FC930403

Overview
NameFC930403
Unique NameFC930403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP1_HUMAN (Mitochondrial brown fat uncoupling protein 1 OS=Homo sapiens GN=UCP1 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 51/153 (33.33%), Postives = 71/153 (46.41%), Query Frame = 3
Query:  222 PIDVIKTRLQLD------TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            P+D  K RLQ+       +   YKG++     V +TEG   L+ GL           +LR+G     Q      K    S   +++AG   G + A+ I  P EVVK+RLQ Q  L     +Y G  +  R+I   EGL GLW G  P +MR+
Sbjct:   33 PLDTAKVRLQVQGECPTSSVIRYKGVLGTITAVVKTEGRMKLYSGLPAGLQRQISSASLRIGLYDTVQEFLTAGKETAPSLGSKILAGLTTGGV-AVFIGQPTEVVKVRLQAQSHLHGIKPRYTGTYNAYRIIATTEGLTGLWKGTTPNLMRS 184          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: S2538_NEOFI (Solute carrier family 25 member 38 homolog OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_103940 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 58/205 (28.29%), Postives = 91/205 (44.39%), Query Frame = 3
Query:  105 SMDNKREQNPSPVPKKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGL-------TPFATHLTLKYTL---RMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFT 689
            S D K   + S +PK  +  +    +G++        + P+ V+K R + D    Y+ +   G  + RTEGVR L+ G         P+A    L Y     R+ S A  + + +  K+   S+   +  G  AG+  A AI  PF+ VK RLQ   G      KY   I   R++IRE+G+  L+ G    + R   + A  +T
Sbjct:  117 SSDGKSRTSSSALPK--LSNWGNLATGAVARTAAGFVMMPVTVLKVRYESDYYA-YRSLYSAGRDIVRTEGVRGLFSGFGATAARDAPYAGLYVLFYEQLKRRLASVASSEQSEQPLKSTSSSSINFVSGGLAAGL--ATAITNPFDAVKTRLQLMPG------KYGNMIRAVRLMIREDGVRSLFGGLGLRITRKALSSALAWT 310          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: M2OM_NEUCR (Putative mitochondrial 2-oxoglutarate/malate carrier protein OS=Neurospora crassa GN=NCU10732 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 60/170 (35.29%), Postives = 80/170 (47.06%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSR----TEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQS---AFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSP--ELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMR 659
            ++G L G+V    +QPID+IK R+QL   G   G       V+R    +     L+ GL+       +  T R+G    F S   A    K   +  + R  AG  AG L A+ I  P ++  IR+Q   GL P  E   YK  I     I R EG+  LWAGAAPTV+R
Sbjct:   46 INGGLSGMVATTVIQPIDMIKVRIQLAGEGKAGGPKPTPLGVTRDIIASGKAMDLYTGLSAGLLRQAVYTTARIGCFDTFMSRLSARAKEKGQSVGFKERASAGLAAGGLAAM-IGNPADLALIRMQSD-GLKPVAERKNYKSVIDALGGIARNEGVAALWAGAAPTVVR 213          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCPA_DICDI (Mitochondrial substrate carrier family protein ucpA OS=Dictyostelium discoideum GN=ucpA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 50/174 (28.74%), Postives = 77/174 (44.25%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLD-----TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGL--SPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQA 677
            +SGSL  +       PI+++KTRLQL      +   Y G+      + +TEG+R L  GL P          +R+GS  +  +A              L+AG  AG + A A  +PF++VK+R+Q        P+ + Y       + II++EG  GL  G   +  R     A
Sbjct:   20 ISGSLASICATTVTNPIELVKTRLQLQGELQLSQRIYNGVWDAFKQIYKTEGIRGLQSGLIPAYFSQATMQGIRLGSFDLISNALGAKPNQDYFFLKNLLAGATAGAIGA-AAGSPFDLVKVRMQAANMYKNDPQFVGYSSSFAAFKQIIQKEGFKGLTRGMLTSAQRTAVGSA 192          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP2_CYPCA (Mitochondrial uncoupling protein 2 OS=Cyprinus carpio GN=ucp2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 60/185 (32.43%), Postives = 86/185 (46.49%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQ----PIDVIKTRLQLD-------TTG----TYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGS-NAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            +PP   A    +G    AC       P+D  K RLQ+         TG     Y+G+    +T+ R EG R+L+ GL           ++R+G  ++V Q   K S+   I +  RLMAG   G + A+A+  P +VVK+R Q Q        +Y G +   R I +EEG  GLW G  P + RN
Sbjct:    9 VPP--TATVKFIGAGTAACIADLFTFPLDTAKVRLQIQGESKIPVNTGHGPVKYRGVFGTISTMVRVEGPRSLYSGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHVGIGS--RLMAGCTTGAM-AVALAQPTDVVKVRFQAQNSAGANK-RYHGTMDAYRTIAKEEGFRGLWKGTGPNITRN 187          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: TPC1_PICGU (Mitochondrial thiamine pyrophosphate carrier 1 OS=Pichia guilliermondii GN=TPC1 PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 55/185 (29.73%), Postives = 83/185 (44.86%), Query Frame = 3
Query:  153 TIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLD--TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTG-----KISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            T   Y   V+GS+ G V      P+D +K RLQL   + G + G+      + + EG+RA WKG  P      L    +  S ++F  A  + +T      + SN   L+ G  AG L +L +  PF++++ RL          L     I   + +    GL GL+ GA PT++  G N   MF
Sbjct:   14 TASVYHTLVAGSVSGAVARAVTAPLDTVKIRLQLSNKSLGAHDGLRQTVVRIFKNEGIRAFWKGNVPAEIMYILYGATQFTSYSMFSKALTELETTYGFNLRPSNHS-LIVGTSAG-LTSLIVTYPFDLLRTRLAANS--ERHFLSMTAVI---KQVRASGGLAGLYMGAKPTLLSLGLNSGLMF 191          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP3_BOVIN (Mitochondrial uncoupling protein 3 OS=Bos taurus GN=UCP3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 50/178 (28.09%), Postives = 77/178 (43.26%), Query Frame = 3
Query:  171 KAVSGSLGGVVEACCLQPIDVIKTRLQ------LDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            + ++G   G +   C QP DV+K R Q      L     Y G +    T++R EGVR LWKG+ P  T   +     M +  + +    D      +     ++ FGAG    L + +P +VVK R       SP   +Y  P  C   ++ +EG    + G  P+ +R G+    MF
Sbjct:  119 RILAGCTTGAMAVTCAQPTDVVKIRFQASMHTGLGGNRKYSGTMDAYRTIAREEGVRGLWKGILPNITRNAIVNCGEMVTYDIIKEKLLDYHLLTDNFPCHFVSAFGAGFCATL-VASPVDVVKTRYMN----SPP-GQYHSPFDCMLKMVTQEGPTAFYKGFTPSFLRLGSWNVVMF 290          

HSP 2 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 50/158 (31.65%), Postives = 73/158 (46.20%), Query Frame = 3
Query:  222 PIDVIKTRLQLD---------TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQ--QQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            P+D  K RLQ+           +  Y+G++    T+ RTEG R+L+ GL           ++R+G     +  +    +   S   R++AG   G + A+    P +VVKIR Q     GL     KY G +   R I REEG+ GLW G  P + RN
Sbjct:   33 PLDTAKVRLQIQGENQAALAARSAQYRGVLGTILTMVRTEGPRSLYSGLVAGLQRQMSFASIRIGLYDSVKQFYTPKGSDHSSIITRILAGCTTGAM-AVTCAQPTDVVKIRFQASMHTGLGGNR-KYSGTMDAYRTIAREEGVRGLWKGILPNITRN 188          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP1_BOVIN (Mitochondrial brown fat uncoupling protein 1 (Fragment) OS=Bos taurus GN=UCP1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 50/153 (32.68%), Postives = 73/153 (47.71%), Query Frame = 3
Query:  222 PIDVIKTRLQLD------TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            P+D  K RLQ+       +   YKG++    T+++TEG   L+ GL           +LR+G     Q  F   K   + +  ++ AG   G + A+ I  P EVVK+RLQ Q  L     +Y G  +  R+I   EGL GLW G +P +  N
Sbjct:   17 PLDTAKVRLQIQGECLISSAIRYKGVLGTIITLAKTEGPVKLYSGLPAGLQRQISLASLRIGLYDTVQEFFTTGKEASLGS--KISAGLMTGGV-AVFIGQPTEVVKVRLQAQSHLHGPKPRYTGTYNAYRIIATTEGLTGLWKGTSPNLTTN 166          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: TPC_PONAB (Mitochondrial thiamine pyrophosphate carrier OS=Pongo abelii GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 46/179 (25.70%), Postives = 84/179 (46.93%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLD-TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFK---DSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQ-----QQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            V G L   +    + P+DV++TR         Y  + H   T+ R+EG +  +KGL P    +     L+    +  +  +K    ++  K  N   L+ G GAGV+    +  P ++ K RLQ       R    ++ +YKG + CA+ ++++EG  G + G +P++++   +   MF
Sbjct:  123 VCGGLAACMATLTVHPVDVLRTRFAAQGEPKVYNTLCHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISK-TLTYPLDLFKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFMF 300          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: GHC1_PONAB (Mitochondrial glutamate carrier 1 OS=Pongo abelii GN=SLC25A22 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 52/190 (27.37%), Postives = 89/190 (46.84%), Query Frame = 3
Query:  171 KAVSGSLGGVVEACCLQPIDVIKTRLQLDTTG--TYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTG-KISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQ-------------------QRGLSPELLKYKGP----IHCARMIIREEGLFGLWAGAAPTVMRN 662
            K ++G + G++   C+ PID+ KTRLQ    G   Y  +  C     R+EG   +++G     T +T +  +++ +N  F+     SK G K++    ++AG GAG  + + + TP E++KI+LQ                    Q G  P +     P    I   R ++R  G+ GL+ G   T++R+
Sbjct:   11 KLINGGIAGLIGVTCVFPIDLAKTRLQNQQNGQRMYTSMSDCLIKTIRSEGYFGMYRGAAVNLTLVTPEKAIKLAANDFFRHQL--SKDGQKLTLLKEMLAGCGAGTCQVI-VTTPMEMLKIQLQDAGRIAAQRKILAAQGQLSAQGGAQPSVEAPAAPRPTAIQLTRDLLRSRGIAGLYKGLGATLLRD 197          
The following BLAST results are available for this feature:
BLAST of FC930403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
UCP1_HUMAN7.767e-1233.33Mitochondrial brown fat uncoupling protein 1 OS=Ho... [more]
S2538_NEOFI7.767e-1228.29Solute carrier family 25 member 38 homolog OS=Neos... [more]
M2OM_NEUCR7.767e-1235.29Putative mitochondrial 2-oxoglutarate/malate carri... [more]
UCPA_DICDI1.014e-1128.74Mitochondrial substrate carrier family protein ucp... [more]
UCP2_CYPCA1.014e-1132.43Mitochondrial uncoupling protein 2 OS=Cyprinus car... [more]
TPC1_PICGU1.014e-1129.73Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
UCP3_BOVIN1.325e-1128.09Mitochondrial uncoupling protein 3 OS=Bos taurus G... [more]
UCP1_BOVIN1.325e-1132.68Mitochondrial brown fat uncoupling protein 1 (Frag... [more]
TPC_PONAB1.325e-1125.70Mitochondrial thiamine pyrophosphate carrier OS=Po... [more]
GHC1_PONAB1.325e-1127.37Mitochondrial glutamate carrier 1 OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionC34007B11EF PostHarvC1 Citrus clementina cDNA clone C34007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930403 ID=FC930403; Name=FC930403; organism=Citrus clementina; type=EST; length=707bp
ATAACAAACACTCAGGAGGGAAGCAAGAAGAAGAGAAGCAATTCCCAGAA
GCACTTCTCTTCTTCTTCTCCAACTTCCCACTGTAAGCTTTTGGACACTT
GTTTTCTATGGATAATAAGCGAGAGCAAAACCCGAGCCCGGTTCCGAAGA
AGACGATCCCACCGTACATGAAAGCGGTGTCGGGTTCTCTCGGAGGGGTC
GTGGAGGCTTGTTGCTTGCAGCCAATCGACGTCATCAAGACGAGGTTACA
GCTGGACACAACTGGGACTTACAAGGGAATTATCCACTGCGGCGCCACCG
TTTCGCGTACCGAAGGCGTGCGGGCTCTGTGGAAAGGATTGACGCCGTTT
GCCACCCACTTGACCTTAAAGTACACGCTTCGAATGGGATCGAATGCCGT
GTTTCAATCGGCGTTTAAGGATTCTAAAACGGGGAAGATTAGCAATCAGG
GTCGGCTAATGGCTGGCTTTGGTGCTGGTGTGCTTGAAGCTCTCGCTATT
GTTACTCCTTTTGAGGTGGTGAAAATTAGACTACAACAGCAGAGAGGTTT
GAGTCCTGAGCTTCTAAAGTACAAGGGTCCTATACACTGTGCTCGTATGA
TCATCCGTGAGGAAGGACTCTTTGGACTCTGGGCAGGGGCTGCCCCAACT
GTTATGCGCAATGGGACAAACCAAGCTGCCATGTTTACGGCTAAAAATGC
TTTTGAT
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