FC930403

Overview
NameFC930403
Unique NameFC930403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: TPC_HUMAN (Mitochondrial thiamine pyrophosphate carrier OS=Homo sapiens GN=SLC25A19 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 47/185 (25.41%), Postives = 86/185 (46.49%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLD-TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFK---DSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQ-----QQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAF 704
            V G L   +    + P+DV++TR         Y  + H   T+ R+EG +  +KGL P    +     L+    +  +  +K    ++  K  N   L+ G GAGV+    +  P ++ K RLQ       R    ++ +YKG + CA+ ++++EG  G + G +P++++   +   MF +   F
Sbjct:  123 VCGGLAACMATLTVHPVDVLRTRFAAQGEPKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISK-TLTYPLDLFKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFMFFSYEFF 306          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: SCMC3_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Mus musculus GN=Slc25a23 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 46/176 (26.14%), Postives = 85/176 (48.30%), Query Frame = 3
Query:  147 KKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALA---IVTPFEVVKIRLQQQRGL--SPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMR 659
            ++T+    + V+GSL G      + P++V+KTRL L  TG YKG++ C   +   EG RA ++G  P    +     + +      ++ +    + + +N G L+   G G + +        P  +V+ R+Q Q  +   P++      +   R I+ +EG++GL+ G AP  M+
Sbjct:  273 QETLHVQERFVAGSLAGATAQTIIYPMEVLKTRLTLRRTGQYKGLLDCAKRILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLKNRWLQQYSHESANPGILVL-LGCGTISSTCGQIASYPLALVRTRMQAQASIEGGPQV----SMVGLLRHILSQEGVWGLYRGIAPNFMK 443          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: MCFL_DICDI (Mitochondrial substrate carrier family protein L OS=Dictyostelium discoideum GN=mcfL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 49/169 (28.99%), Postives = 80/169 (47.34%), Query Frame = 3
Query:  147 KKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLD-TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPT 650
            K+T       + G   G        P D +K RLQ + +TG ++G+ HC  T  + EG  AL+KG+TP    +++  +   G+  + +S     K+  IS    +++G   G + +  +  P E VK +LQ Q      +  Y GPI C    I++ G+ GL+    PT
Sbjct:    5 KETKEKIRNFIGGFASGAASTLAGHPFDTLKVRLQTEGSTGRFRGLAHCFTTTIKEEGFFALYKGVTPPLLGMSIINSCMFGAMNIVKSKIHTDKSTPISLGEIMVSGAITGWIVSF-VACPIETVKSKLQVQ---YTGVKLYNGPIDC----IKKIGIRGLYKALIPT 165          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: YETC_SCHPO (Uncharacterized mitochondrial carrier C8C9.12c OS=Schizosaccharomyces pombe GN=SPAC8C9.12c PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 49/163 (30.06%), Postives = 84/163 (51.53%), Query Frame = 3
Query:  159 PPYMKAVSGSLGGVVEACCLQPIDVIKTRLQL---DTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMG---SNAVFQSAFKDSKTGKISNQGRLMAGFGAG---VLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGL 620
            P Y   ++G+  G++E   + P+D IKTR+Q+    +      I++    +S TEGV +LW+G++          ++ MG   S+A++ S  +  K+   ++  R +A   AG   +  + A +TPF+V+K R+Q          KYK  +HCA  + R EGL
Sbjct:   18 PMYAHLLAGAFSGILEHSVMYPVDAIKTRMQMLNGVSRSVSGNIVNSVIKISSTEGVYSLWRGIS----------SVIMGAGPSHAIYFSVLEFFKSKINASPDRPLASALAGACAITISDAFMTPFDVIKQRMQLPS------RKYKSALHCATTVFRNEGL 164          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP3_HUMAN (Mitochondrial uncoupling protein 3 OS=Homo sapiens GN=UCP3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 55/184 (29.89%), Postives = 78/184 (42.39%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQ----PIDVIKTRLQLDTTGT---------YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELL--KYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            +PP M      LG    AC       P+D  K RLQ+              Y+G++    T+ RTEG  + + GL           ++R+G     +  +        S   R++AG   G + A+    P +VVK+R Q    L P     KY G +   R I REEG+ GLW G  P +MRN
Sbjct:    9 VPPTMAVKF--LGAGTAACFADLVTFPLDTAKVRLQIQGENQAVQTARLVQYRGVLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQVYTPKGADNSSLTTRILAGCTTGAM-AVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTMDAYRTIAREEGVRGLWKGTLPNIMRN 189          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: S2543_DANRE (Solute carrier family 25 member 43 OS=Danio rerio GN=slc25a43 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 48/177 (27.12%), Postives = 87/177 (49.15%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQPIDVIKTRL--QLDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVF---QSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPEL----LKYKGPIHCARMIIREEGLFGLWAGAAPTVMR 659
            I  +   V+G L G+  A    P++V++TRL  Q     TY+G++H  + + R EG++AL++G   F+  +       +G  AV+      +++      S Q  +     AGV + L+   PFE VK ++Q Q  + P      + + G   C R +I+ +G+  LW+G    +++
Sbjct:  103 ISQWRAIVAGGLAGISAALATYPLEVVETRLIAQNCQEPTYRGLLHSLSVIYRNEGLQALYRG---FSLTVLGAVPFSVGCYAVYINLDKLWQERHVRFTSLQNFINGCLAAGVAQTLSF--PFETVKKKMQAQSLVLPHCGGVDVHFNGMADCFRQVIKNKGVMALWSGLTANMVK 274          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: MCAT_ARATH (Mitochondrial carnitine/acylcarnitine carrier-like protein OS=Arabidopsis thaliana GN=BOU PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 63/194 (32.47%), Postives = 86/194 (44.33%), Query Frame = 3
Query:  180 SGSLGGVVEACCLQPIDVIKTRLQLDTTGT------YKGIIHCGATVSRTEGVRALWKGL-TPFATHLTLK---YTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLS--------PELLKYKGPIHCARMIIREE-GLFGLWAGAAPTVMRNGTNQAAMFTAKNAF 704
            SG++GG  +     P D IK +LQ   T        Y G I        +EG + L+KG+  P AT        +T+R     + +S      T  IS Q   +AG GAG   +  +  P E++K RLQ Q  L+           +KY GP+  AR ++R E G  GL+ G  PT  R     A MF A  AF
Sbjct:   10 SGTVGGAAQLVVGHPFDTIKVKLQSQPTPAPGQLPRYTGAIDAVKQTVASEGTKGLYKGMGAPLATVAAFNAVLFTVRGQMEGLLRSEAGVPLT--ISQQ--FVAGAGAGFAVSF-LACPTELIKCRLQAQGALAGASTTSSVVAAVKYGGPMDVARHVLRSEGGARGLFKGLFPTFAREVPGNATMFAAYEAF 198          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP3_CANFA (Mitochondrial uncoupling protein 3 OS=Canis familiaris GN=UCP3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 60/201 (29.85%), Postives = 85/201 (42.29%), Query Frame = 3
Query:  132 PSPVPKKTIPPYMKAVSGSLGGVVEACCLQ----PIDVIKTRLQLDTTGT---------YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSP-ELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNG-TNQAAMFT 689
            PS VP  T   +       LG    AC       P+D  K RLQ+              Y+G++    T+ RTEG R+ + GL           ++R+G     +  +    +   S   R++AG   G + A++   P +VVK+R Q    L      KY G +   R I REEG+ GLW G  P + RN   N A M T
Sbjct:    6 PSEVPPTTAVKF-------LGAGTAACFADLLTFPLDTAKVRLQIQGENQATQAARRIQYRGVLGTILTMVRTEGPRSPYNGLVAGLQRQMSFASIRIGLYDSVKQFYTPKGSDHSSITTRILAGCTTGAM-AVSCAQPTDVVKVRFQASIHLGAGSNRKYSGTMDAYRTIAREEGVRGLWKGTLPNITRNAIVNCAEMVT 198          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: TPC_MACFA (Mitochondrial thiamine pyrophosphate carrier OS=Macaca fascicularis GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 46/179 (25.70%), Postives = 83/179 (46.37%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLD-TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFK---DSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQ-----QQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            V G L        + P+DV++TR         Y  + H   T+ R+EG +  +KGL P    +     L+    +  +  +K    ++  K  N   L+ G GAGV+    +  P ++ K RLQ       R    ++ +YKG + CA+ ++++EG  G + G +P++++   +   MF
Sbjct:  123 VCGGLAACTATLTVHPVDVLRTRFAAQGEPKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAMPAEGKKNENLQNLLCGSGAGVISK-TLTYPLDLFKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFMF 300          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: SCMC2_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Bos taurus GN=SLC25A25 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 51/187 (27.27%), Postives = 85/187 (45.45%), Query Frame = 3
Query:  147 KKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTP------------FATHLTLK--YTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGL--SPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMR 659
            ++T+  + + V+GSL G +    + P++V+KTR+ L  TG Y G++ C   +   EG+ A +KG  P             A + TLK  +  R   N+     F     G +S+    +A +            P  +V+ R+Q Q  +  +PE+          + I+R EG FGL+ G AP  M+
Sbjct:  275 QETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTGQYSGMLDCARKILAREGMAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYAVNSADPGVFVLLACGTMSSTCGQLASY------------PLALVRTRMQAQASMEGAPEVTMSS----LFKQILRTEGAFGLYRGLAPNFMK 445          
The following BLAST results are available for this feature:
BLAST of FC930403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
TPC_HUMAN1.730e-1125.41Mitochondrial thiamine pyrophosphate carrier OS=Ho... [more]
SCMC3_MOUSE1.730e-1126.14Calcium-binding mitochondrial carrier protein SCaM... [more]
MCFL_DICDI1.730e-1128.99Mitochondrial substrate carrier family protein L O... [more]
YETC_SCHPO2.260e-1130.06Uncharacterized mitochondrial carrier C8C9.12c OS=... [more]
UCP3_HUMAN2.260e-1129.89Mitochondrial uncoupling protein 3 OS=Homo sapiens... [more]
S2543_DANRE2.260e-1127.12Solute carrier family 25 member 43 OS=Danio rerio ... [more]
MCAT_ARATH2.260e-1132.47Mitochondrial carnitine/acylcarnitine carrier-like... [more]
UCP3_CANFA2.951e-1129.85Mitochondrial uncoupling protein 3 OS=Canis famili... [more]
TPC_MACFA2.951e-1125.70Mitochondrial thiamine pyrophosphate carrier OS=Ma... [more]
SCMC2_BOVIN2.951e-1127.27Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionC34007B11EF PostHarvC1 Citrus clementina cDNA clone C34007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930403 ID=FC930403; Name=FC930403; organism=Citrus clementina; type=EST; length=707bp
ATAACAAACACTCAGGAGGGAAGCAAGAAGAAGAGAAGCAATTCCCAGAA
GCACTTCTCTTCTTCTTCTCCAACTTCCCACTGTAAGCTTTTGGACACTT
GTTTTCTATGGATAATAAGCGAGAGCAAAACCCGAGCCCGGTTCCGAAGA
AGACGATCCCACCGTACATGAAAGCGGTGTCGGGTTCTCTCGGAGGGGTC
GTGGAGGCTTGTTGCTTGCAGCCAATCGACGTCATCAAGACGAGGTTACA
GCTGGACACAACTGGGACTTACAAGGGAATTATCCACTGCGGCGCCACCG
TTTCGCGTACCGAAGGCGTGCGGGCTCTGTGGAAAGGATTGACGCCGTTT
GCCACCCACTTGACCTTAAAGTACACGCTTCGAATGGGATCGAATGCCGT
GTTTCAATCGGCGTTTAAGGATTCTAAAACGGGGAAGATTAGCAATCAGG
GTCGGCTAATGGCTGGCTTTGGTGCTGGTGTGCTTGAAGCTCTCGCTATT
GTTACTCCTTTTGAGGTGGTGAAAATTAGACTACAACAGCAGAGAGGTTT
GAGTCCTGAGCTTCTAAAGTACAAGGGTCCTATACACTGTGCTCGTATGA
TCATCCGTGAGGAAGGACTCTTTGGACTCTGGGCAGGGGCTGCCCCAACT
GTTATGCGCAATGGGACAAACCAAGCTGCCATGTTTACGGCTAAAAATGC
TTTTGAT
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