FC930403

Overview
NameFC930403
Unique NameFC930403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: HDMCP_MOUSE (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog OS=Mus musculus GN=Hdmcp PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 61/205 (29.76%), Postives = 93/205 (45.37%), Query Frame = 3
Query:  168 MKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSN-------AVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQ-------QQRGLS-------PELL-----------KYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            M  V+G++GGV       P+D +K R+Q  T   Y GI HC     R E V   ++GL+     ++L  ++  G+          F+    D+K  K       ++G  +G++    + +P EV K+RLQ       QQR  S       P L            KY GP+HC   + REEGL GL+ G++  ++R G + A  F
Sbjct:    1 MDFVAGAIGGVCGVAVGYPLDTVKVRIQ--TEAKYAGIWHCIRDTYRQERVWGFYRGLSLPVCTVSLVSSVSFGTYHHCLAHICRFRYGSTDAKPTKADIT---LSGCASGLVRVF-LTSPTEVAKVRLQTQTQAQTQQRRSSASWTSGAPALCPTPTACLEPRPKYSGPLHCLVTVAREEGLRGLYKGSSALLLREGHSFATYF 199          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP1_DICGR (Mitochondrial brown fat uncoupling protein 1 OS=Dicrostonyx groenlandicus GN=UCP1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 53/171 (30.99%), Postives = 75/171 (43.86%), Query Frame = 3
Query:  168 MKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGT------YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            +K  S  +   +      P+D  K RLQ+   G       YKG++    T+++TEG   L+ GL           +LR+G     Q  F   K    +   R+ AG   G + A+ I  P EVVK+RLQ Q  L     +Y G  +  R+I   E    LW G  P +MRN
Sbjct:   15 VKTFSAGISACLADIITFPLDTAKVRLQIQGEGQTSSTIRYKGVLGTITTLAKTEGWPKLYSGLPAGIQRQISFASLRIGLYDTVQEYFSSGKETPPTLGNRISAGLMTGGV-AVFIGQPTEVVKVRLQAQSHLHGIKPRYTGTYNAYRIIATTESFSTLWKGTTPNLMRN 184          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: SCMC2_RAT (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Rattus norvegicus GN=Slc25a25 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 54/187 (28.88%), Postives = 85/187 (45.45%), Query Frame = 3
Query:  147 KKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTP------------FATHLTLKYT--LRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGL--SPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMR 659
            ++T+  + + V+GSL G +    + P++V+KTR+ L  TG Y G++ C   +   EGV A +KG  P             A + TLK T   R   N+     F     G IS+    +A +            P  +V+ R+Q Q  +  +PE+          + I+R EG FGL+ G AP  M+
Sbjct:  275 QETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTGQYSGMLDCAKRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTISSTCGQLASY------------PLALVRTRMQAQASIEGAPEVTMSS----LFKQILRTEGAFGLYRGLAPNFMK 445          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: SCMC2_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Mus musculus GN=Slc25a25 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 54/187 (28.88%), Postives = 85/187 (45.45%), Query Frame = 3
Query:  147 KKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTP------------FATHLTLKYT--LRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGL--SPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMR 659
            ++T+  + + V+GSL G +    + P++V+KTR+ L  TG Y G++ C   +   EGV A +KG  P             A + TLK T   R   N+     F     G IS+    +A +            P  +V+ R+Q Q  +  +PE+          + I+R EG FGL+ G AP  M+
Sbjct:  275 QETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTGQYSGMLDCARRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTISSTCGQLASY------------PLALVRTRMQAQASIEGAPEVTMSS----LFKQILRTEGAFGLYRGLAPNFMK 445          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: ODC_BOVIN (Mitochondrial 2-oxodicarboxylate carrier OS=Bos taurus GN=SLC25A21 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 59/182 (32.42%), Postives = 88/182 (48.35%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLDTTGT----YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRL---MAGFGAGVLEALAIVTPFEVVKIRLQQQRGL---SPELLKYKGPIHCARMIIREE--GLFGLWAGAAPTVMRNGTNQAAMF 686
            ++G   G+VE C + P+DV+KTR Q+    T    YK +      + RTEG+   +KG+ P     T K  ++  +   ++        G +S    L   +AG G+G+ EA+ +V PFEVVK+ LQ  R      P  + Y      AR II++E  GL GL  G   T+ R+G      F
Sbjct:   18 LAGGSAGLVEICLMHPLDVVKTRFQIQRCTTDPNSYKSLGDSFRMIFRTEGLFGFYKGILPPILAETPKRAVKFFTFEQYKKLL-----GYVSLSPALTFAVAGLGSGLTEAI-VVNPFEVVKVGLQANRNRFTEQPSTMSY------ARHIIKKEGLGLGGLNKGFTATLGRHGVFNMVYF 187          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: MCATL_RAT (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Rattus norvegicus GN=Slc25a29 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 53/163 (32.52%), Postives = 75/163 (46.01%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLDTTGT--YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMR 659
            ++G  GGV       P D +K RLQ+  T    Y+G +HC  ++ + E V  L+KGL      LT    L  G       A      G+ S   + +AG  AG ++ + I  P E+ K RLQ Q   +     YKG + C   I R EGL G+  G   T++R
Sbjct:    6 LAGCAGGVAGVIVGHPFDTVKVRLQVQNTEKPQYRGTLHCFQSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRAL-----GQDSPLNQFLAGAAAGAIQCV-ICCPMELAKTRLQLQA--AGPARAYKGSLDCLVQIYRHEGLRGINRGMVSTLLR 160          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: YKQ9_SCHPO (Uncharacterized mitochondrial carrier C688.09 OS=Schizosaccharomyces pombe GN=SPAC688.09 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 54/185 (29.19%), Postives = 87/185 (47.03%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLDT----TGTYKGIIHCGATVSRTEGVRALWKGLTPFATHL---TLKYTL-RMGSNAVFQSAFKDSKTG-------KISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            ++ ++ GV+ +    PI ++KTRLQLD        Y+  I C     R EG R L+KGL+     +   TL++ L     +AV     +  + G       K+ + G  + G G     A  I  P EVV+ RL+Q   ++    KY G I C +++  E+G+ GL+ G    ++R   N   +F
Sbjct:  167 MAAAIAGVITSAATNPIWLVKTRLQLDKKSGQAAQYRSSIDCIIKTIRLEGFRGLYKGLSASLLGVGESTLQWVLYEKFKHAVAIRQLRRKELGIQETIYDKVLDWGGKLGGAGIAKFMAAGIAYPHEVVRTRLRQSPSINGTP-KYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP1_MESAU (Mitochondrial brown fat uncoupling protein 1 OS=Mesocricetus auratus GN=UCP1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 50/153 (32.68%), Postives = 71/153 (46.41%), Query Frame = 3
Query:  222 PIDVIKTRLQLDTTGT------YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            P+D  K RLQ+   G       YKG++    T+++TEG+  L+ GL           +LR+G     Q  F   K    +   R+ AG   G + A+ I  P EVVK+RLQ Q  L     +Y G  +  R+I   E    LW G  P ++RN
Sbjct:   33 PLDTAKVRLQIQGEGQISSTIRYKGVLGTITTLAKTEGLPKLYSGLPAGIQRQISFASLRIGLYDTVQEYFSSGKETPPTLGNRISAGLMTGGV-AVFIGQPTEVVKVRLQAQSHLHGIKPRYTGTYNAYRIIATTESFSTLWKGTTPNLLRN 184          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 50/187 (26.74%), Postives = 90/187 (48.13%), Query Frame = 3
Query:  147 KKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTP------------FATHLTLK--YTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGL--SPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMR 659
            ++T+  + + V+GSL GV+    + P++V+KTR+ L  TG Y+G++ CG  +   EG+ A +KG  P             A + TLK  +  R  +++     F     G +S+    +A +            P  +V+ R+Q +  +  +P++   K      + I++ EG FGL+ G AP  M+
Sbjct:  320 QETLGIHERFVAGSLAGVIAQSSIYPMEVLKTRMALRKTGQYQGVLDCGKKILLQEGLSAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYATSSADPGVFVLLACGTVSSTCGQLASY------------PLALVRTRMQAEASVEGAPQMTMSK----LFKHIVKTEGAFGLYRGLAPNFMK 490          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP2_PIG (Mitochondrial uncoupling protein 2 OS=Sus scrofa GN=UCP2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 59/184 (32.07%), Postives = 86/184 (46.74%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQ----PIDVIKTRLQLD----------TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGS-NAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            +PP   A    LG    AC       P+D  K RLQ+            +  Y+G++    T+ R EG R+L+ GL           ++R+G  ++V     K S+   I +  RL+AG   G L A+A+  P +VVK+R Q Q        +Y+  +   + I REEGL GLW G +P V RN
Sbjct:    9 VPP--TATVKFLGAGTAACIADLITFPLDTAKVRLQIQGERRGPVQAAASAQYRGVLGTILTMVRNEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKHFYTKGSEHAGIGS--RLLAGSTTGAL-AVAVAQPTDVVKVRFQAQARAGGGR-RYRSTVDAYKTIAREEGLRGLWKGTSPNVARN 186          
The following BLAST results are available for this feature:
BLAST of FC930403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
HDMCP_MOUSE3.486e-1229.76Hepatocellular carcinoma down-regulated mitochondr... [more]
UCP1_DICGR4.553e-1230.99Mitochondrial brown fat uncoupling protein 1 OS=Di... [more]
SCMC2_RAT4.553e-1228.88Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_MOUSE4.553e-1228.88Calcium-binding mitochondrial carrier protein SCaM... [more]
ODC_BOVIN4.553e-1232.42Mitochondrial 2-oxodicarboxylate carrier OS=Bos ta... [more]
MCATL_RAT4.553e-1232.52Mitochondrial carnitine/acylcarnitine carrier prot... [more]
YKQ9_SCHPO5.947e-1229.19Uncharacterized mitochondrial carrier C688.09 OS=S... [more]
UCP1_MESAU5.947e-1232.68Mitochondrial brown fat uncoupling protein 1 OS=Me... [more]
SCMC2_XENLA5.947e-1226.74Calcium-binding mitochondrial carrier protein SCaM... [more]
UCP2_PIG7.767e-1232.07Mitochondrial uncoupling protein 2 OS=Sus scrofa G... [more]

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Properties
Property NameValue
Genbank descriptionC34007B11EF PostHarvC1 Citrus clementina cDNA clone C34007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930403 ID=FC930403; Name=FC930403; organism=Citrus clementina; type=EST; length=707bp
ATAACAAACACTCAGGAGGGAAGCAAGAAGAAGAGAAGCAATTCCCAGAA
GCACTTCTCTTCTTCTTCTCCAACTTCCCACTGTAAGCTTTTGGACACTT
GTTTTCTATGGATAATAAGCGAGAGCAAAACCCGAGCCCGGTTCCGAAGA
AGACGATCCCACCGTACATGAAAGCGGTGTCGGGTTCTCTCGGAGGGGTC
GTGGAGGCTTGTTGCTTGCAGCCAATCGACGTCATCAAGACGAGGTTACA
GCTGGACACAACTGGGACTTACAAGGGAATTATCCACTGCGGCGCCACCG
TTTCGCGTACCGAAGGCGTGCGGGCTCTGTGGAAAGGATTGACGCCGTTT
GCCACCCACTTGACCTTAAAGTACACGCTTCGAATGGGATCGAATGCCGT
GTTTCAATCGGCGTTTAAGGATTCTAAAACGGGGAAGATTAGCAATCAGG
GTCGGCTAATGGCTGGCTTTGGTGCTGGTGTGCTTGAAGCTCTCGCTATT
GTTACTCCTTTTGAGGTGGTGAAAATTAGACTACAACAGCAGAGAGGTTT
GAGTCCTGAGCTTCTAAAGTACAAGGGTCCTATACACTGTGCTCGTATGA
TCATCCGTGAGGAAGGACTCTTTGGACTCTGGGCAGGGGCTGCCCCAACT
GTTATGCGCAATGGGACAAACCAAGCTGCCATGTTTACGGCTAAAAATGC
TTTTGAT
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