FC930395

Overview
NameFC930395
Unique NameFC930395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP1_ARATH (Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.187e-44
Identity = 84/153 (54.90%), Postives = 117/153 (76.47%), Query Frame = 1
Query:  214 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHN 669
            L PELL ++I+R+E +E  WP R++VVACA VC+ WR++ K+IV+SP LSGKITFP  LKQPGPR+   QC I+R+K   T++LYL L+P+   E GKFLL+A+R RR  ++EY+IS+ A  +S+ SN Y+GK+ S+FLGT F IYD++P +N
Sbjct:   60 LPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSLKQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMHADTISRSSNTYIGKIRSNFLGTKFIIYDTQPAYN 212          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP5_ORYSJ (Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.511e-44
Identity = 88/165 (53.33%), Postives = 118/165 (71.52%), Query Frame = 1
Query:  214 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSF-SEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGCKPLSSRGSRR 705
            L PELL ++I+RVE +E +WP R+ VVACA VC+ WRE+TK++VK+    G+ITFP  LKQPGPRE P QC +RR++ TST+ LYL L+PS   E  K LLAAR+ RR   + ++ISL + D S  S+ YVGKL  +FLGT FTI+DS+PP +     ++R S+R
Sbjct:   71 LPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEECGRITFPISLKQPGPREHPVQCFVRRDRATSTYLLYLGLSPSLHGENDKLLLAARKIRRATRTSFVISLVSNDFSLSSSTYVGKLKPNFLGTKFTIFDSQPPCDAVVLPNNRPSKR 235          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP7_ORYSJ (Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.819e-43
Identity = 85/166 (51.20%), Postives = 121/166 (72.89%), Query Frame = 1
Query:  214 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGCKPLS-SRGSRR 705
            L PELL ++++R+E  + +WP R++VVACA VC  WR++ KDIV++P   GK+TFP  LKQPGPR+   QC I+R+K   T++LYL L+ +   E GKFLL+A+R RR  H++YIIS+D+ ++S+ S+ Y+GKL S+FLGT F IYD++PP+N     S  R SRR
Sbjct:   59 LPPELLRDVMKRLEEDDSNWPSRKDVVACASVCTTWRDMCKDIVRNPEFCGKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYHLYLCLSSAVLDETGKFLLSAKRSRRTTHTDYIISMDSKNISRSSSGYIGKLRSNFLGTKFIIYDTQPPYNARTLCSQERTSRR 224          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP10_ARATH (Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.988e-43
Identity = 82/153 (53.59%), Postives = 116/153 (75.82%), Query Frame = 1
Query:  214 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHN 669
            L PELL ++I+R+E +E +WP R++VVACA VC+ WR + ++IV  P + GK+TFP  LKQPGPR+   QC I+R+K   TF+L+L L+P+   E GKFLL+A+R RR   +EYIIS+DA ++S+ SN+Y+GKL S+FLGT F +YD++PP N
Sbjct:   62 LPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLTFPVSLKQPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRRTTRTEYIISMDADNISRSSNSYLGKLRSNFLGTKFLVYDTQPPPN 214          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP6_ARATH (Tubby-like F-box protein 6 OS=Arabidopsis thaliana GN=TULP6 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.514e-43
Identity = 81/151 (53.64%), Postives = 113/151 (74.83%), Query Frame = 1
Query:  214 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPP 663
            L PELL +II+R+E+ +  WP R++VVACA VCK WRE+TK++VK P LSG ITFP  L+QPGPR+ P QC I+R + T  + LYL L+P+ S +K K LL+A+R RR   +E+++SL   D S+ S+ Y+GKL S+FLGT FT+Y+++PP
Sbjct:   72 LPPELLLDIIQRIESEQSLWPGRRDVVACASVCKSWREMTKEVVKVPELSGLITFPISLRQPGPRDAPIQCFIKRERATGIYRLYLGLSPALSGDKSKLLLSAKRVRRATGAEFVVSLSGNDFSRSSSNYIGKLRSNFLGTKFTVYENQPP 222          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP5_ARATH (Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.514e-43
Identity = 81/155 (52.26%), Postives = 117/155 (75.48%), Query Frame = 1
Query:  226 LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGCKPLS 687
            LL +++++++ +E +WP R+ VVACA VCK WR + KDIVKSP  SGK+TFP  LKQPGPR+   QC I+R+K   T++LYL+L+P+   E GKFLL+A+R RR  ++EY+IS+DA ++S+ S+ Y+GKL S+FLGT F +YD+ P +N  + LS
Sbjct:   62 LLRDVMKKLDESESTWPARKQVVACAGVCKTWRLMCKDIVKSPEFSGKLTFPVSLKQPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATYTEYVISMDADNISRSSSTYIGKLKSNFLGTKFIVYDTAPAYNSSQILS 216          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP13_ORYSJ (Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.222e-42
Identity = 87/166 (52.41%), Postives = 118/166 (71.08%), Query Frame = 1
Query:  214 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLAL-TPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGCK-PLSSRGSRR 705
            L PELL +II R+E +E +WP R++VVACA VC+ WRE+ K+IVK+P L GKITFP  L+QPGPR+   QC IRR+K T T+YLYL+L +    + GKFLL+A+R      +EY+IS++A +LS+ +N  +GKL S+FLGT F IYD+  P+N      S + SRR
Sbjct:   56 LPPELLRDIIERLEESEATWPSRKHVVACAGVCRTWREMCKEIVKNPELCGKITFPISLRQPGPRDGTMQCFIRRDKSTQTYYLYLSLGSAVLVDNGKFLLSAKRNWHATCTEYVISMNANNLSRSTNTNIGKLRSNFLGTKFVIYDTHTPYNATSDSQSGKTSRR 221          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP14_ORYSJ (Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.515e-42
Identity = 100/234 (42.74%), Postives = 133/234 (56.84%), Query Frame = 1
Query:   19 RSGWAKMSLRN---SCLSRRISRSFGEAHKSSKETELNAADDSVVSSTTSAPMDXXXXXXXXXXXXXXLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGCK-PLSSRGSRR 705
            R G+  +S R      +  R  RS    H+        AA D V SS  +                  L PELL ++I R+E +E +WP R+NVVACA VC+ WR++ ++IVK+P   GKITFP  LKQPGPR    QC I+R+K T T+ LYL L+ +   E GKFLL+A+RY R   +EY I + A + S+ SN Y+GKL S+ LGT F IYD++PP N      S + SRR
Sbjct:   11 RDGFGSLSRRGFEVRLVGHRRGRSHSAVHELRDGHAAAAAADVVQSSCWA-----------------NLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRR 227          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP3_ORYSJ (Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.407e-42
Identity = 96/231 (41.56%), Postives = 136/231 (58.87%), Query Frame = 1
Query:   19 RSGWAKMSLRNSCLSRRISRSFGEAHKSSKETELNAADDSVVSSTTSAPMDXXXXXXXXXXXXXXLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSF-SEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGC-KPLSSRGSRR 705
            R G+  +S R+  ++          HK   ++ L+  DDS      S                  L PELL E+IRR+E  E +WP R+NVV  A VC+ WRE+ K+ V SP   GK+TFP  +KQPGPR+   QC I+RN+  ST++LYL L+    +E GKF+LAA+R+R+   +EY IS+ +G++S+ S   +GKL S+FLGT F IYD++PP+NG   P   R S+R
Sbjct:   11 RDGFGSLSRRSFEVTLASLYGLTGHHKGKTQSSLDELDDSPAIIPESR--------------WASLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSIKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMVSGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKR 227          
BLAST of FC930395 vs. ExPASy Swiss-Prot
Match: TLP2_ARATH (Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.096e-41
Identity = 85/148 (57.43%), Postives = 106/148 (71.62%), Query Frame = 1
Query:  214 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSR 657
            L PELL +II RVE +E +WP R  VV+CA VCK WR IT +IV+ P   GK+TFP  LKQPGPR+ P QC I+RN+ T+T+ LY  L PS +E  K LLAARR RR   +++IISL A + S+ S+ YVGKL S FLGT FTIYD++
Sbjct:   51 LPPELLHDIIWRVEESETAWPARAAVVSCASVCKSWRGITMEIVRIPEQCGKLTFPISLKQPGPRDSPIQCFIKRNRATATYILYYGLMPSETENDKLLLAARRIRRATCTDFIISLSAKNFSRSSSTYVGKLRSGFLGTKFTIYDNQ 198          
The following BLAST results are available for this feature:
BLAST of FC930395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
TLP1_ARATH1.187e-4454.90Tubby-like F-box protein 1 OS=Arabidopsis thaliana... [more]
TLP5_ORYSJ4.511e-4453.33Tubby-like F-box protein 5 OS=Oryza sativa subsp. ... [more]
TLP7_ORYSJ3.819e-4351.20Tubby-like F-box protein 7 OS=Oryza sativa subsp. ... [more]
TLP10_ARATH4.988e-4353.59Tubby-like F-box protein 10 OS=Arabidopsis thalian... [more]
TLP6_ARATH6.514e-4353.64Tubby-like F-box protein 6 OS=Arabidopsis thaliana... [more]
TLP5_ARATH6.514e-4352.26Tubby-like F-box protein 5 OS=Arabidopsis thaliana... [more]
TLP13_ORYSJ4.222e-4252.41Tubby-like F-box protein 13 OS=Oryza sativa subsp.... [more]
TLP14_ORYSJ5.515e-4242.74Tubby-like F-box protein 14 OS=Oryza sativa subsp.... [more]
TLP3_ORYSJ9.407e-4241.56Tubby-like F-box protein 3 OS=Oryza sativa subsp. ... [more]
TLP2_ARATH2.096e-4157.43Tubby-like F-box protein 2 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34007B02EF PostHarvC1 Citrus clementina cDNA clone C34007B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930395 ID=FC930395; Name=FC930395; organism=Citrus clementina; type=EST; length=707bp
GAAAGCAAAATCAAAAGAAGAAGCGGGTGGGCGAAAATGTCTCTGAGAAA
TTCGTGTCTCTCTCGAAGGATCTCGAGATCGTTCGGAGAGGCACACAAAT
CTTCGAAAGAGACCGAACTCAATGCCGCTGACGACTCGGTCGTGTCGTCG
ACCACGTCGGCGCCGATGGATTCCGGCGCCGCCGCTGCCCACTCCTCCGG
GTCATGGGCCGGGTTGCTGCCCGAATTGCTAGGGGAGATCATAAGGCGCG
TGGAGACCACAGAAGATAGCTGGCCCCATCGCCAAAACGTTGTCGCTTGT
GCTTGCGTTTGTAAGAGATGGAGGGAAATTACCAAAGATATCGTCAAGTC
TCCTTTTCTTAGTGGCAAAATTACCTTCCCTTCTTGCCTTAAACAGCCGG
GTCCACGCGAGTTCCCTCATCAATGTCTAATAAGGCGGAATAAGAAGACC
TCAACGTTCTACCTCTATCTTGCACTTACCCCATCATTTAGCGAAAAGGG
GAAGTTTCTTTTAGCAGCTCGGAGATATAGACGTGGTGCACACAGTGAGT
ATATCATATCTCTTGATGCTGGTGATCTTTCTCAAGGGAGTAATGCATAT
GTTGGCAAATTAAGTTCTGATTTCCTTGGGACAAACTTTACAATTTACGA
CAGCCGGCCGCCTCACAATGGGTGCAAACCCCTCAGCAGCAGGGGTAGTC
GACGATT
back to top