FC930403

Overview
NameFC930403
Unique NameFC930403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP2_HUMAN (Mitochondrial uncoupling protein 2 OS=Homo sapiens GN=UCP2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 60/184 (32.61%), Postives = 88/184 (47.83%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQ----PIDVIKTRLQLD----------TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGS-NAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            +PP   A    LG    AC       P+D  K RLQ+            +  Y+G++    T+ RTEG R+L+ GL           ++R+G  ++V Q   K S+   I +  RL+AG   G L A+A+  P +VVK+R Q Q        +Y+  ++  + I REEG  GLW G +P V RN
Sbjct:    9 VPP--TATVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGPVRATASAQYRGVMGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHASIGS--RLLAGSTTGAL-AVAVAQPTDVVKVRFQAQARAGGGR-RYQSTVNAYKTIAREEGFRGLWKGTSPNVARN 186          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: ODC_PONAB (Mitochondrial 2-oxodicarboxylate carrier OS=Pongo abelii GN=SLC25A21 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 57/179 (31.84%), Postives = 87/179 (48.60%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLDTTGT----YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRL---MAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREE--GLFGLWAGAAPTVMRNGTNQAAMF 686
            V+G   G+VE C + P+DV+KTR Q+    T    YK ++     + +TE +   +KG+ P     T K  ++  +   ++        G +S    L   +AG G+G+ EA+ +V PFEVVK+ LQ  R       K    +  AR II++E  GL GL  G   T+ R+G      F
Sbjct:   18 VAGGSAGLVEICLMHPLDVVKTRFQIQRCATDPNSYKSLVDSFRMIFQTERLFGFYKGILPPILAETPKRAVKFFTFEQYKKLL-----GYVSLSPALTFTIAGLGSGLTEAI-VVNPFEVVKVGLQANRN---TFAKQPSTVGYARQIIKKEGWGLQGLNKGLTATLGRHGVFNMVYF 187          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: ODC_HUMAN (Mitochondrial 2-oxodicarboxylate carrier OS=Homo sapiens GN=SLC25A21 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 57/179 (31.84%), Postives = 87/179 (48.60%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLDTTGT----YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRL---MAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREE--GLFGLWAGAAPTVMRNGTNQAAMF 686
            V+G   G+VE C + P+DV+KTR Q+    T    YK ++     + + EG+   +KG+ P     T K  ++  +   ++        G +S    L   +AG G+G+ EA+ +V PFEVVK+ LQ  R    E       +  AR II++E  GL GL  G   T+ R+G      F
Sbjct:   18 VAGGSAGLVEICLMHPLDVVKTRFQIQRCATDPNSYKSLVDSFRMIFQMEGLFGFYKGILPPILAETPKRAVKFFTFEQYKKLL-----GYVSLSPALTFAIAGLGSGLTEAI-VVNPFEVVKVGLQANRNTFAE---QPSTVGYARQIIKKEGWGLQGLNKGLTATLGRHGVFNMVYF 187          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: HDMCP_HUMAN (Hepatocellular carcinoma down-regulated mitochondrial carrier protein OS=Homo sapiens GN=HDMCP PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 60/201 (29.85%), Postives = 94/201 (46.77%), Query Frame = 3
Query:  168 MKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTG----KISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQ-------QQRGLS-----------------PELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            M  V+G++GGV       P+D +K R+Q  T   Y GI HC       E V   ++GL+     ++L  ++  G+     +     + G    K +     ++G  +G++    + +P EV K+RLQ       QQR LS                 PE  KY+GP+HC   + REEGL GL+ G++  V+R+G + A  F
Sbjct:    1 MDFVAGAIGGVCGVAVGYPLDTVKVRIQ--TEPKYTGIWHCVRDTYHRERVWGFYRGLSLPVCTVSLVSSVSFGTYRHCLAHICRLRYGNPDAKPTKADITLSGCASGLVRVF-LTSPTEVAKVRLQTQTQAQKQQRRLSASGPLAVPPMCPVPPACPEP-KYRGPLHCLATVAREEGLCGLYKGSSALVLRDGHSFATYF 197          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP2_BOVIN (Mitochondrial uncoupling protein 2 OS=Bos taurus GN=UCP2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 60/184 (32.61%), Postives = 87/184 (47.28%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQ----PIDVIKTRLQLD----------TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGS-NAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            +PP   A    LG    AC       P+D  K RLQ+            +  Y+G++    T+ RTEG R+L+ GL           ++R+G  ++V Q   K S+   I +  RL+AG   G L A+A+  P +VVK+R Q Q        +Y+  +   + I REEG  GLW G +P V RN
Sbjct:    9 VPP--TATVKFLGAGTAACIADLITFPLDTAKVRLQIQGERQGPMQAAASAQYRGVLGTILTMVRTEGPRSLYSGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGS--RLLAGSTTGAL-AVAVAQPTDVVKVRFQAQARAGAGR-RYQSTVEAYKTIAREEGFRGLWKGTSPNVARN 186          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP3_PIG (Mitochondrial uncoupling protein 3 OS=Sus scrofa GN=UCP3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 50/180 (27.78%), Postives = 80/180 (44.44%), Query Frame = 3
Query:  171 KAVSGSLGGVVEACCLQPIDVIKTRLQLD------TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTA 692
            + ++G   G +   C QP DV+K R Q        +   Y G +    T++R EGVR LWKG+ P  T   +     M +  V +    D      +     ++ FGAG   A  + +P +VVK R       SP   +Y+ P+ C   ++ +EG    + G  P+ +R G+    MF +
Sbjct:  116 RILAGCTTGAMAVTCAQPTDVVKVRFQASIHAGPRSNRKYSGTMDAYRTIAREEGVRGLWKGILPNITRNAIVNCAEMVTYDVIKEKVLDYHLLTDNLPCHFVSAFGAGFC-ATVVASPVDVVKTRYMN----SPP-GQYQNPLDCMLKMVTQEGPTAFYKGFTPSFLRLGSWNVVMFVS 289          

HSP 2 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 54/179 (30.17%), Postives = 78/179 (43.58%), Query Frame = 3
Query:  189 LGGVVEACCLQ----PIDVIKTRLQLD------TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPEL-LKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNG-TNQAAMFT 689
            LG    AC       P+D  K RLQ+        +  Y+G++    T+ R EG R+ + GL           ++R+G     +  +    +   S   R++AG   G + A+    P +VVK+R Q      P    KY G +   R I REEG+ GLW G  P + RN   N A M T
Sbjct:   18 LGAGTAACFADLLTFPLDTAKVRLQIQGENQAARSAQYRGVLGTILTMVRNEGPRSPYNGLVAGLQRQMSFASIRIGLYDSVKQLYTPKGSDHSSITTRILAGCTTGAM-AVTCAQPTDVVKVRFQASIHAGPRSNRKYSGTMDAYRTIAREEGVRGLWKGILPNITRNAIVNCAEMVT 195          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP1_RAT (Mitochondrial brown fat uncoupling protein 1 OS=Rattus norvegicus GN=Ucp1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 54/179 (30.17%), Postives = 80/179 (44.69%), Query Frame = 3
Query:  144 PKKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGT------YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            P   +  +   VS  L  ++      P+D  K RLQ+   G       YKG++    T+++TEG+  L+ GL           +LR+G     Q  F   +    S   ++ AG   G + A+ I  P EVVK+R+Q Q  L     +Y G  +  R+I   E L  LW G  P +MRN
Sbjct:   11 PTMGVKIFSAGVSACLADIITF----PLDTAKVRLQIQGEGQASSTIRYKGVLGTITTLAKTEGLPKLYSGLPAGIQRQISFASLRIGLYDTVQEYFSSGRETPASLGSKISAGLMTGGV-AVFIGQPTEVVKVRMQAQSHLHGIKPRYTGTYNAYRVIATTESLSTLWKGTTPNLMRN 184          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: S2538_ASPCL (Solute carrier family 25 member 38 homolog OS=Aspergillus clavatus GN=ACLA_051330 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 58/205 (28.29%), Postives = 92/205 (44.88%), Query Frame = 3
Query:  105 SMDNKREQNPSPVPKKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGL-------TPFATHLTLKYTL---RMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFT 689
            S D K   + S +PK  +  +    +G++  V     + P+ V+K R + D    Y+ ++  G  + RTEGVR L+ G         P+A    L Y     R+ S A  + + +  KT   S+   +  G  AG+  A AI  PF+ VK RLQ   G      KY   +   R++I E+G+  L+ G    + R   + A  +T
Sbjct:  120 SSDGKARTSSSALPK--LSNWANLATGAIARVAAGFVMMPVTVLKVRYESDYYA-YRSLVGAGRDIVRTEGVRGLFSGFGATAARDAPYAGLYVLFYEQLKRRLASVASSEYSEQPLKTSSSSSINFVSGGLAAGL--ATAITNPFDAVKTRLQLMPG------KYGNMMRAVRLMIHEDGVRSLFGGLGLRITRKALSSALAWT 313          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: MCATL_MOUSE (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Mus musculus GN=Slc25a29 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 54/163 (33.13%), Postives = 78/163 (47.85%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLDTTGT--YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMR 659
            ++G  GGV       P D++K RLQ+ +T    Y+G +HC  ++ + E V  L+KGL      LT    L  G       A      G+ S   + +AG  AG ++ + I  P E+ K RLQ Q  + P    YKG + C   I R EGL G+  G   T++R
Sbjct:    6 LAGCAGGVAGVIVGHPFDIVKVRLQVQSTEKPQYRGTLHCFQSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRAL-----GQDSPLNQFLAGAAAGAIQCV-ICCPMELAKTRLQLQ-AVGP-ARTYKGSLDCLVQIYRHEGLRGINRGMVSTLLR 160          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP2_CANFA (Mitochondrial uncoupling protein 2 OS=Canis familiaris GN=UCP2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 60/184 (32.61%), Postives = 87/184 (47.28%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQ----PIDVIKTRLQLD----------TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGS-NAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            +PP   A    LG    AC       P+D  K RLQ+            +  Y+G++    T+ RTEG R+L+ GL           ++R+G  ++V Q   K S+   I +  RL+AG   G L A+A+  P +VVK+R Q Q        +Y+  +   + I REEG  GLW G +P V RN
Sbjct:    9 VPP--TATVKFLGAGTAACIADLITFPLDTAKVRLQIQGERQGPVRAAASAQYRGVLCTILTMVRTEGPRSLYSGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGS--RLLAGSTTGAL-AVAVAQPTDVVKVRFQAQARAGSGR-RYQSTVDAYKTIAREEGFRGLWKGTSPNVARN 186          
The following BLAST results are available for this feature:
BLAST of FC930403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
UCP2_HUMAN9.175e-1332.61Mitochondrial uncoupling protein 2 OS=Homo sapiens... [more]
ODC_PONAB9.175e-1331.84Mitochondrial 2-oxodicarboxylate carrier OS=Pongo ... [more]
ODC_HUMAN9.175e-1331.84Mitochondrial 2-oxodicarboxylate carrier OS=Homo s... [more]
HDMCP_HUMAN9.175e-1329.85Hepatocellular carcinoma down-regulated mitochondr... [more]
UCP2_BOVIN1.198e-1232.61Mitochondrial uncoupling protein 2 OS=Bos taurus G... [more]
UCP3_PIG1.565e-1227.78Mitochondrial uncoupling protein 3 OS=Sus scrofa G... [more]
UCP1_RAT1.565e-1230.17Mitochondrial brown fat uncoupling protein 1 OS=Ra... [more]
S2538_ASPCL1.565e-1228.29Solute carrier family 25 member 38 homolog OS=Aspe... [more]
MCATL_MOUSE1.565e-1233.13Mitochondrial carnitine/acylcarnitine carrier prot... [more]
UCP2_CANFA2.044e-1232.61Mitochondrial uncoupling protein 2 OS=Canis famili... [more]

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Properties
Property NameValue
Genbank descriptionC34007B11EF PostHarvC1 Citrus clementina cDNA clone C34007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930403 ID=FC930403; Name=FC930403; organism=Citrus clementina; type=EST; length=707bp
ATAACAAACACTCAGGAGGGAAGCAAGAAGAAGAGAAGCAATTCCCAGAA
GCACTTCTCTTCTTCTTCTCCAACTTCCCACTGTAAGCTTTTGGACACTT
GTTTTCTATGGATAATAAGCGAGAGCAAAACCCGAGCCCGGTTCCGAAGA
AGACGATCCCACCGTACATGAAAGCGGTGTCGGGTTCTCTCGGAGGGGTC
GTGGAGGCTTGTTGCTTGCAGCCAATCGACGTCATCAAGACGAGGTTACA
GCTGGACACAACTGGGACTTACAAGGGAATTATCCACTGCGGCGCCACCG
TTTCGCGTACCGAAGGCGTGCGGGCTCTGTGGAAAGGATTGACGCCGTTT
GCCACCCACTTGACCTTAAAGTACACGCTTCGAATGGGATCGAATGCCGT
GTTTCAATCGGCGTTTAAGGATTCTAAAACGGGGAAGATTAGCAATCAGG
GTCGGCTAATGGCTGGCTTTGGTGCTGGTGTGCTTGAAGCTCTCGCTATT
GTTACTCCTTTTGAGGTGGTGAAAATTAGACTACAACAGCAGAGAGGTTT
GAGTCCTGAGCTTCTAAAGTACAAGGGTCCTATACACTGTGCTCGTATGA
TCATCCGTGAGGAAGGACTCTTTGGACTCTGGGCAGGGGCTGCCCCAACT
GTTATGCGCAATGGGACAAACCAAGCTGCCATGTTTACGGCTAAAAATGC
TTTTGAT
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