FC930403

Overview
NameFC930403
Unique NameFC930403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930403_ssr58 microsatellite FC930403_ssr58:58..69. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4798 contig Ccv1_Contig4798:78..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: AGC1_YEAST (Mitochondrial aspartate-glutamate transporter AGC1 OS=Saccharomyces cerevisiae GN=AGC1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 53/169 (31.36%), Postives = 84/169 (49.70%), Query Frame = 3
Query:  183 GSLGGVVEACCLQPIDVIKTRLQLD-TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            GS+ G + A  + PID IKTR+Q   +   YK  I C   +   EG++ L+ GL P    +  +  +++  N   ++   D K GK+S    +++G  AG  + +    P E+VKIRLQ Q     E ++       A  I+++ GL GL+ G A  +MR+    A  F
Sbjct:  537 GSIAGCIGATVVYPIDFIKTRMQAQRSLAQYKNSIDCLLKIISREGIKGLYSGLGPQLIGVAPEKAIKLTVNDFMRNRLTD-KNGKLSLFPEIISGASAGACQVI-FTNPLEIVKIRLQVQSDYVGENIQQAN--ETATQIVKKLGLRGLYNGVAACLMRDVPFSAIYF 701          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: MCFX_DICDI (Mitochondrial substrate carrier family protein X OS=Dictyostelium discoideum GN=mcfX PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 56/190 (29.47%), Postives = 100/190 (52.63%), Query Frame = 3
Query:  117 KREQNPSPVPKKTIPP--YMKAVSGSLGGVVEACCLQPIDVIKTRLQ-----LDTTGTYKGIIHCGATVSRTE-GVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            +++Q    + K  + P  Y   ++G++ GV+ +  + P+D +KTRLQ     +D +  Y GII C   V + E GVR L++GL+     +  +  L++  N  F++ F+  ++  I     + +G  AG+ + +A   P E+VKIR+Q   GLS       G     + ++ E G+ GL+ G A T++R+
Sbjct:    3 QQQQQQQQIKKNQVKPPLYSNLIAGAIAGVIGSSVVFPLDFVKTRLQQQRVSIDGSKQYNGIIDCFKKVIKNEGGVRGLYRGLSSNLIGIIPEKALKLAMNDYFRTRFQGDRS-YIKLWEEVASGGLAGMCQVVA-TNPMELVKIRMQVS-GLS-------GKKASLKEVVSELGIKGLYKGTASTLLRD 182          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: CMC_DICDI (Calcium-binding mitochondrial carrier protein OS=Dictyostelium discoideum GN=mcfO PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 3
Query:  183 GSLGGVVEACCLQPIDVIKTRLQLDTT-----GTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            GS+ G + A  + PID++KTR+Q           Y     C   V + EGVR L+KG+ P    +  +  +++  N + +  F D   G+I     ++AG  AG +  + +  P E+VKIRLQ Q           GP   A  II+E GL GL+ GA   ++R+
Sbjct:  445 GSIAGGIGAAAVYPIDLVKTRMQNQRAVDPAKRLYVNSWDCFKKVVKFEGVRGLYKGILPQMVGVAPEKAIKLTVNDLLRDLFGDKSKGEIYFPLEVLAGGFAG-MSQVCVTNPLEIVKIRLQVQS---------TGPKVSAITIIKELGLAGLYKGAGACLLRD 599          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: COLT_DROME (Congested-like trachea protein OS=Drosophila melanogaster GN=colt PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 50/173 (28.90%), Postives = 83/173 (47.98%), Query Frame = 3
Query:  162 PYMKAVSGSLGGVVEACCLQPIDVIKTRLQL------DTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            P    ++G  GG+       P+D IK RLQ            Y+G   C A   + EGVR L+KG++   T +   + +     A+ +   +  +  K++     +AG  +G+   L I+ P E +K+ LQ Q+G   E  KY G I CA  + +E GL  ++ G+  T++R+
Sbjct:   15 PVKSFLTGGFGGICNVLSGHPLDTIKVRLQTMPRPAPGEQPLYRGTFDCAAKTIKNEGVRGLYKGMSAPLTGVAPIFAMCFAGYALGKRLQQRGEDAKLTYPQIFVAGSFSGLFSTL-IMAPGERIKVLLQTQQGQGGE-RKYNGMIDCAGKLYKEGGLRSVFKGSCATMLRD 185          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: YFG5_SCHPO (Uncharacterized mitochondrial carrier C19G12.05 OS=Schizosaccharomyces pombe GN=SPAC19G12.05 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 53/182 (29.12%), Postives = 87/182 (47.80%), Query Frame = 3
Query:  162 PYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALW-KGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGL-SPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNA 701
            P    ++G + G +E     P +  KTRLQL     Y+ +     T ++       W +G +      +LK  +R  +    + +  D   G ++    ++AG GAGV E++ ++TPFE +K  +   R   +P L   KG +  +R+I+ E G+ GL+ G A TV R   N    FTA N+
Sbjct:   17 PVKSIIAGGVAGAIEISITYPAEFAKTRLQL-----YRNV---EGTKAKLPPFGLEWYRGCSTVIVGNSLKAAVRFFAFDSIKKSLSDEH-GHLTGPRTVLAGLGAGVAESVLVLTPFESIKTAIIDDRKRPNPRL---KGFLQASRIIVHENGIRGLYRGLAATVARQAANSGVRFTAYNS 186          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: YEA6_YEAST (Probable mitochondrial carrier YEL006W OS=Saccharomyces cerevisiae GN=YEL006W PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 60/186 (32.26%), Postives = 86/186 (46.24%), Query Frame = 3
Query:  147 KKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLD-------TTGTYKGIIHCGATVSRTEGVRALWKGLTP----FATHLTLKYTL----RMGSNAVF-QSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVM 656
            KK   P + A+SG+L G + A  + P DV KTRLQ          +  YKG     AT+ + EG   L+KGL P    +   L + +++    R  S  +F  S F  + +  I+          AG +  +A   P  VVK RL  Q G+      YKG I   R II++EG   L+AG  P ++
Sbjct:   33 KKNADPRVAAISGALSGALSAMLVCPFDVAKTRLQAQGLQNMTHQSQHYKGFFGTFATIFKDEGAAGLYKGLQPTVLGYIPTLMIYFSVYDFCRKYSVDIFPHSPFLSNASSAIT----------AGAISTVA-TNPIWVVKTRLMLQTGIGKYSTHYKGTIDTFRKIIQQEGAKALYAGLVPALL 207          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: CMC_DROME (Calcium-binding mitochondrial carrier protein Aralar1 OS=Drosophila melanogaster GN=aralar1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 55/174 (31.61%), Postives = 83/174 (47.70%), Query Frame = 3
Query:  183 GSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGII------HCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            GS  G V A  + PID++KTR+Q    G+Y G +       C   V R EG   L++GL P    +  +  +++  N + +    D K G I     ++AG  AG  + +    P E+VKIRLQ    ++       G    A  ++RE GLFGL+ GA   ++R+    A  F
Sbjct:  349 GSFAGAVGATVVYPIDLVKTRMQNQRAGSYIGEVAYRNSWDCFKKVVRHEGFMGLYRGLLPQLMGVAPEKAIKLTVNDLVRDKLTDKK-GNIPTWAEVLAGGCAGASQ-VVFTNPLEIVKIRLQVAGEIA------SGSKIRAWSVVRELGLFGLYKGARACLLRDVPFSAIYF 514          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP2_RAT (Mitochondrial uncoupling protein 2 OS=Rattus norvegicus GN=Ucp2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 60/184 (32.61%), Postives = 88/184 (47.83%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQ----PIDVIKTRLQLD----------TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGS-NAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            +PP   A    LG    AC       P+D  K RLQ+            +  Y+G++    T+ RTEG R+L+ GL           ++R+G  ++V Q   K S+   I +  RL+AG   G L A+A+  P +VVK+R Q Q        +Y+  +   + I REEG+ GLW G +P V RN
Sbjct:    9 VPP--TATVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLARTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGS--RLLAGSTTGAL-AVAVAQPTDVVKVRFQAQARAGGGR-RYQSTVEAYKTIAREEGIRGLWKGTSPNVARN 186          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP2_PONAB (Mitochondrial uncoupling protein 2 OS=Pongo abelii GN=UCP2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 60/184 (32.61%), Postives = 88/184 (47.83%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQ----PIDVIKTRLQLD----------TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGS-NAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            +PP   A    LG    AC       P+D  K RLQ+            +  Y+G++    T+ RTEG R+L+ GL           ++R+G  ++V Q   K S+   I +  RL+AG   G L A+A+  P +VVK+R Q Q        +Y+  ++  + I REEG  GLW G +P V RN
Sbjct:    9 VPP--TATVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGPVHATASAQYRGVMGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHASIGS--RLLAGSTTGAL-AVAVAQPTDVVKVRFQAQARAGGGR-RYQSTVNAYKTIAREEGFRGLWKGTSPNVARN 186          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP2_MOUSE (Mitochondrial uncoupling protein 2 OS=Mus musculus GN=Ucp2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 60/184 (32.61%), Postives = 88/184 (47.83%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQ----PIDVIKTRLQLD----------TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGS-NAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            +PP   A    LG    AC       P+D  K RLQ+            +  Y+G++    T+ RTEG R+L+ GL           ++R+G  ++V Q   K S+   I +  RL+AG   G L A+A+  P +VVK+R Q Q        +Y+  +   + I REEG+ GLW G +P V RN
Sbjct:    9 VPP--TATVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGS--RLLAGSTTGAL-AVAVAQPTDVVKVRFQAQARAGGGR-RYQSTVEAYKTIAREEGIRGLWKGTSPNVARN 186          
The following BLAST results are available for this feature:
BLAST of FC930403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
AGC1_YEAST1.415e-1331.36Mitochondrial aspartate-glutamate transporter AGC1... [more]
MCFX_DICDI1.849e-1329.47Mitochondrial substrate carrier family protein X O... [more]
CMC_DICDI2.414e-1332.12Calcium-binding mitochondrial carrier protein OS=D... [more]
COLT_DROME4.118e-1328.90Congested-like trachea protein OS=Drosophila melan... [more]
YFG5_SCHPO7.025e-1329.12Uncharacterized mitochondrial carrier C19G12.05 OS... [more]
YEA6_YEAST7.025e-1332.26Probable mitochondrial carrier YEL006W OS=Saccharo... [more]
CMC_DROME7.025e-1331.61Calcium-binding mitochondrial carrier protein Aral... [more]
UCP2_RAT9.175e-1332.61Mitochondrial uncoupling protein 2 OS=Rattus norve... [more]
UCP2_PONAB9.175e-1332.61Mitochondrial uncoupling protein 2 OS=Pongo abelii... [more]
UCP2_MOUSE9.175e-1332.61Mitochondrial uncoupling protein 2 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC34007B11EF PostHarvC1 Citrus clementina cDNA clone C34007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930403 ID=FC930403; Name=FC930403; organism=Citrus clementina; type=EST; length=707bp
ATAACAAACACTCAGGAGGGAAGCAAGAAGAAGAGAAGCAATTCCCAGAA
GCACTTCTCTTCTTCTTCTCCAACTTCCCACTGTAAGCTTTTGGACACTT
GTTTTCTATGGATAATAAGCGAGAGCAAAACCCGAGCCCGGTTCCGAAGA
AGACGATCCCACCGTACATGAAAGCGGTGTCGGGTTCTCTCGGAGGGGTC
GTGGAGGCTTGTTGCTTGCAGCCAATCGACGTCATCAAGACGAGGTTACA
GCTGGACACAACTGGGACTTACAAGGGAATTATCCACTGCGGCGCCACCG
TTTCGCGTACCGAAGGCGTGCGGGCTCTGTGGAAAGGATTGACGCCGTTT
GCCACCCACTTGACCTTAAAGTACACGCTTCGAATGGGATCGAATGCCGT
GTTTCAATCGGCGTTTAAGGATTCTAAAACGGGGAAGATTAGCAATCAGG
GTCGGCTAATGGCTGGCTTTGGTGCTGGTGTGCTTGAAGCTCTCGCTATT
GTTACTCCTTTTGAGGTGGTGAAAATTAGACTACAACAGCAGAGAGGTTT
GAGTCCTGAGCTTCTAAAGTACAAGGGTCCTATACACTGTGCTCGTATGA
TCATCCGTGAGGAAGGACTCTTTGGACTCTGGGCAGGGGCTGCCCCAACT
GTTATGCGCAATGGGACAAACCAAGCTGCCATGTTTACGGCTAAAAATGC
TTTTGAT
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