FC930403

Overview
NameFC930403
Unique NameFC930403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: M2OM_BOVIN (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Bos taurus GN=SLC25A11 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 52/186 (27.96%), Postives = 81/186 (43.55%), Query Frame = 3
Query:  150 KTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGT----YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLK-YKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTA 692
            +T P  +K + G L G+     +QP+D++K R+QL   G     YK   H   ++ R EG+R ++ GL+          T R+G   V       +         + + G  AG   A  + TP EV  IR+     L  +  + YK   +    I++EEG+  LW G  PT+ R     AA   +
Sbjct:   17 RTSPKSVKFLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTSFHALISILRAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAF-VGTPAEVALIRMTADGRLPVDQRRGYKNVFNALFRIVQEEGVPTLWRGCIPTMARAVVVNAAQLAS 201          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: HDMCP_RAT (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog OS=Rattus norvegicus GN=Hdmcp PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 57/205 (27.80%), Postives = 92/205 (44.88%), Query Frame = 3
Query:  168 MKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSN-------AVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQ-------QQR-------GLSPELL-----------KYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            M  V+G++GGV       P+D +K ++Q  T   Y  I HC     R E +   ++GL+     ++L  ++  G+          F+    D K  K       ++G  +G++    + +P EV K+RLQ       QQR        ++P L            KY GP+HC   + REEGL GL+ G++  ++R G + A  F
Sbjct:    1 MDFVAGAIGGVCGVAVGYPLDTVKVKIQ--TEAKYTSIWHCVRDTYRQERLWGFYRGLSLPVCTVSLVSSVSFGTYHHCLAHICRFRYGSTDVKPTKADIT---LSGCASGLVRVF-LTSPTEVAKVRLQTQAQSQTQQRRPSASWTSVAPALCPAPTACLEPRPKYSGPLHCLVTVAREEGLRGLYKGSSALLLREGHSFATYF 199          
The following BLAST results are available for this feature:
BLAST of FC930403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
M2OM_BOVIN8.587e-1127.96Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
HDMCP_RAT8.587e-1127.80Hepatocellular carcinoma down-regulated mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionC34007B11EF PostHarvC1 Citrus clementina cDNA clone C34007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930403 ID=FC930403; Name=FC930403; organism=Citrus clementina; type=EST; length=707bp
ATAACAAACACTCAGGAGGGAAGCAAGAAGAAGAGAAGCAATTCCCAGAA
GCACTTCTCTTCTTCTTCTCCAACTTCCCACTGTAAGCTTTTGGACACTT
GTTTTCTATGGATAATAAGCGAGAGCAAAACCCGAGCCCGGTTCCGAAGA
AGACGATCCCACCGTACATGAAAGCGGTGTCGGGTTCTCTCGGAGGGGTC
GTGGAGGCTTGTTGCTTGCAGCCAATCGACGTCATCAAGACGAGGTTACA
GCTGGACACAACTGGGACTTACAAGGGAATTATCCACTGCGGCGCCACCG
TTTCGCGTACCGAAGGCGTGCGGGCTCTGTGGAAAGGATTGACGCCGTTT
GCCACCCACTTGACCTTAAAGTACACGCTTCGAATGGGATCGAATGCCGT
GTTTCAATCGGCGTTTAAGGATTCTAAAACGGGGAAGATTAGCAATCAGG
GTCGGCTAATGGCTGGCTTTGGTGCTGGTGTGCTTGAAGCTCTCGCTATT
GTTACTCCTTTTGAGGTGGTGAAAATTAGACTACAACAGCAGAGAGGTTT
GAGTCCTGAGCTTCTAAAGTACAAGGGTCCTATACACTGTGCTCGTATGA
TCATCCGTGAGGAAGGACTCTTTGGACTCTGGGCAGGGGCTGCCCCAACT
GTTATGCGCAATGGGACAAACCAAGCTGCCATGTTTACGGCTAAAAATGC
TTTTGAT
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