FC930402

Overview
NameFC930402
Unique NameFC930402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.687e-29
Identity = 67/173 (38.73%), Postives = 111/173 (64.16%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTERQSE 640
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFSS+G+L+EY+ +S +   ++RY +             + ++ +  E  KL+ ++  ++   R+ +GE L +L+ KEL++LE +L+  I  +RS+KN+ +   I  ++K++  LQ+ N  L  +I E E+   +++ +
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKEREKKTGQQEGQ 185          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.509e-29
Identity = 67/173 (38.73%), Postives = 113/173 (65.32%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEANTQ---FYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTER 631
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +  S+  T+++Y+K C+ +    ++    ++     + E  KL+ ++  +Q   R++LGE L +L  KEL++LE +L+  +  VR+ + + L+ ++  ++++E  +   N  LR ++ E+   + ++
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQK-CSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQ 184          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.509e-29
Identity = 67/173 (38.73%), Postives = 113/173 (65.32%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEANTQ---FYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTER 631
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +  S+  T+++Y+K C+ +    ++    ++     + E  KL+ ++  +Q   R++LGE L +L  KEL++LE +L+  +  VR+ + + L+ ++  ++++E  +   N  LR ++ E+   + ++
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQK-CSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQ 184          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.509e-29
Identity = 67/162 (41.36%), Postives = 109/162 (67.28%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 607
            N  +RQVTF KRRNGLLKKAYELS+LCDAEVAL++FS  GRLY+++++S +  T++RY++    S +  + T    Q   QE   L+  +  +Q   R++LGE L+ L   EL+ LE+++ + + ++RS+K ++LL E+  ++++E  LQ+ N  L+ ++ E
Sbjct:   13 NKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDE 174          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.509e-29
Identity = 61/146 (41.78%), Postives = 103/146 (70.55%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREI 562
            N T+RQVTF KRR+GL KKA ELS+LCDAEV L+VFSS  RLY++A++S+++ I+RY +   D     +   +  + +QQEA  LR+Q+  +Q  +R +LG+ LS L+ ++L+NLE++LE  +  +R +K+ +++ +I+ + ++ +
Sbjct:   13 NATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSSMKSIIERYNETKEDPHQTMN-ASSEAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRKVV 157          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.509e-29
Identity = 71/165 (43.03%), Postives = 108/165 (65.45%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKK---ACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 607
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T++RY+K      + + P     A     QQE  KL+ +   +Q   R++LGE L  L+ KEL+ LE +L+  + ++R+ + + +L ++  ++ +E  L   N  LR R+++
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLAD 177          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.583e-29
Identity = 72/174 (41.38%), Postives = 111/174 (63.79%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTERQSES 643
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYE+ +++S+  T++RY+K   D  +     + N+Q  + E   L R+I  ++   R ++GE L   + +EL+ LE +L++ + ++R+KK ++L  E E ++++E  L  +N  L  +     R    R S S
Sbjct:   13 NATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNHKRND-NSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGRGIIGRISSS 185          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.817e-29
Identity = 67/163 (41.10%), Postives = 108/163 (66.26%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENE 613
            N   RQVTF KR++GLLKKAYELSVLCDAEV+LI+FS+ G+LYE++N  V  TI+RY + C D+       E +TQ  +QE TKL+ +   +   +R+++GE L  ++ KEL+ LE +LE  +   R +K ++++ ++E + ++E +L + N  L+    +++
Sbjct:   13 NKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYR-CKDNLLDNDTLE-DTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLKLETEDHD 173          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.971e-28
Identity = 65/165 (39.39%), Postives = 106/165 (64.24%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 616
            N  NRQVTF KRR+GLLKKA+E+SVLCDAEVAL++FSS+G+L+EY+ +S +   ++RY +             + ++ +  E  KL+ ++  ++   R+ +GE L +L+ KEL++LE +L   I  +RS+KN+ +   I  ++K++  LQ+ N  L  +I E E+
Sbjct:   13 NKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKEREK 177          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.971e-28
Identity = 64/171 (37.43%), Postives = 112/171 (65.50%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSS---NPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTE 628
            ++T+RQVTF KRR GL+KKA EL++LCDAEV LI+FS+  +LY++A++SV++TI+R+  A  +     NP S      +F+Q+EA  LR+++  +Q   R + G  L+ L+ KEL+N+E++LE  +  +R K+ ++L  EI+ + ++   + ++N+ L  ++    +   E
Sbjct:   13 DSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSSVKSTIERFNTAKMEEQELMNPAS----EVKFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHHENLELSRKVQRIHQENVE 179          
The following BLAST results are available for this feature:
BLAST of FC930402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL8_ARATH2.687e-2938.73Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
MADS7_ORYSJ3.509e-2938.73MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI3.509e-2938.73MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MAD34_ORYSJ3.509e-2941.36MADS-box transcription factor 34 OS=Oryza sativa s... [more]
MAD23_ORYSJ3.509e-2941.78MADS-box transcription factor 23 OS=Oryza sativa s... [more]
AGL9_SINAL3.509e-2943.03Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL14_ARATH4.583e-2941.38Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
AGL13_ARATH7.817e-2941.10Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AGL8_SINAL2.971e-2839.39Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL17_ARATH2.971e-2837.43Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC34007B10EF PostHarvC1 Citrus clementina cDNA clone C34007B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930402 ID=FC930402; Name=FC930402; organism=Citrus clementina; type=EST; length=649bp
GAAAGATTACATGTGTAGCTCAAGCAAGTTACCAGCAACCATGGAGTTTC
CAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAGGAAGAGGC
AAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAAGTCACCTT
CTGTAAACGCCGCAATGGATTGTTGAAGAAAGCTTATGAACTGTCTGTCT
TGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTGGCCGCCTT
TATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGGTACAAGAA
AGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGCTAACACTC
AGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCCGGGAGATT
CAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACTTTAAACTT
TAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAATCGGCAGAG
TCAGATCCAAGAAGAACGAAATGTTATTAGCTGAAATCGAGTTCATGGAG
AAGAGGGAAATTCAGCTTCAAAATGATAACATGTACCTGAGAGCAAGGAT
ATCTGAAAATGAGAGAGCACAAACAGAACGGCAATCAGAAAGCATGATG
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