FC930403

Overview
NameFC930403
Unique NameFC930403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP1_PHOSU (Mitochondrial brown fat uncoupling protein 1 OS=Phodopus sungorus GN=UCP1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 51/153 (33.33%), Postives = 72/153 (47.06%), Query Frame = 3
Query:  222 PIDVIKTRLQLDTTGT------YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            P+D  K RLQ+   G       YKG++    T+++TEG+  L+ GL           +LR+G     Q  F   K    +   R+ AG   G + A+ I  P EVVK+RLQ Q  L     +Y G  +  R+I   E L  LW G  P ++RN
Sbjct:   33 PLDTAKVRLQIQGEGQTSSTIRYKGVLGTITTLAKTEGLPKLYSGLPAGIQRQISFASLRIGLYDTVQEYFSSGKETPPTLVNRISAGLMTGGV-AVFIGQPTEVVKVRLQAQSHLHGIKPRYTGTYNAYRIIATTESLSTLWKGTTPNLLRN 184          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: ODC_MOUSE (Mitochondrial 2-oxodicarboxylate carrier OS=Mus musculus GN=Slc25a21 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 56/173 (32.37%), Postives = 87/173 (50.29%), Query Frame = 3
Query:  171 KAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGT----YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQS--AFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGL--FGLWAGAAPTVMRNG 665
            +  +G   G+VE C + P+DV+KTR Q+  + T    Y+ +      + RTEG+   +KG+ P     T K  ++  +  +++    +     G       L+AG G+G+ EA+ +V PFEVVK+ LQ  R L  E          AR II++EGL   GL  G   T+ R+G
Sbjct:   15 QVAAGGSAGLVEICLMHPLDVVKTRFQVQRSVTDPQSYRTVRGSFQMIFRTEGLFGFYKGIIPPILAETPKRAVKFSTFELYKKFLGYMSLSPGLTF----LIAGLGSGLTEAV-VVNPFEVVKVGLQVNRNLFKE---QPSTFAYARQIIKKEGLGFQGLNKGLTATLGRHG 179          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: MCFS_DICDI (Mitochondrial substrate carrier family protein S OS=Dictyostelium discoideum GN=mcfS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 60/170 (35.29%), Postives = 80/170 (47.06%), Query Frame = 3
Query:  192 GGVVEACCL---QPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLT-PFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFT 689
            G V  A CL    P D I+ RLQ  T+ T  GI+ C     + EG   L+KG+T P    +     L  G   +     KD  T     Q  +  GF AGV  A  ++TP E+VK RLQ Q    P+  KYKG + C   I++E G+ G + G  PT+ R      A F+
Sbjct:   13 GTVAGAACLFTGHPFDTIRVRLQ--TSNTPIGIMECFRNTIKYEGFSGLYKGVTSPLFGMMFETAVLFAGYGQMKVLLQKDENTPLTVGQCAIAGGF-AGV-GASVVLTPVELVKCRLQVQT-TGPQ--KYKGSLDCLVQILKEGGIRGAYRGFTPTIAREFVGNMAFFS 175          

HSP 2 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 50/186 (26.88%), Postives = 89/186 (47.85%), Query Frame = 3
Query:  174 AVSGSLGGVVEACCLQPIDVIKTRLQLDTTG--TYKGIIHCGATVSRTEGVRALWKGLTP------------FATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFT 689
            A++G   GV  +  L P++++K RLQ+ TTG   YKG + C   + +  G+R  ++G TP            F+T+ T K   +   N       K +   +++    +++G G G +    ++ P +V K ++Q   G  P        +   + I  +EG+ GL+ G  PT++R+    AAMF+
Sbjct:  102 AIAGGFAGVGASVVLTPVELVKCRLQVQTTGPQKYKGSLDCLVQILKEGGIRGAYRGFTPTIAREFVGNMAFFSTYETCKRYFKNKEN-------KPNDDDELNLPALIISG-GLGGMAYWTVLYPVDVAKSKIQISEGAGPS----PSIVKVLKEIYSKEGVKGLFRGYTPTIIRSFPANAAMFS 275          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP1_MOUSE (Mitochondrial brown fat uncoupling protein 1 OS=Mus musculus GN=Ucp1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 54/179 (30.17%), Postives = 80/179 (44.69%), Query Frame = 3
Query:  144 PKKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGT------YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            P   +  +   VS  L  ++      P+D  K RLQ+   G       YKG++    T+++TEG+  L+ GL           +LR+G     Q  F   +    S   ++ AG   G + A+ I  P EVVK+R+Q Q  L     +Y G  +  R+I   E L  LW G  P +MRN
Sbjct:   11 PTMGVKIFSAGVSACLADIITF----PLDTAKVRLQIQGEGQASSTIRYKGVLGTITTLAKTEGLPKLYSGLPAGIQRQISFASLRIGLYDSVQEYFSSGRETPASLGNKISAGLMTGGV-AVFIGQPTEVVKVRMQAQSHLHGIKPRYTGTYNAYRVIATTESLSTLWKGTTPNLMRN 184          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: SCMC2_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus tropicalis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 52/187 (27.81%), Postives = 90/187 (48.13%), Query Frame = 3
Query:  147 KKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTP------------FATHLTLK--YTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGL--SPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMR 659
            ++T+  + + V+GSL GV+    + P++V+KTR+ L  TG Y+G++ CG  +   EGV A +KG  P             A + TLK  +  R  +++     F     G IS+    +A +            P  +V+ R+Q +  +  +P++   K      + I++ EG FGL+ G AP  M+
Sbjct:  319 QETLGIHERLVAGSLAGVIAQSSIYPMEVLKTRMALRKTGQYQGMLDCGKKILLKEGVSAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYATSSADPGVFVLLACGTISSTCGQLASY------------PLALVRTRMQAEASVEGAPQMTMSK----LFKHIVKTEGAFGLYRGLAPNFMK 489          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: S2535_DANRE (Solute carrier family 25 member 35 OS=Danio rerio GN=slc25a35 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 56/185 (30.27%), Postives = 91/185 (49.19%), Query Frame = 3
Query:  189 LGGVVE--ACCL-QPIDVIKTRLQLD----TTGTY----KGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPEL---LKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNA 701
            LGGV    AC    P++V+KTR+QL     + GTY    + + H   T+ + +G+  L KGL P   +      +R+GS A+ +S       G++S     ++G  AGV+ A+ + +P  +VK  LQ Q   S  +    K++G  +    I ++ G+ GLW GA+  + R     AA     +A
Sbjct:    5 LGGVAACGACFFTNPLEVVKTRMQLQGELKSRGTYQVYYRNVFHAFYTIGKIDGLAGLQKGLVPGLVYQFFMNGVRLGSYALTESLGYIHTDGRVSATKSTVSGAIAGVVGAV-MGSPIYLVKTHLQSQSTSSIAVGHQYKHRGMTNALFAIHKQHGILGLWRGASAAIPRVSVGSAAQLATFSA 188          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: MCFZ_DICDI (Mitochondrial substrate carrier family protein Z OS=Dictyostelium discoideum GN=mcfZ PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 55/185 (29.73%), Postives = 90/185 (48.65%), Query Frame = 3
Query:  162 PYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDT----TGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSK-TGKISNQ-----GRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            P+ + V+G++ G  +     P+D IKT+LQ +      GT+  I+  G     T GV AL++G+ P       K  +R  + + F   +K +   G+  N+       L+ G  AG +E+  +V P E++K+R   Q     E  K  G +   R ++REEG  GL+ G + T++R  TN    F
Sbjct:   16 PWKRLVAGAVAGTADVWACHPLDRIKTQLQNNPGKSIVGTFGDIVSKGKGF--TGGVNALYEGILPMTAEAIFKVGIRYFAFSWFTEQYKTTVYKGETLNKKQQFGANLLGGAFAGTIESFVVVIPCELLKVRHMTQ-----EHNKSFGTVF--RDVLREEGFQGLYKGGSATLLRQITNHMIRF 191          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: MCATL_BOVIN (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Bos taurus GN=SLC25A29 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 51/163 (31.29%), Postives = 76/163 (46.63%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLDTTGT--YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMR 659
            ++G  GGV       P D +K RLQ+ +     Y+G +HC   + + E V  L++GL      LT    L  G       A      G+ S   + +AG  AG ++ + I  P E+ K RLQ Q   +     Y+GP+ C   I R+EGL G+  G   T++R
Sbjct:    6 LAGCAGGVAGVLVGHPFDTVKVRLQVQSVEKPQYRGTLHCFQAIIKQESVLGLYRGLGSPLLGLTFINALVFGVQGNTLRAL-----GRDSPLNQFLAGAAAGAIQCV-ICCPMELAKTRLQLQE--AGPARTYRGPLDCLAQIYRQEGLRGVNRGMVSTLLR 160          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: ODC_RAT (Mitochondrial 2-oxodicarboxylate carrier OS=Rattus norvegicus GN=Slc25a21 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 56/174 (32.18%), Postives = 87/174 (50.00%), Query Frame = 3
Query:  171 KAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGT----YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRL---MAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREE--GLFGLWAGAAPTVMRNG 665
            +  +G   G+VE C + P+DV+KTR Q+  + T    YK +      + RTEG+   +KG+ P     T K  ++  +  +++        G +S    L   +AG G+G+ EA+ +V PFEVVK+ LQ  R +  E          AR II++E  G  GL  G   T+ R+G
Sbjct:   15 QVAAGGCAGLVEICLMHPLDVVKTRFQVQRSVTDPQSYKSLRDSFQVIFRTEGLFGFYKGIIPPILAETPKRAVKFSTFELYKKFL-----GYMSLSPGLTFPIAGLGSGLTEAV-VVNPFEVVKVGLQVNRNMFTE---QPSTFAYARQIIKKEGWGFQGLNKGFTATLGRHG 179          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: MCFE_DICDI (Mitochondrial substrate carrier family protein E OS=Dictyostelium discoideum GN=mcfE PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 54/200 (27.00%), Postives = 94/200 (47.00%), Query Frame = 3
Query:  108 MDNKREQNPSPVPKKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGT--YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGR---------LMAGFGAGVLEALAIVTPFEVVKIRLQQQRG---LSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNG 665
            M+NK+E +            +  ++G+  G++    + P+D ++ R+Q++  G   YKG  +    + + EGV  L+KG    AT         + ++A++   ++ SK       G+           AGF A  L +L I  P +++K RLQ Q     L+P    YKG  H  ++I++EEG+ GL+ G  P +   G
Sbjct:    1 MENKKESS-----------LLYILTGATSGLLADSIMHPVDTVRARVQIEKVGKSQYKGTFNALNQIIKNEGVSYLYKGFPIVAT-------ATVPAHALYFLGYEYSKQWVTDRYGKKWGESTITHFSAGFVADALGSL-IWVPMDIIKQRLQVQTNTQKLNPNQTYYKGSFHAGKIILQEEGIRGLYRGFMPALATYG 181          
The following BLAST results are available for this feature:
BLAST of FC930403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
UCP1_PHOSU2.044e-1233.33Mitochondrial brown fat uncoupling protein 1 OS=Ph... [more]
ODC_MOUSE2.044e-1232.37Mitochondrial 2-oxodicarboxylate carrier OS=Mus mu... [more]
MCFS_DICDI2.044e-1235.29Mitochondrial substrate carrier family protein S O... [more]
UCP1_MOUSE2.669e-1230.17Mitochondrial brown fat uncoupling protein 1 OS=Mu... [more]
SCMC2_XENTR2.669e-1227.81Calcium-binding mitochondrial carrier protein SCaM... [more]
S2535_DANRE2.669e-1230.27Solute carrier family 25 member 35 OS=Danio rerio ... [more]
MCFZ_DICDI2.669e-1229.73Mitochondrial substrate carrier family protein Z O... [more]
MCATL_BOVIN2.669e-1231.29Mitochondrial carnitine/acylcarnitine carrier prot... [more]
ODC_RAT3.486e-1232.18Mitochondrial 2-oxodicarboxylate carrier OS=Rattus... [more]
MCFE_DICDI3.486e-1227.00Mitochondrial substrate carrier family protein E O... [more]

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Properties
Property NameValue
Genbank descriptionC34007B11EF PostHarvC1 Citrus clementina cDNA clone C34007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930403 ID=FC930403; Name=FC930403; organism=Citrus clementina; type=EST; length=707bp
ATAACAAACACTCAGGAGGGAAGCAAGAAGAAGAGAAGCAATTCCCAGAA
GCACTTCTCTTCTTCTTCTCCAACTTCCCACTGTAAGCTTTTGGACACTT
GTTTTCTATGGATAATAAGCGAGAGCAAAACCCGAGCCCGGTTCCGAAGA
AGACGATCCCACCGTACATGAAAGCGGTGTCGGGTTCTCTCGGAGGGGTC
GTGGAGGCTTGTTGCTTGCAGCCAATCGACGTCATCAAGACGAGGTTACA
GCTGGACACAACTGGGACTTACAAGGGAATTATCCACTGCGGCGCCACCG
TTTCGCGTACCGAAGGCGTGCGGGCTCTGTGGAAAGGATTGACGCCGTTT
GCCACCCACTTGACCTTAAAGTACACGCTTCGAATGGGATCGAATGCCGT
GTTTCAATCGGCGTTTAAGGATTCTAAAACGGGGAAGATTAGCAATCAGG
GTCGGCTAATGGCTGGCTTTGGTGCTGGTGTGCTTGAAGCTCTCGCTATT
GTTACTCCTTTTGAGGTGGTGAAAATTAGACTACAACAGCAGAGAGGTTT
GAGTCCTGAGCTTCTAAAGTACAAGGGTCCTATACACTGTGCTCGTATGA
TCATCCGTGAGGAAGGACTCTTTGGACTCTGGGCAGGGGCTGCCCCAACT
GTTATGCGCAATGGGACAAACCAAGCTGCCATGTTTACGGCTAAAAATGC
TTTTGAT
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