FC930402
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.754e-18 Identity = 50/146 (34.25%), Postives = 89/146 (60.96%), Query Frame = 2 Query: 125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKR 556 N TNRQVT+ KRRNGL KKA+ELSVLCDA+V++I+ SS +L+EY + + + D+Y+KA + ++ + Q+ KL R ++ R +GE+L+ L ++++ NL ++ + +R +K +++ +I+ +K+ Sbjct: 13 NQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVG-----VDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKK 153
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.059e-17 Identity = 51/156 (32.69%), Postives = 89/156 (57.05%), Query Frame = 2 Query: 125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLN-FKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 589 + T RQVTF KRR G LKKA EL+VLCDA+V ++VFS +G+L+++ + V ++ + T + + E T+LR +I +++ R GE LS+++ EL L+ +LE + +V ++K+E++ ++E M + + N +L Sbjct: 13 DATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFL 168
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3) HSP 1 Score: 86.6557 bits (213), Expect = 1.171e-16 Identity = 54/165 (32.73%), Postives = 88/165 (53.33%), Query Frame = 2 Query: 125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACAD-SSNPGSIT-EANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENE 613 N+TNRQVTF KRR G+LKKA E+ VLCDAEV +++FSS G+L +Y + + +N G I + + E +++++ +Q RH+ GE L++L KEL +E L G +R K ++ ++ E L++++ L R+ + E Sbjct: 13 NSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK----MMDHWRMHKRNEKMLEDEHKMLAFRVHQQE 173
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 4.449e-16 Identity = 49/163 (30.06%), Postives = 95/163 (58.28%), Query Frame = 2 Query: 125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEA-LSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 607 N ++RQVTF KRRNGL++KA +LS+LC++ +A++V S G+LY+ A+ +++ IDRY+ AD + E + ++E+ + + L E+ + + L +LE +LE + R++K E+++ E++ ++K E L+ +N L +++ + Sbjct: 13 NKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHADELEALDLAEKTRNYL---------PLKELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTLASQVGK 166
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.164e-14 Identity = 48/139 (34.53%), Postives = 78/139 (56.12%), Query Frame = 2 Query: 125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHI-------LGEALSTLNFKELKNLEARLEKGIGRVRSKK 514 N TNRQVTF KRRNG++KKA EL+VLCDA+V+L++ SS +L+ Y + S++ D Y+K ++++ +++ Q R++ LN + +G L L EL L+ +E+ I ++R+KK Sbjct: 13 NKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKI------------EGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKK 139
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.649e-12 Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 2 Query: 125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295 N NRQ TF KR+NGL+KKA ELS+LCD E+A+IVFSS +L++Y++ + + RY Sbjct: 15 NERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRDMDKLLIRY 71
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 6.649e-12 Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 2 Query: 134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295 NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S RL++YA+ + + +Y Sbjct: 16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKY 69
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.649e-12 Identity = 47/145 (32.41%), Postives = 78/145 (53.79%), Query Frame = 2 Query: 125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN---NSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFME 550 N T RQ TF KRR+GL KKA EL+VLCDA++ L++FS+ G+LY + + SVR ++RY +++ + Q + E K+ ++ R + + L+ LE LE + +VRS+K+ + EI +++ Sbjct: 13 NPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERY-----EATTHTKVWADIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQ 152
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 8.683e-12 Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 2 Query: 134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295 NRQVTF KR+ G++KKAYELSVLCD E+ALI+FSS +LY+YA+ + + +Y Sbjct: 16 NRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLLKY 69
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11 Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 2 Query: 134 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 295 NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S +L++YA+ + + +Y Sbjct: 16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69 The following BLAST results are available for this feature:
BLAST of FC930402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 117
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930402 ID=FC930402; Name=FC930402; organism=Citrus clementina; type=EST; length=649bpback to top |