FC930405

Overview
NameFC930405
Unique NameFC930405
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: ERF3_CANMA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 6.088e-47
Identity = 87/200 (43.50%), Postives = 131/200 (65.50%), Query Frame = 3
Query:  105 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIER 704
            K H++I+ +GHVD+GKST  G+++Y  G +DKR +E++E+EA +  ++ +  +WV+D  K ER  G TI++    FET K   T++DAPGH+ ++  MI G SQAD  +L+I +  G +E G  K GQTREHALLA T GV ++I   NKMD  T  +SK RY E   ++  +LK +GYN + +  +P+SG+ G  + +R
Sbjct:  287 KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVEKYEREAKDAGRQGWYLSWVMDTNKEERNDGKTIEVGKAYFETDKRRYTILDAPGHKMYVSEMIGGASQADVGILVISARKGEYETGFEKGGQTREHALLAKTQGVNKIIVVVNKMDDPTVNWSKERYQECTTKLGVFLKGIGYNKDDIINMPVSGYTGAGLKDR 486          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: HBS1_YEAST (Elongation factor 1 alpha-like protein OS=Saccharomyces cerevisiae GN=HBS1 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.356e-46
Identity = 86/195 (44.10%), Postives = 130/195 (66.67%), Query Frame = 3
Query:  111 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNM 695
            H++ VV+GHVD+GKST  G L+Y L  +++  + + ++E+  M K SFK+AW++D+   ERERG+T+ I    F T +   T++DAPGHRDF+ N I G SQAD A+L +D +T  FE+G   DGQT+EH LLA +LG+  +I   NKMD     +S+ R++EI  ++  YL  +G+  + + +VPISGF G+ +
Sbjct:  167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD--NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGV 359          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.356e-46
Identity = 96/209 (45.93%), Postives = 135/209 (64.59%), Query Frame = 3
Query:   93 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEK-VPFVPISGFEGDNMIERSTNL 716
            M +EK HIN+V IGHVD GKSTT G L Y LG I +  +E+  +EA +  K  F +A+++D+ K ER RG+TIDIA  + ET   Y T++DAPGH+DF+KNMITG SQAD AVL++ +  G  E       QT+EHA+LA T G+ Q+I   NKMD     Y + R++E+  +V   LK +GY  E  +  +P + F GDN++++S  +
Sbjct:    1 MPREKPHINVVFIGHVDHGKSTTVGRLKYDLGLIPESELEKIREEAKKYGKEEFVFAYLMDRQKEERARGVTIDIAHTELETPHNYITIVDAPGHKDFVKNMITGASQADAAVLVVAADDGVQE-------QTQEHAVLARTFGINQIIVYINKMDKV--NYDQKRFEEVKNQVLKLLKMIGYKDENIIAVIPGASFHGDNVVKKSDKM 200          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.771e-46
Identity = 90/202 (44.55%), Postives = 135/202 (66.83%), Query Frame = 3
Query:  105 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV-GYNPE-KVPFVPISGFEGDNMIER 704
            K H+NIV IGHVD+GKST  G++++  G +DKR +E+ E+EA E  K S+  +W LD    ERE+G T+++    FET     +++DAPGH+ ++ NMI G SQAD  VL+I +  G FEAG  + GQTREHA+LA T G+  ++   NKMD  + ++S+ RY E V ++S +L++V GYN +  V ++P+S + G N+ +R
Sbjct:  236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 437          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.154e-46
Identity = 95/207 (45.89%), Postives = 129/207 (62.32%), Query Frame = 3
Query:   93 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTN 713
            M KEK H+N+  IGHVD GKST  GHL+ + G I ++ +   E           K+ +V+D+L  ERERG+TID+A  KFET KY  T++D PGHRDF+KNMITG SQAD AVL++    G          QT+EH  L+ TLG+ Q+I   NKMD     Y + +++ +  EV++ +K VGY P  V F+P+S FEGDN+  +S N
Sbjct:    1 MAKEKEHMNLAFIGHVDHGKSTLVGHLLLQAGAIAEQQLAEGED----------KFRFVMDRLSEERERGVTIDLAHAKFETDKYEFTIVDCPGHRDFVKNMITGASQADAAVLVVAVDDGVMP-------QTKEHVFLSRTLGINQLIVAINKMDLV--NYDEEKFNALKDEVAALIKTVGYKPSDVEFIPLSAFEGDNITSKSEN 188          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: ERF3_DEBHA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Debaryomyces hansenii GN=SUP35 PE=3 SV=4)

HSP 1 Score: 183.341 bits (464), Expect = 1.148e-45
Identity = 83/200 (41.50%), Postives = 133/200 (66.50%), Query Frame = 3
Query:  105 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIER 704
            K H++I+ +GHVD+GKST  G+++Y  G +DKR ++++E+EA +  ++ +  +WV+D  K ER  G TI++    FET K   T++DAPGH+ ++  MI G SQAD  +L+I +  G +E G  K GQTREHALLA T GV ++I   NKMD  T  +++ RY + + ++ ++LK +GY  + + F+P+SG+ G  + +R
Sbjct:  276 KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVDKYEREAKDAGRQGWYLSWVMDTNKEERSDGKTIEVGKAYFETEKRRYTILDAPGHKMYVSEMIGGASQADVGILVISARKGEYETGFEKGGQTREHALLAKTQGVNKIIVVVNKMDDPTVGWAEDRYKDCITKLGTFLKGIGYAKDDIIFMPVSGYTGAGIKDR 475          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: HBS1_SCHPO (Elongation factor 1 alpha-like protein OS=Schizosaccharomyces pombe GN=hbs1 PE=2 SV=4)

HSP 1 Score: 182.956 bits (463), Expect = 1.500e-45
Identity = 93/204 (45.59%), Postives = 132/204 (64.71%), Query Frame = 3
Query:  105 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYNPEKVPFVPISGFEGDNMIERSTN 713
            K  +++VV GHVDSGKST  G ++++LG I+ R +++   EAA   K SF YAW+LD  + ER RG+T+D+A   FE+ K    + DAPGHRDFI  MI G S AD AVL++DS+   FE G  ++GQTREHA L   LG+ +++   NK+D  +  +S+ R+ EI   VS +L K VG+    V FVPIS   G N+I++ ++
Sbjct:  175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSS 376          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: ERF3_DICDI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Dictyostelium discoideum GN=erf3 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.363e-45
Identity = 90/199 (45.23%), Postives = 136/199 (68.34%), Query Frame = 3
Query:  105 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEK-VPFVPISGFEGDNMI 698
            + H+NIV +GHVD+GKST +G ++   G +D   + ++E+EA E ++  + YA+++D  + ER +G T+++    FETTK   T++DAPGHR ++ NMI G +QAD  +L+I S  G FEAG+ + GQT EHA LA  +G+K ++   NKMD  T K+SKARYDEI  +++ +LKK G+NP+K   FVP SG+   N++
Sbjct:  115 REHLNIVFLGHVDAGKSTLSGSIMVLTGQVDPHTLAKYEREAKENHREGWIYAYIMDTNEEERTKGKTVEVGRAHFETTKKRYTILDAPGHRLYVPNMIIGAAQADVGILVISSKKGEFEAGV-EGGQTIEHARLAKMIGIKYLVVFVNKMDEPTVKWSKARYDEITDKLTVHLKKCGWNPKKDFHFVPGSGYGTLNVL 312          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EF1A_ENCCU (Elongation factor 1-alpha OS=Encephalitozoon cuniculi GN=TEF1 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.520e-41
Identity = 84/200 (42.00%), Postives = 127/200 (63.50%), Query Frame = 3
Query:  105 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIER 704
            K  +N   IGHVDSGKSTT G L Y+LG +DKR +E++EKEAA  NK +F  A++ DK  AER+RGITI   L    T K+   ++D PGH+DF+KNM+TG SQAD AV+I+ ++  GFE+ +   G  + H +++  LG +++I C NKMD         +++E+  E+   +K+  +  +    +PIS F+G N+ ++
Sbjct:   44 KPRLNACFIGHVDSGKSTTVGMLSYQLGAVDKREMEKYEKEAALNNKETFYLAYLTDKTDAERKRGITITTTLVNLPTEKFNINILDCPGHKDFVKNMVTGASQADVAVVIVPAS--GFESCVGVGGMLKTHIMISGILGCEKLIVCVNKMDEIPENKRMEKFNEVSAEMLRIVKR-SHKDKNPIIIPISAFKGINLTKK 240          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.373e-37
Identity = 77/105 (73.33%), Postives = 88/105 (83.81%), Query Frame = 3
Query:  405 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP-KYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL 716
            GTSQAD A+L++ +  GGFE   SK+GQTREHALLAFTLGVKQMI   NKMDATTP KYS+ R++EI  EVS YLK VGYNPEKVPFVPISGF GDNM+ERS+N+
Sbjct:    1 GTSQADVALLVVPADQGGFEGAFSKEGQTREHALLAFTLGVKQMIVGINKMDATTPDKYSETRFNEIQAEVSRYLKTVGYNPEKVPFVPISGFMGDNMVERSSNM 105          
The following BLAST results are available for this feature:
BLAST of FC930405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ERF3_CANMA6.088e-4743.50Eukaryotic peptide chain release factor GTP-bindin... [more]
HBS1_YEAST1.356e-4644.10Elongation factor 1 alpha-like protein OS=Saccharo... [more]
EF1A_NANEQ1.356e-4645.93Elongation factor 1-alpha OS=Nanoarchaeum equitans... [more]
ERF3_SCHPO1.771e-4644.55Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_METTH5.154e-4645.89Elongation factor 1-alpha OS=Methanobacterium ther... [more]
ERF3_DEBHA1.148e-4541.50Eukaryotic peptide chain release factor GTP-bindin... [more]
HBS1_SCHPO1.500e-4545.59Elongation factor 1 alpha-like protein OS=Schizosa... [more]
ERF3_DICDI4.363e-4545.23Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_ENCCU6.520e-4142.00Elongation factor 1-alpha OS=Encephalitozoon cunic... [more]
EF1A_EIMBO4.373e-3773.33Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]

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Properties
Property NameValue
Genbank descriptionC34007C01EF PostHarvC1 Citrus clementina cDNA clone C34007C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930405 ID=FC930405; Name=FC930405; organism=Citrus clementina; type=EST; length=737bp
GATTTTCGCTACACGCTCTCAGTTTCTGCAAGTCGGCGAGAGAGAAACCT
TTTAGCAAATTTCATATCAAGGTTTTATACTAGATTTGCATAATGGGTAA
GGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAA
AGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAG
CGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTC
ATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTG
GTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTAC
TGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGAT
TACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCA
CCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCAT
GCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAA
CAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAA
TTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAG
AAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGA
GAGGTCTACCAACCTGACTGGTACAGGGGTCCACCCT
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