FC930405

Overview
NameFC930405
Unique NameFC930405
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EFTU_MYCLB (Elongation factor Tu OS=Mycobacterium leprae (strain Br4923) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 76/211 (36.02%), Postives = 110/211 (52.13%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGD-NMIERSTNL 716
            + K H+NI  IGHVD GK+T T         I K + ++F      +N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD   +E  T L
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFPN----LNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGDAKWVESVTQL 193          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EFTU_MYCHP (Elongation factor Tu OS=Mycoplasma hominis (strain ATCC 23114 / IFO 14850 / NCTC 10111 / PG21) GN=tuf PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 66/205 (32.20%), Postives = 103/205 (50.24%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIER 704
            + K H+NI  IGHVD GK+T T  +   L           +K  AE       YA + D    E+ RGITI+ +  +++T K +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK+D       +     +  +V S L + G++ +  P +    +   +GD   E+
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIATVLA----------KKGLAEARD----YASI-DNAPEEKARGITINTSHIEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVPKIVVFLNKIDMFKDDEREEMVGLVEMDVRSLLSEYGFDGDNAPIIAGSALKALQGDPEYEK 190          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EFTU_LEUMM (Elongation factor Tu OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 67/200 (33.50%), Postives = 101/200 (50.50%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD 689
            + K H+NI  IGHVD GK+T T         I K + E+   +A +  +        +D    E+ERGITI+ +  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  +  + +P +    +   EGD
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AISKVLAEKQGVDATDFAE--------IDNAPEEKERGITINTSHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYLVVFLNKTDLVD---DEELVELVEMEVRELLSEYDFPGDDIPVLKGSALKALEGD 182          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EFTU_LACPL (Elongation factor Tu OS=Lactobacillus plantarum GN=tuf PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 71/202 (35.15%), Postives = 100/202 (49.50%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLG--GIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD 689
            + K H+NI  IGHVD GK+T T  +   L   G+ K      E++ A            +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  +  + +P +    +   EGD
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITKVLASKGLAK------EQDFAS-----------IDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYIVVFLNKTDLVD---DDELVDLVEMEVRELLSEYDFPGDDIPVIRGSALKALEGD 182          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EFTU_KINRD (Elongation factor Tu OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 69/200 (34.50%), Postives = 102/200 (51.00%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGD 689
            + K H+NI  IGH+D GK+T T         I + + ++F     E+NK S      +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH +LA  +GV  ++   NK D       +   + +  EV   L    +  + VP V +S     EGD
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITRVLHDKFP----ELNKASAFDQ--IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVILARQVGVPYIVVALNKADMVE---DEELLELVEMEVRELLSSYEFPGDDVPVVRVSALKALEGD 184          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EFTU_GEOUR (Elongation factor Tu OS=Geobacter uraniireducens (strain Rf4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 64/200 (32.00%), Postives = 96/200 (48.00%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD 689
            + K H+NI  IGHVD GK+T T  +   L G  +   + F++               +D    ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P +    +   EGD
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITKVLAGKGQAEFKAFDQ---------------IDNAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMVD---DEELLELVELEIRELLSSYDFPGDDIPIIKGSALKALEGD 182          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EFTU_CYAME (Elongation factor Tu, chloroplastic OS=Cyanidioschyzon merolae GN=tufA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 64/190 (33.68%), Postives = 95/190 (50.00%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 665
            + K H+NI  IGHVD GK+T T  +   L   D  V +++FE+               +D    ER RGITI+ +  +++T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L K  +  + +PFV
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAISAVLASKDNTVQLKKFEE---------------IDSAPEERARGITINTSHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPSIVVFLNKADMVD---DPELLELVELEVRELLSKYDFPGDTIPFV 172          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EFTU2_STRRA (Elongation factor Tu-2 OS=Streptomyces ramocissimus GN=tuf2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 71/206 (34.47%), Postives = 102/206 (49.51%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERS 707
            + K H+NI  IGH+D GK+T T         I K + +RF       +   F     +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D       +   + +  EV   L +  +  + VP V +S     EGD    RS
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITKVLHDRFP------DLNPFTPFDQIDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKTDMVD---DEEILELVELEVRELLTEYEFPGDDVPVVKVSALRALEGDPRWTRS 190          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: NODQ_AZOBR (Bifunctional enzyme nodQ OS=Azospirillum brasilense GN=nodQ PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.494e-21
Identity = 62/200 (31.00%), Postives = 104/200 (52.00%), Query Frame = 3
Query:  114 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS--FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERS 707
            +  +  G VD GKST  G L++  G I    +E+  +++    +      ++ ++D L+AERE+ ITID+A   F T +    V DAPGH  + +NM T  S A  AVL++D+  G          QTR HA++A  +G++ ++   NKMD    +  +  +  I +  + +   +G+    V  +P+S   GDN++ RS
Sbjct:   10 LRFLTCGSVDDGKSTLIGRLLHDAGLISDDQLEQARRDSRGRAEEDGGIDFSLLVDGLEAEREQSITIDVAYRYFATDRRSFIVADAPGHEQYTRNMATAASGASLAVLLVDARKGLLT-------QTRRHAIVASLMGIRHVVLAVNKMDLV--EDGETVFAAIRQAFTVFSAPLGF--RSVTAIPLSARHGDNVVHRS 198          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EFTU_SYNS9 (Elongation factor Tu OS=Synechococcus sp. (strain CC9902) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.494e-21
Identity = 61/195 (31.28%), Postives = 95/195 (48.72%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFE 683
            + K H+NI  IGHVD GK+T T  +   L    +  ++ +                 +D    ERERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L+  +T G          QT+EH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P + +SG +
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTAAITNVLAKKGQAQVQNYAD---------------IDGAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPM-------AQTKEHILLAKQVGVPALVVALNKCDMVD---DEEIIELVEMEIRELLSSYDFPGDDIPVIQVSGLK 177          
The following BLAST results are available for this feature:
BLAST of FC930405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MYCLB5.738e-2136.02Elongation factor Tu OS=Mycobacterium leprae (stra... [more]
EFTU_MYCHP5.738e-2132.20Elongation factor Tu OS=Mycoplasma hominis (strain... [more]
EFTU_LEUMM5.738e-2133.50Elongation factor Tu OS=Leuconostoc mesenteroides ... [more]
EFTU_LACPL5.738e-2135.15Elongation factor Tu OS=Lactobacillus plantarum GN... [more]
EFTU_KINRD5.738e-2134.50Elongation factor Tu OS=Kineococcus radiotolerans ... [more]
EFTU_GEOUR5.738e-2132.00Elongation factor Tu OS=Geobacter uraniireducens (... [more]
EFTU_CYAME5.738e-2133.68Elongation factor Tu, chloroplastic OS=Cyanidiosch... [more]
EFTU2_STRRA5.738e-2134.47Elongation factor Tu-2 OS=Streptomyces ramocissimu... [more]
NODQ_AZOBR7.494e-2131.00Bifunctional enzyme nodQ OS=Azospirillum brasilens... [more]
EFTU_SYNS97.494e-2131.28Elongation factor Tu OS=Synechococcus sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC34007C01EF PostHarvC1 Citrus clementina cDNA clone C34007C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930405 ID=FC930405; Name=FC930405; organism=Citrus clementina; type=EST; length=737bp
GATTTTCGCTACACGCTCTCAGTTTCTGCAAGTCGGCGAGAGAGAAACCT
TTTAGCAAATTTCATATCAAGGTTTTATACTAGATTTGCATAATGGGTAA
GGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAA
AGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAG
CGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTC
ATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTG
GTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTAC
TGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGAT
TACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCA
CCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCAT
GCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAA
CAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAA
TTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAG
AAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGA
GAGGTCTACCAACCTGACTGGTACAGGGGTCCACCCT
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