FC930394

Overview
NameFC930394
Unique NameFC930394
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930394_ssr126 microsatellite FC930394_ssr126:126..137. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13179 contig Ccv1_Contig13179:40..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.949e-14
Identity = 56/156 (35.90%), Postives = 76/156 (48.72%), Query Frame = 3
Query:  219 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK--AFQKSYYNRYGGGANELADGYNKGTGLGAETIGTFVLVYTVF-SATDP 677
            +A +AEFIA            I Y   T    N       G++ IA A    +F+ V   A ISGGH+NPAVTFGL +G  ++++  L Y +AQ LGA   C  +K     K+       G +EL        G+  E + TF LVYTV+ +A DP
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYGQLT----NGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHGVAGISEL-------EGVVMEIVITFALVYTVYATAADP 163          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 54/155 (34.84%), Postives = 76/155 (49.03%), Query Frame = 3
Query:  219 RAVIAEFIAXXXXXXXXXXXXIGYKSQT-DPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAETIGTFVLVYTVF-SATDP 677
            +A +AEFIA            I Y   T D  L+       G++ +A A    +F+ V   A ISGGH+NPAVT GL +G  ++++    Y +AQ LG+   C  +K       N      + +A G N   G+  E I TF LVYTV+ +A DP
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDP-----AGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVT----NGLAVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADP 164          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 52/154 (33.77%), Postives = 78/154 (50.65%), Query Frame = 3
Query:  219 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAETIGTFVLVYTVF-SATDP 677
            +A +AEFI+            I Y   T+    T      G++  + A    +F+ V   A ISGGH+NPAV FG F+G  ++L+R ++Y++AQ LG+I     +     S    +G     L++G   G  L  E + TF LVYTV+ +A DP
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATP----AGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDP 164          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 54/155 (34.84%), Postives = 76/155 (49.03%), Query Frame = 3
Query:  219 RAVIAEFIAXXXXXXXXXXXXIGYKSQT-DPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAETIGTFVLVYTVF-SATDP 677
            +A +AEFIA            I Y   T D  L+       G++ +A A    +F+ V   A ISGGH+NPAVT GL +G  ++++    Y +AQ LG+   C  +K       N      + +A G N   G+  E I TF LVYTV+ +A DP
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDP-----AGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVT----NGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADP 164          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 55/156 (35.26%), Postives = 75/156 (48.08%), Query Frame = 3
Query:  219 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANEL--ADGYNKGTGLGAETIGTFVLVYTVF-SATDP 677
            +A +AEFI+            + +   T     T      G++  A A    +F+ V   A ISGGH+NPAVTFG F+G  ++L R LLY +AQ LG+   C F+  F        GG A       G +    L  E + TF LVYTV+ +A DP
Sbjct:   21 KAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTP----AGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVAC-FLLRFST------GGLATGTFGLTGVSVWEALVLEIVMTFGLVYTVYATAVDP 165          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 53/157 (33.76%), Postives = 78/157 (49.68%), Query Frame = 3
Query:  219 RAVIAEFIAXXXXXXXXXXXXIGYKS---QTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAETIGTFVLVYTVFS-ATDP 677
            RA +AEF++            +        T  +  T+  GG+ ++ +A A    +F  V     +SGGH+NPAVTF   +G ++S+IRA+ Y VAQ +GAI  C  ++       N        +A G ++  GL  E I TF LVY V+S A DP
Sbjct:   24 RATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALA--LFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLAT----NGLRPVGFHVASGVSELHGLLMEIILTFALVYVVYSTAIDP 174          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 55/159 (34.59%), Postives = 76/159 (47.80%), Query Frame = 3
Query:  219 RAVIAEFIAXXXXXXXXXXXXIGYKSQT-----DPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAETIGTFVLVYTVF-SATDP 677
            +A +AEFI+            I Y   T     DP          G++ +A   G  +F+ V   A ISGGH+NPAVTFGL LG +++++  + Y +AQ LGAI G   V+         +G        G     G+  E I TF LVYTV+ +A DP
Sbjct:   20 KAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDP---------AGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCTGVATPTHG------LSGVGAFEGVVMEIIVTFGLVYTVYATAADP 163          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 56/156 (35.90%), Postives = 74/156 (47.44%), Query Frame = 3
Query:  219 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANEL--ADGYNKGTGLGAETIGTFVLVYTVF-SATDP 677
            +A  AEFI+            + +   T     T      G++  A A    +F+ V   A ISGGH+NPAVTFG F+G  ++L R LLY VAQ LG+   C F+  F        GG A       G +    L  E + TF LVYTV+ +A DP
Sbjct:   21 KAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTP----AGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVAC-FLLRFST------GGQATGTFGLTGVSVWEALVLEIVMTFGLVYTVYATAVDP 165          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEPK (Aquaporin Z OS=Pseudomonas putida (strain KT2440) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 41/121 (33.88%), Postives = 63/121 (52.07%), Query Frame = 3
Query:  333 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV-------KAFQKSYYNRYGGGANELADGYNKGTGLGAETIGTFVLVYTVFSATD 674
            G+G+LG+A+AFG  +  + +    ISG H+NPAV+FGL +G +      L Y++AQ +GAI   G +         F+ S      G A+    GY  G G  +E + T + +  +  ATD
Sbjct:   34 GIGVLGVAFAFGLTVLTMAFAIGHISGCHLNPAVSFGLVVGGRFPAKELLPYVIAQVIGAILAAGVIYLIASGKAGFELSAGLASNGYADHSPGGYTLGAGFVSEVVMTAMFLVVIMGATD 154          
BLAST of FC930394 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 47/116 (40.52%), Postives = 63/116 (54.31%), Query Frame = 3
Query:  318 TDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAETIGTFVLVYTVFS 665
            T+  GG+ ++ +A AF   +F  V     +SGGH+NPAVTFG  +G +V+ IRA+ Y +AQ LGAI  C  ++       N        LA G     GL  E I TF LVY V+S
Sbjct:   60 TNTPGGLILVALAHAFA--LFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTT----NGMRPVGFRLASGVGAVNGLVLEIILTFGLVYVVYS 169          
The following BLAST results are available for this feature:
BLAST of FC930394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
TIP21_ORYSJ9.949e-1435.90Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP2_TOBAC1.697e-1334.84Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_MEDSA1.697e-1333.77Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP1_TOBAC2.216e-1334.84Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP11_ORYSJ2.216e-1335.26Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP32_ARATH2.895e-1333.76Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP22_ORYSJ2.895e-1334.59Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP11_MAIZE2.895e-1335.90Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
AQPZ_PSEPK2.895e-1333.88Aquaporin Z OS=Pseudomonas putida (strain KT2440) ... [more]
TIP31_ARATH3.781e-1340.52Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]

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Properties
Property NameValue
Genbank descriptionC34007B01EF PostHarvC1 Citrus clementina cDNA clone C34007B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930394 ID=FC930394; Name=FC930394; organism=Citrus clementina; type=EST; length=677bp
GACCCATCATTAAACTCTGTAGCAACACAACAGTCGTAGCTCTTGTTTCT
CCCTCTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAAAATGGGGAA
GGATGTTGAAGTTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCA
AGGACTACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTG
GGCAAGTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTACGCT
TTTGTTTCTTTATGTTACCGTCTTGACTGTGATTGGATACAAGAGCCAGA
CTGATCCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTTGGC
ATCGCTTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCACAGC
CGGTATTTCTGGTGGACATATCAACCCGGCTGTGACATTCGGACTGTTCT
TGGGGCGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCACAG
TGCTTGGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATC
ATACTACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGATACA
ACAAGGGCACCGGACTGGGTGCTGAGACCATCGGTACTTTCGTTCTTGTC
TACACTGTTTTCTCTGCCACTGATCCT
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