F++AV AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y++AQCLGAI G G +  +  +  +  GG G   +      G GL  E I TF LV+T+F++ D
Sbjct:   23 MVAFKGVWTQAFWKAVSAEFLATLIFVLLGVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCD 179          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 3
Query:  180 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAETIGTFVLVYTVFSATD 674
            ++ F+ +   +F++AV AEF+A            I +  + +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +  +  +  +  GG G   +      G GL  E I TF LV+T+F++ D
Sbjct:   23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGKENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCD 179          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16
Identity = 56/166 (33.73%), Postives = 86/166 (51.81%), Query Frame = 3
Query:  180 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAETIGTFVLVYTVFSATD 674
            ++ F+ +   +F++AV AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +  +  +  +  GG G   +      G GL  E I TF LV+T+F++ D
Sbjct:   23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCD 179          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.232e-16
Identity = 56/157 (35.67%), Postives = 80/157 (50.96%), Query Frame = 3
Query:  219 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG---GANELADGYNKGTGLGAETIGTFVLVYTVF-SATDP 677
            +A +AEFI+            + +   TD    T      G++  + A    +F+ V   A ISGGH+NPAVTFG F+G  +SL++AL+Y VAQ LG++  C  +K          GG   GA  L+ G      +  E + TF LVYTV+ +A DP
Sbjct:   21 KAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATP----AGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKI-------ATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDP 166          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 53/154 (34.42%), Postives = 79/154 (51.30%), Query Frame = 3
Query:  219 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAETIGTFVLVYTVF-SATDP 677
            +A +AEFI+            I Y   T+    T      G++  + A    +F+ V   A ISGGH+NPAVTFG F+G  ++L+R ++Y++AQ LG+I     +     S    +G     L++G   G  L  E + TF LVYTV+ +A DP
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATP----AGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDP 165          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 55/157 (35.03%), Postives = 80/157 (50.96%), Query Frame = 3
Query:  219 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG---GANELADGYNKGTGLGAETIGTFVLVYTVF-SATDP 677
            +A +AEFI+            + +   TD    T      G++  + A    +F+ V   A ISGGH+NPAVTFG F+G  +SL++A++Y VAQ LG++  C  +K          GG   GA  L+ G      +  E + TF LVYTV+ +A DP
Sbjct:   21 KAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPS----GLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKI-------ATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDP 166          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 56/166 (33.73%), Postives = 85/166 (51.20%), Query Frame = 3
Query:  180 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAETIGTFVLVYTVFSATD 674
            ++ F+ +   +F++AV AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +  +  +  +  GG G   +      G GL  E I TF LV+T+F++ D
Sbjct:   23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCD 179          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 55/166 (33.13%), Postives = 86/166 (51.81%), Query Frame = 3
Query:  180 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAETIGTFVLVYTVFSATD 674
            ++ F+ +   +F++AV AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   R++S+ +++ Y+ AQCLGAI G G +  +  +  +  GG G   +    + G GL  E I TF LV+T+F++ D
Sbjct:   23 MVAFKGVWTQTFWKAVTAEFLAMLIFVLLSLGSTINWGGAEKPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLSAGHGLLVELIITFQLVFTIFASCD 179          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 58/158 (36.71%), Postives = 82/158 (51.90%), Query Frame = 3
Query:  219 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTG-LGA---ETIGTFVLVYTVF-SATDP 677
            +A +AEFI+            + +   T+    T    G+    +A AFG  +F+ V   A ISGGH+NPAVTFG F+G  ++L+R +LY +AQ LG++  C  +K           GG    A G + G G L A   E + TF LVYTV+ +A DP
Sbjct:   21 KAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPS--GLVAAAVAHAFG--LFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFAT--------GGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDP 166          
The following BLAST results are available for this feature:
BLAST of FC930394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
AQP4_NOTAL1.256e-1634.34Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_MOUSE2.797e-1633.73Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP4_DIPME3.653e-1633.73Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_RAT4.772e-1633.73Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
TIP12_MAIZE6.232e-1635.67Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP1_MEDTR8.139e-1634.42Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP12_ORYSJ1.388e-1535.03Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
AQP4_HUMAN1.388e-1533.73Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_BOVIN1.813e-1533.13Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
TIP11_ARATH2.368e-1536.71Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34007B01EF PostHarvC1 Citrus clementina cDNA clone C34007B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930394 ID=FC930394; Name=FC930394; organism=Citrus clementina; type=EST; length=677bp
GACCCATCATTAAACTCTGTAGCAACACAACAGTCGTAGCTCTTGTTTCT
CCCTCTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAAAATGGGGAA
GGATGTTGAAGTTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCA
AGGACTACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTG
GGCAAGTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTACGCT
TTTGTTTCTTTATGTTACCGTCTTGACTGTGATTGGATACAAGAGCCAGA
CTGATCCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTTGGC
ATCGCTTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCACAGC
CGGTATTTCTGGTGGACATATCAACCCGGCTGTGACATTCGGACTGTTCT
TGGGGCGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCACAG
TGCTTGGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATC
ATACTACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGATACA
ACAAGGGCACCGGACTGGGTGCTGAGACCATCGGTACTTTCGTTCTTGTC
TACACTGTTTTCTCTGCCACTGATCCT
back to top