FC930402

Overview
NameFC930402
Unique NameFC930402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.797e-24
Identity = 63/170 (37.06%), Postives = 101/170 (59.41%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTE 628
            N T+RQVTF KRR GLLKK +ELSVLCDA++ LI+FSS+G+L+EY +  +S+   I RY +    S     + +   Q Y  E  K+RR    +Q   +   G+ LS   ++EL  LE +LE  + ++R++K E++  ++E ++K E  L+ +N  +   +  N+  + E
Sbjct:   16 NKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASL---PVEDNRVQLY-DEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQWLMNNQMYKQE 181          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.292e-23
Identity = 62/172 (36.05%), Postives = 102/172 (59.30%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQFYQ--------QEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISEN 610
            N TNRQVTF KRR GLLKKA EL+VLCDA V +++FSS G+++EY +   S+R  I+ Y+            T  NT F +         E T++R ++ ++    R   G+ LS L   ++ +LE +LE  + +VR++K+++L  +++ + ++E  L++ N +L   I+EN
Sbjct:   13 NATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQ------------TVTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLCRMINEN 172          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.687e-23
Identity = 60/169 (35.50%), Postives = 102/169 (60.36%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTER 631
            N++NRQVT+ KRRNG+LKKA E+SVLCDA V++I+F+S G+++E+++ S+   +D+Y K          + +A  +    E  K+++    +Q   RH+ GE +++LN +EL  LE  LE G+  +R+K+NE+L      M K+   ++ +   L  ++ + E A   R
Sbjct:   13 NSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTG-----RRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVL----RMMRKKTQSMEEEQDQLNCQLRQLEIATMNR 172          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.093e-22
Identity = 58/169 (34.32%), Postives = 102/169 (60.36%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTER 631
            N++NRQVT+ KRRNG+LKKA E+SVLCDA V++I+F+S G+++E+++ S+   +D+Y K          + +A  +    E  K+++    +Q   RH+ GE +++LN +EL  LE  L+ G+  +R+K+N++L      M K+   ++ +   L  ++ + E A   R
Sbjct:   13 NSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTG-----RRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQNDLL----RMMRKKTQSMEEEQDQLNWQLRQLEIASMNR 172          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.428e-22
Identity = 64/166 (38.55%), Postives = 97/166 (58.43%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSS-NPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 616
            N  +RQVTFCKRR GLLKKA ELSVLCDA+V +I+FSS+G+L+E A N ++   ++RY+   A     PG++     Q  +Q    LR +I  +Q   R   G     +   +L  LE  LE  I ++R+ K +M+  EI+F+  +E  L+  N  L+ ++ E ++
Sbjct:   13 NPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGAL--QRQQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEMLQEKVKEQQK 176          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.426e-22
Identity = 71/205 (34.63%), Postives = 107/205 (52.20%), Query Frame = 2
Query:  137 RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY---KKACADSSNPGSI-----------TEANTQFY--------QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARI------------SENERAQTERQSESMM 649
            RQVTF KRR GL KKA EL+VLCDA+VAL+VFSS G+L ++A++++   ID+Y    K    +    SI           T  N+  Y          + + L  Q+ E     R + GE L  L+ +EL+ +E  LE G+ RV   K++  + EI  ++++ IQL  +NM LR ++            +EN   +  + SES+M
Sbjct:   17 RQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQMPQVPTAGLAVPDTENVLTEDGQSSESVM 221          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.256e-22
Identity = 62/163 (38.04%), Postives = 99/163 (60.74%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILG-EALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 607
            N  +RQVTFCKRR GLLKKA ELS+LC+A++ +I+FS+ G+LY+ A   ++   I+RYK A  + +N       +    +QEA  L+++I  +Q   R+I G  A   +  +EL  LE  LE  +  +RS K ++++ EI+ ++ +E  L+  N  L+ +I E
Sbjct:   13 NPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMDP---KQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVE 172          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.256e-22
Identity = 62/163 (38.04%), Postives = 99/163 (60.74%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA-NNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILG-EALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 607
            N  +RQVTFCKRR GLLKKA ELS+LC+A++ +I+FS+ G+LY+ A   ++   I+RYK A  + +N       +    +QEA  L+++I  +Q   R+I G  A   +  +EL  LE  LE  +  +RS K ++++ EI+ ++ +E  L+  N  L+ +I E
Sbjct:   13 NPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMDP---KQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVE 172          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.999e-21
Identity = 57/158 (36.08%), Postives = 99/158 (62.66%), Query Frame = 2
Query:  167 GLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTERQ 634
            GLLKKA EL++LCDA++ +I+FSS G+++E+++   S+R  IDRY+K    S N   + + N Q Y  E T+++ +I ++Q   RH  GE L++L   E+  LE +LE  + +VRS+K ++L  +++ + ++E  L+  N  L   I ++  A  E++
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKL---SGNCAPVYD-NQQVYC-EITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQNRELYRVIQDHHAASMEQK 154          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.337e-20
Identity = 54/163 (33.13%), Postives = 95/163 (58.28%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRAT--IDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 607
            N++NRQVT+ KRRNG++KKA E+SVLCDA V++I+F+S G+++E+ + S      +D Y K          + +   +    E  +++++   +Q   RH+ GE ++TLN+KEL  LE  LE G   +++K+ E     +  M K    ++ +N  L+ ++ +
Sbjct:   13 NSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLSGK-----RLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEF----VRMMRKHNEMVEEENQSLQFKLRQ 166          
The following BLAST results are available for this feature:
BLAST of FC930402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
FBP24_PETHY5.797e-2437.06MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MAD29_ORYSJ1.292e-2336.05MADS-box transcription factor 29 OS=Oryza sativa s... [more]
FBP1_PETHY1.687e-2335.50Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
GLOB_TOBAC1.093e-2234.32Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
MAD33_ORYSJ1.428e-2238.55MADS-box transcription factor 33 OS=Oryza sativa s... [more]
MAD55_ORYSJ5.426e-2234.63MADS-box transcription factor 55 OS=Oryza sativa s... [more]
MAD26_ORYSJ9.256e-2238.04MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI9.256e-2238.04MADS-box transcription factor 26 OS=Oryza sativa s... [more]
AP32_ASAEU5.999e-2136.08MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
GLOB_ANTMA1.337e-2033.13Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]

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Properties
Property NameValue
Genbank descriptionC34007B10EF PostHarvC1 Citrus clementina cDNA clone C34007B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930402 ID=FC930402; Name=FC930402; organism=Citrus clementina; type=EST; length=649bp
GAAAGATTACATGTGTAGCTCAAGCAAGTTACCAGCAACCATGGAGTTTC
CAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAGGAAGAGGC
AAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAAGTCACCTT
CTGTAAACGCCGCAATGGATTGTTGAAGAAAGCTTATGAACTGTCTGTCT
TGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTGGCCGCCTT
TATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGGTACAAGAA
AGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGCTAACACTC
AGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCCGGGAGATT
CAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACTTTAAACTT
TAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAATCGGCAGAG
TCAGATCCAAGAAGAACGAAATGTTATTAGCTGAAATCGAGTTCATGGAG
AAGAGGGAAATTCAGCTTCAAAATGATAACATGTACCTGAGAGCAAGGAT
ATCTGAAAATGAGAGAGCACAAACAGAACGGCAATCAGAAAGCATGATG
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