FC930400

Overview
NameFC930400
Unique NameFC930400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930400 vs. ExPASy Swiss-Prot
Match: TYRB_SALTY (Aromatic-amino-acid aminotransferase OS=Salmonella typhimurium GN=tyrB PE=3 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 6.237e-52
Identity = 101/242 (41.74%), Postives = 149/242 (61.57%), Query Frame = 1
Query:   10 KLNLGVGAYRTEE-LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMKCVXSSSDL 732
            K+NL +G Y  E+ + P +  V +    L  +      YLP+EGL  +    A LLFGAD+ VL++QRVAT+Q L G+G+L++ A  ++RYFP A V +S PTW NH  IF  A    S Y +YD  T G+ F  ++A +   P  S +LLH C HNPTG D TP QW+ + ++++ ++ IPF D+AYQGF +G +D+DA  +R  A+ G+  LV+ S+SK   LY ER+G +  V   +++
Sbjct:   28 KVNLSIGLYYNEDGIIPQLKTVAEAEARLNAQPHGASLYLPMEGLNTYRHTIAPLLFGADHPVLQQQRVATIQTLGGSGALKVGADFLKRYFPDAGVWVSDPTWENHIAIFAGAGFEVSTYPWYDDATNGIRFNDLLATLNTLPARSIVLLHPCCHNPTGADLTPSQWDAVIEIVKARDLIPFLDIAYQGFGAG-MDDDAYVIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVVCEDAEI 268          
BLAST of FC930400 vs. ExPASy Swiss-Prot
Match: TYRB_KLEPN (Tyrosine aminotransferase OS=Klebsiella pneumoniae GN=tyrB PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.536e-50
Identity = 96/241 (39.83%), Postives = 149/241 (61.83%), Query Frame = 1
Query:   10 KLNLGVGAYRTEE-LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMKCVXSSSD 729
            K+NL +G Y  ++ + P +  V +    L  E      YLP+EG + + +  A LLFGA+++ LK+ R+A++Q + G+G+L++ A  ++RYFP + V +S PTW NH  IF  A    S Y ++D  T G+ FE ++A ++  P    +LLH C HNPTG D TP QW+++ +V++ +  IPF D+AYQGF  G L+ DA ++R  A+ GM +LV+ S+SK   LY ER+G +  V   S+
Sbjct:   28 KVNLSIGLYYNDDGIIPQLQAVAEAEARLNAEPHGASLYLPMEGFSGYRQAIAPLLFGAEHTALKQNRIASIQTVGGSGALKVGADFLKRYFPESHVWVSDPTWENHIAIFEGAGFEVSTYPWFDKATNGVRFENLLAMLQTLPARDIVLLHPCCHNPTGADLTPAQWDRVVEVLKARQLIPFLDIAYQGF-GGGLEEDAYAIRAIASAGMPMLVSNSFSKIFSLYGERVGGLSVVCEDSE 267          
BLAST of FC930400 vs. ExPASy Swiss-Prot
Match: TYRB_ECOLI (Aromatic-amino-acid aminotransferase OS=Escherichia coli (strain K12) GN=tyrB PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.536e-50
Identity = 99/241 (41.08%), Postives = 148/241 (61.41%), Query Frame = 1
Query:   10 KLNLGVGAYRTEE-LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMKCVXSSSD 729
            K+NL +G Y  E+ + P +  V +    L  +      YLP+EGL  +    A LLFGAD+ VLK+QRVAT+Q L G+G+L++ A  ++RYFP + V +S PTW NH  IF  A    S Y +YD  T G+ F  ++A +K  P  S +LLH C HNPTG D T +QW+ + ++++ +  IPF D+AYQGF +G ++ DA ++R  A+ G+  LV+ S+SK   LY ER+G +  +   ++
Sbjct:   28 KVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAE 267          
BLAST of FC930400 vs. ExPASy Swiss-Prot
Match: TYRB_PARDE (Aromatic-amino-acid aminotransferase OS=Paracoccus denitrificans GN=tyrB PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.137e-48
Identity = 100/232 (43.10%), Postives = 136/232 (58.62%), Query Frame = 1
Query:   10 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM 705
            K++LGVG Y+       ++  V  AE  MLE    K Y  + G   F K   EL+ G     LK +  AT+  + GTG+LR A  L     P  +V +S PTW NH +I N   +P   YRY+D +T G+DFEGM AD+ AA  G  +LLHGC HNPTG + T +QW +IA ++++   +P  D+AYQGF  G L+ DA+  RL A+R  E+L+A S SKN G+Y ER G +
Sbjct:   28 KIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDG---LKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDG-LEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCL 255          
BLAST of FC930400 vs. ExPASy Swiss-Prot
Match: PHHC_PSEAE (Aromatic-amino-acid aminotransferase OS=Pseudomonas aeruginosa GN=phhC PE=3 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.912e-43
Identity = 97/232 (41.81%), Postives = 131/232 (56.47%), Query Frame = 1
Query:   10 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM 705
            KL+LGVG Y+  +    +L  VK AE  ++E+   K Y+   G A F    AEL  GA + +L EQR    Q   GTG+LRLA   I    PG  + +S PTW  H+ +F  A +  S Y Y       LD E M+A ++  P G  +LLH C HNPTG D + + W ++ DV++ +  +P  D AYQGF  G L+ DA +VRLFA    E+LV  S SKN GLY +R+GA+
Sbjct:   30 KLDLGVGVYKDAQGLTPILRSVKLAEQRLVEQETTKSYVGGHGDALFAARLAELALGAASPLLLEQRADATQTPGGTGALRLAGDFIAHCLPGRGIWLSDPTWPIHETLFAAAGLKVSHYPYVSADN-RLDVEAMLAGLERIPQGDVVLLHACCHNPTGFDLSHDDWRRVLDVVRRRELLPLIDFAYQGFGDG-LEEDAWAVRLFAGELPEVLVTSSCSKNFGLYRDRVGAL 259          
BLAST of FC930400 vs. ExPASy Swiss-Prot
Match: AATM_YEAST (Aspartate aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=AAT1 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.633e-34
Identity = 94/258 (36.43%), Postives = 132/258 (51.16%), Query Frame = 1
Query:   10 KLNLGVGAYRTEELQPYVLDVVKKAENLM---LERGENKEYLPIEGLAAFNKVTAELLFGADNS-----VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS---------FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL------FATRGMELLVAQSYSKNLGLYAERIGAMKCV 714
            K++L VG Y+    +      V KA+ L+   LE  +N  YLPI G   F +   + LF           L   R++ VQ LSGTG+L +AA  +   F    + I  P+W NHKNIF +     + YRY   K   +D +G I  +K     +          I+LH C HNPTG+DPT EQWEKI D I E   +P  D+AYQG  SG+L  DA  +RL      +      + + QS++KN+GLY ER+G++  +
Sbjct:   46 KIDLTVGIYKDGWGKVTTFPSVAKAQKLIESHLELNKNLSYLPITGSKEFQENVMKFLFKESCPQFGPFYLAHDRISFVQTLSGTGALAVAAKFLA-LFISRDIWIPDPSWANHKNIFQNNGFE-NIYRYSYYKDGQIDIDGWIEQLKTFAYNNQQENNKNPPCIILHACCHNPTGLDPTKEQWEKIIDTIYELKMVPIVDMAYQGLESGNLLKDAYLLRLCLNVNKYPNWSNGIFLCQSFAKNMGLYGERVGSLSVI 301          
BLAST of FC930400 vs. ExPASy Swiss-Prot
Match: ATTY_RHIME (Tyrosine aminotransferase OS=Rhizobium meliloti GN=tatA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.000e-33
Identity = 90/239 (37.66%), Postives = 131/239 (54.81%), Query Frame = 1
Query:   10 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMKCVXSSS 726
            K++LGVG YR E  +  +   VK AE  +LE  ++K Y+  EG   F     EL+ G     ++   VA VQ   G+G+LRLAA LI R   G  + +  P+W NH  IF  A +  + Y ++D  +  + F+ +++ ++ A  G  +LLH   HNPTG   +  QW +IA ++ E+  +P  D+AYQGF  G LD D + +R       E LVA S SK+ GLY ER GA+    SS+
Sbjct:   28 KVDLGVGVYRDETGRTPIFRAVKAAEKRLLETQDSKAYIGPEGDLVFLDRLWELVGG---DTIERSHVAGVQTPGGSGALRLAADLIAR-MGGRGIWLGLPSWPNHAPIFKAAGLDIATYDFFDIPSQSVIFDNLVSALEGAASGDAVLLHASCHNPTGGVLSEAQWMEIAALVAERGLLPLVDLAYQGFGRG-LDQDVAGLRHLLGVVPEALVAVSCSKSFGLYRERAGAIFARTSST 261          
BLAST of FC930400 vs. ExPASy Swiss-Prot
Match: AATC2_BOVIN (Putative aspartate aminotransferase, cytoplasmic 2 OS=Bos taurus GN=GOT1L1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.003e-25
Identity = 70/243 (28.81%), Postives = 123/243 (50.62%), Query Frame = 1
Query:   10 KLNLGVGAYRTEELQPYVLDVVKKAE-NLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL-ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMKCVXSSSDL 732
            K+ L      T + +P+V  VV+K    +  +   N EY P+ G+ +F + +  LLFG ++ V+ E R   VQ +  +G+ +L A  ++ +   ++++ I S     H  IF D      E+ ++D   + LD   ++  +K AP G   ++    +       TP QW ++  +++ K   PFFD+ YQG ++G L+ DA  +  F ++G E   +QS SKN G+Y E +G +  V   + L
Sbjct:   32 KMFLAYKVCMTSKGRPWVSSVVRKTRMQIAQDPSLNYEYTPVMGMKSFVQASLNLLFGKNSQVIVENRAGGVQTVGDSGAFQLGAQFLKSWCQSSQIVYIVSSQKEPHGLIFQDMGFTVYEHTFWDSAHLCLDPNMLLDVVKHAPHGCVFVIGSMGN----CQLTPSQWTQLMTLMKSKEIFPFFDIPYQGLSTGDLEEDARFLHYFVSQGFEFFCSQSLSKNFGIYDEGVGTLVVVTLDNQL 270          
BLAST of FC930400 vs. ExPASy Swiss-Prot
Match: AATC2_HUMAN (Putative aspartate aminotransferase, cytoplasmic 2 OS=Homo sapiens GN=GOT1L1 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.084e-23
Identity = 70/233 (30.04%), Postives = 114/233 (48.93%), Query Frame = 1
Query:   31 AYR---TEELQPYVLDVVKKAE-NLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL-ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMKCV 714
            AYR   T E  P+V  VV+K    +  +   N EYLP  GL +F + +  LLFG  +  + E RV  V  +  +G+ +L    +  +   A+++ I S     H  +F D      EY  +DPK + +D + ++  ++  P G  +++     N      TP  W K+  +I+ K   PFFD+  QG  +  L+ D   ++ F ++G E   +QS SKN G+Y E +G +  V
Sbjct:   36 AYRVCMTNEGHPWVSLVVQKTRLQISQDPSLNYEYLPTMGLKSFIQASLALLFGKHSQAIVENRVGGVHTVGDSGAFQLGVQFLRAWHKDARIVYIISSQKELHGLVFQDMGFTVYEYSVWDPKKLCMDPDILLNVVEQIPHGCVLVMG----NIIDCKLTPSGWAKLMSMIKSKQIFPFFDIPCQGLYTSDLEEDTRILQYFVSQGFEFFCSQSLSKNFGIYDEGVGMLVVV 264          
BLAST of FC930400 vs. ExPASy Swiss-Prot
Match: AATC2_MOUSE (Putative aspartate aminotransferase, cytoplasmic 2 OS=Mus musculus GN=Got1l1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.150e-22
Identity = 72/234 (30.77%), Postives = 115/234 (49.15%), Query Frame = 1
Query:   10 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL-ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM 705
            KL L      TEE  P+V  VV K    + E    + EYLP+ GL +F + + ELLFG  +  + E+RV  V  +  +G+ +L A  ++ +    K++ I S        IF D      EY  ++   +  D    +  ++  P GS +++     N T    T  QW K+  +I+ K   PFFD+  QG ++G L+ D   ++ F + G+E   +QS SKN G+Y E +G +
Sbjct:   32 KLFLAYKVCMTEEGHPWVSLVVHKTRLQIAEDPSLDYEYLPLVGLKSFIQSSLELLFGKHSEAIAEKRVGGVHIVGESGAFQLGAQFLKTWRKNVKIVCIVSCQKEQCGLIFQDMGFIVYEYSIWNASDLCSDPSMFVEVLQHIPVGSILVIG----NITDCKFTQNQWTKLMSIIKSKQIFPFFDIPCQGLSTGDLEEDTKILQYFVSLGLEFFCSQSLSKNFGIYDEGVGIL 261          
The following BLAST results are available for this feature:
BLAST of FC930400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
TYRB_SALTY6.237e-5241.74Aromatic-amino-acid aminotransferase OS=Salmonella... [more]
TYRB_KLEPN1.536e-5039.83Tyrosine aminotransferase OS=Klebsiella pneumoniae... [more]
TYRB_ECOLI1.536e-5041.08Aromatic-amino-acid aminotransferase OS=Escherichi... [more]
TYRB_PARDE7.137e-4843.10Aromatic-amino-acid aminotransferase OS=Paracoccus... [more]
PHHC_PSEAE6.912e-4341.81Aromatic-amino-acid aminotransferase OS=Pseudomona... [more]
AATM_YEAST2.633e-3436.43Aspartate aminotransferase, mitochondrial OS=Sacch... [more]
ATTY_RHIME1.000e-3337.66Tyrosine aminotransferase OS=Rhizobium meliloti GN... [more]
AATC2_BOVIN1.003e-2528.81Putative aspartate aminotransferase, cytoplasmic 2... [more]
AATC2_HUMAN6.084e-2330.04Putative aspartate aminotransferase, cytoplasmic 2... [more]
AATC2_MOUSE5.150e-2230.77Putative aspartate aminotransferase, cytoplasmic 2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34007B07EF PostHarvC1 Citrus clementina cDNA clone C34007B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930400 ID=FC930400; Name=FC930400; organism=Citrus clementina; type=EST; length=733bp
GATGAAAAGAAACTCAACCTTGGAGTCGGTGCTTATCGAACCGAAGAGCT
ACAGCCTTATGTGCTTGATGTTGTTAAGAAGGCAGAGAATCTTATGCTGG
AAAGGGGGGAAAACAAGGAGTATCTTCCAATTGAAGGTTTGGCTGCATTC
AATAAGGTGACAGCAGAGTTATTGTTTGGAGCTGACAACTCAGTGCTAAA
GGAACAAAGAGTTGCAACAGTTCAAGGTCTTTCAGGAACCGGTTCTCTTC
GGCTGGCTGCAGCTCTTATAGAACGATATTTTCCTGGGGCAAAAGTACTA
ATATCATCTCCGACATGGGGTAACCACAAGAACATTTTCAATGATGCTAG
AGTTCCATGGTCTGAGTACCGCTACTATGATCCAAAAACAGTGGGTTTGG
ATTTTGAGGGAATGATAGCAGACATAAAGGCAGCCCCTGGTGGATCTTTT
ATTCTGCTTCATGGTTGTGCTCACAACCCAACTGGCATTGATCCAACCCC
TGAACAATGGGAAAAAATTGCTGATGTCATTCAAGAGAAAAATCATATTC
CATTTTTCGATGTTGCCTACCAGGGATTTGCAAGTGGAAGCCTTGACAAT
GATGCATCATCTGTGAGATTGTTTGCCACACGTGGCATGGAGCTTCTTGT
TGCTCAGTCATACAGTAAAAACCTTGGTCTTTATGCAGAAAGGATTGGAG
CAATGAAATGTGTCTGNTCGTCATCTGATTTAG
back to top