FC930402

Overview
NameFC930402
Unique NameFC930402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig518 contig Ccv1_Contig518:120..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.754e-18
Identity = 50/146 (34.25%), Postives = 89/146 (60.96%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKR 556
            N TNRQVT+ KRRNGL KKA+ELSVLCDA+V++I+ SS  +L+EY +   + +   D+Y+KA         +  ++ +  Q+   KL    R ++   R  +GE+L+ L ++++ NL   ++  +  +R +K +++  +I+  +K+
Sbjct:   13 NQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVG-----VDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKK 153          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.059e-17
Identity = 51/156 (32.69%), Postives = 89/156 (57.05%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLN-FKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 589
            + T RQVTF KRR G LKKA EL+VLCDA+V ++VFS +G+L+++ +  V      ++      +     T  + +    E T+LR +I +++   R   GE LS+++   EL  L+ +LE  + +V ++K+E++  ++E M +    +   N +L
Sbjct:   13 DATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFL 168          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.171e-16
Identity = 54/165 (32.73%), Postives = 88/165 (53.33%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACAD-SSNPGSIT-EANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENE 613
            N+TNRQVTF KRR G+LKKA E+ VLCDAEV +++FSS G+L +Y      +      +      +N G I  +   +    E  +++++   +Q   RH+ GE L++L  KEL  +E  L  G   +R K    ++      ++ E  L++++  L  R+ + E
Sbjct:   13 NSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK----MMDHWRMHKRNEKMLEDEHKMLAFRVHQQE 173          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.449e-16
Identity = 49/163 (30.06%), Postives = 95/163 (58.28%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEA-LSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 607
            N ++RQVTF KRRNGL++KA +LS+LC++ +A++V S  G+LY+ A+ +++   IDRY+   AD      + E    +           ++E+  + +  L E+ +   +   L +LE +LE  +   R++K E+++ E++ ++K E  L+ +N  L +++ +
Sbjct:   13 NKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHADELEALDLAEKTRNYL---------PLKELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTLASQVGK 166          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.164e-14
Identity = 48/139 (34.53%), Postives = 78/139 (56.12%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHI-------LGEALSTLNFKELKNLEARLEKGIGRVRSKK 514
            N TNRQVTF KRRNG++KKA EL+VLCDA+V+L++ SS  +L+ Y +   S++   D Y+K                  ++++  +++ Q R++  LN  +       +G  L  L   EL  L+  +E+ I ++R+KK
Sbjct:   13 NKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKI------------EGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKK 139          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.649e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295
            N  NRQ TF KR+NGL+KKA ELS+LCD E+A+IVFSS  +L++Y++  +   + RY
Sbjct:   15 NERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRDMDKLLIRY 71          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.649e-12
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 2
Query:  134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  RL++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKY 69          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.649e-12
Identity = 47/145 (32.41%), Postives = 78/145 (53.79%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN---NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFME 550
            N T RQ TF KRR+GL KKA EL+VLCDA++ L++FS+ G+LY + +    SVR  ++RY     +++    +     Q  + E  K+      ++   R +  +         L+ LE  LE  + +VRS+K+  +  EI +++
Sbjct:   13 NPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERY-----EATTHTKVWADIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQ 152          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.683e-12
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 2
Query:  134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295
            NRQVTF KR+ G++KKAYELSVLCD E+ALI+FSS  +LY+YA+  +   + +Y
Sbjct:   16 NRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLLKY 69          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 2
Query:  134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69          
The following BLAST results are available for this feature:
BLAST of FC930402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DEFA_ANTMA4.754e-1834.25Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MAD30_ORYSJ1.059e-1732.69MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MADS4_ORYSJ1.171e-1632.73MADS-box transcription factor 4 OS=Oryza sativa su... [more]
AGL31_ARATH4.449e-1630.06Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
CMB2_DIACA4.164e-1434.53MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
SRFC_DICDI6.649e-1254.39Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2B_HUMAN6.649e-1259.26Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MAD32_ORYSJ6.649e-1232.41MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MEF2_DROME8.683e-1259.26Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2C_PONAB1.481e-1157.41Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]

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Properties
Property NameValue
Genbank descriptionC34007B10EF PostHarvC1 Citrus clementina cDNA clone C34007B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930402 ID=FC930402; Name=FC930402; organism=Citrus clementina; type=EST; length=649bp
GAAAGATTACATGTGTAGCTCAAGCAAGTTACCAGCAACCATGGAGTTTC
CAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAGGAAGAGGC
AAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAAGTCACCTT
CTGTAAACGCCGCAATGGATTGTTGAAGAAAGCTTATGAACTGTCTGTCT
TGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTGGCCGCCTT
TATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGGTACAAGAA
AGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGCTAACACTC
AGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCCGGGAGATT
CAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACTTTAAACTT
TAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAATCGGCAGAG
TCAGATCCAAGAAGAACGAAATGTTATTAGCTGAAATCGAGTTCATGGAG
AAGAGGGAAATTCAGCTTCAAAATGATAACATGTACCTGAGAGCAAGGAT
ATCTGAAAATGAGAGAGCACAAACAGAACGGCAATCAGAAAGCATGATG
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