FC930402

Overview
NameFC930402
Unique NameFC930402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.280e-20
Identity = 56/173 (32.37%), Postives = 98/173 (56.65%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTERQSE 640
            N ++RQVTF KRRNGL++KA +LSVLCDA VAL+V S+ G+LY +++ +++   +DRY K  AD        +     +Q +A         ++ ++  ++G  +  ++   L  LE  LE  +   R+KK E++L  +E ++++E  L+ +N  L +++  N     E + E
Sbjct:   13 NKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHAD--------DLKALDHQSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVLASQMENNHHVGAEAEME 177          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 55/165 (33.33%), Postives = 101/165 (61.21%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQFYQQEAT------KLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRA 595
            N  +RQVTF KRR GLLKKA+E++VLCD +VA IVFS++G L+ YA++  ++   +++Y +    S     I E    F + E +      KLR +I  ++   R+++G+ L +L  ++++ LE +++  +  +RS+K ++L+ +   +EK+  +L+  +  +RA
Sbjct:   13 NEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEE----FPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLMEKNTILEKKITELETLHTCIRA 173          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.889e-20
Identity = 55/167 (32.93%), Postives = 101/167 (60.48%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRA--TIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERA 619
            N++NRQVT+ KRRNG++KKA E++VLCDA+V+LI+F + G+++EY + S      +D Y+K     ++   + +A  +    E  +++++   +Q   RH+ GE +++LN KEL  LE  L  G+  + +K++E+L      + K +  L+ ++  L+  + + E A
Sbjct:   13 NSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQK-----TSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQSEIL----RMVRKNDQILEEEHKQLQYALHQKEMA 170          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.079e-20
Identity = 57/177 (32.20%), Postives = 98/177 (55.37%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA--NNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTERQSESMM 649
            N  NR VTF KRRNGL+KKA E++VLCDA+VALI+F+S G++ +Y   +  + A +D+Y+K          + +A  +    E  +++++   +Q   RH+ GE + +LN K L  +E  +E G+ +VR  + E+L+++     + E  +  +   L  ++ + E A        MM
Sbjct:   13 NANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGK-----KLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEILISK----RRNEKMMAEEQRQLTFQLQQQEMAIASNARGMMM 180          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.079e-20
Identity = 55/146 (37.67%), Postives = 89/146 (60.96%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRAT--IDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKR 556
            N TNRQVTF KRR GLLKKA EL++LCDA++ +IVFS  G++YEY++   R     DRY KA +       +     Q   QE T+++ +   ++ + R  +G+ L++L  +++ NLE ++E  + +VR +K ++L  ++  M  R
Sbjct:   13 NPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAPSTRFEEMDV----QQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQLLEMHSR 154          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.663e-20
Identity = 60/168 (35.71%), Postives = 100/168 (59.52%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSIT-EANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERA 619
            N+TNRQVTF KRR+G+LKKA E+SVLCDAEV +++FSS G+LY+Y +   S+   +++Y+      +N G I  +   +    E  +++++   +Q   RH+ GE L++L  KEL  +E  L+ GI  V    N+ L+   E   + +  L+++N  L  ++ + + A
Sbjct:   13 NSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQ------TNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNV----NDKLMDHWERHVRTDKMLEDENKLLAFKLHQQDIA 170          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.930e-19
Identity = 52/153 (33.99%), Postives = 90/153 (58.82%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS--VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHI-------LGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKR 556
            N TNRQVT+ KRR G++KKA EL+VLCDA+VA+I+FSS G+ +E+ + S  ++   DRY++A              T  + ++   ++R +  ++++NR++       +GE L  L F EL+ LE  ++  +  VR +K  ++  + E  +K+
Sbjct:   13 NATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQA------------IGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKK 153          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 51/153 (33.33%), Postives = 92/153 (60.13%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV--RATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHI-------LGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKR 556
            N TNRQVT+ KRRNGL KKA EL+VLCDA+V++I+ SS G+L+E+ + S+  +   D Y+K                  +     K++ Q+R+++ +NR++       +GE+L+ LN+++L+ L   ++  +  +R +K +++  +IE  +K+
Sbjct:   13 NQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKT------------VGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKK 153          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 60/155 (38.71%), Postives = 89/155 (57.42%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--ANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHI---LGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQN 574
            N TNRQVT+ KRRNGL KKA+EL+VLCDA V++I+FSS  +L+EY   N + +  +D Y+           +    TQ+ + + TK R+ +   +NL   I   LGE L  L+ +EL+ LE  +E     VR +K + L  +IE  +K+    Q+
Sbjct:   13 NQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTI-------SDVDVWATQYERMQETK-RKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQD 159          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.578e-19
Identity = 61/175 (34.86%), Postives = 96/175 (54.86%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSITEANTQFYQ--QEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTERQS 637
            N T RQVTF KRR GL+KK  ELS+LCDA + LIVFS+ G+L E+ +  N +   IDRY       +N   + + +    Q   E   LRR+   ++   R   G  L+++   EL  LE +LE  + +VR +KNE++  ++E + ++   L+ DN  +   + E+  A   +Q+
Sbjct:   13 NQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYL-----HTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAAMEFQQA 182          
The following BLAST results are available for this feature:
BLAST of FC930402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
FLC_ARATH2.280e-2032.37MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
MAD20_ORYSJ2.977e-2033.33MADS-box transcription factor 20 OS=Oryza sativa s... [more]
MADS2_PETHY3.889e-2032.93Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
PIST_ARATH5.079e-2032.20Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MAD31_ORYSJ5.079e-2037.67MADS-box transcription factor 31 OS=Oryza sativa s... [more]
MADS2_ORYSJ8.663e-2035.71MADS-box transcription factor 2 OS=Oryza sativa su... [more]
MAD16_ORYSJ1.930e-1933.99MADS-box transcription factor 16 OS=Oryza sativa s... [more]
MADS1_PETHY4.299e-1933.33Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
AP3_ARATH4.299e-1938.71Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
TT16_ARATH9.578e-1934.86Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC34007B10EF PostHarvC1 Citrus clementina cDNA clone C34007B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930402 ID=FC930402; Name=FC930402; organism=Citrus clementina; type=EST; length=649bp
GAAAGATTACATGTGTAGCTCAAGCAAGTTACCAGCAACCATGGAGTTTC
CAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAGGAAGAGGC
AAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAAGTCACCTT
CTGTAAACGCCGCAATGGATTGTTGAAGAAAGCTTATGAACTGTCTGTCT
TGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTGGCCGCCTT
TATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGGTACAAGAA
AGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGCTAACACTC
AGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCCGGGAGATT
CAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACTTTAAACTT
TAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAATCGGCAGAG
TCAGATCCAAGAAGAACGAAATGTTATTAGCTGAAATCGAGTTCATGGAG
AAGAGGGAAATTCAGCTTCAAAATGATAACATGTACCTGAGAGCAAGGAT
ATCTGAAAATGAGAGAGCACAAACAGAACGGCAATCAGAAAGCATGATG
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