FC930402

Overview
NameFC930402
Unique NameFC930402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:  134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:  134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:  134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:  134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:  134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:  134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:  134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:  134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:  134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:  134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
The following BLAST results are available for this feature:
BLAST of FC930402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2C_PIG1.481e-1157.41Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2C_MOUSE1.481e-1157.41Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN1.481e-1157.41Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]
MEF2C_BOVIN1.481e-1157.41Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_XENLA1.481e-1157.41Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_RAT1.481e-1157.41Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_PONAB1.481e-1157.41Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_PIG1.481e-1157.41Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2A_MOUSE1.481e-1157.41Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_HUMAN1.481e-1157.41Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionC34007B10EF PostHarvC1 Citrus clementina cDNA clone C34007B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930402 ID=FC930402; Name=FC930402; organism=Citrus clementina; type=EST; length=649bp
GAAAGATTACATGTGTAGCTCAAGCAAGTTACCAGCAACCATGGAGTTTC
CAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAGGAAGAGGC
AAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAAGTCACCTT
CTGTAAACGCCGCAATGGATTGTTGAAGAAAGCTTATGAACTGTCTGTCT
TGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTGGCCGCCTT
TATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGGTACAAGAA
AGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGCTAACACTC
AGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCCGGGAGATT
CAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACTTTAAACTT
TAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAATCGGCAGAG
TCAGATCCAAGAAGAACGAAATGTTATTAGCTGAAATCGAGTTCATGGAG
AAGAGGGAAATTCAGCTTCAAAATGATAACATGTACCTGAGAGCAAGGAT
ATCTGAAAATGAGAGAGCACAAACAGAACGGCAATCAGAAAGCATGATG
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