FC930405

Overview
NameFC930405
Unique NameFC930405
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:121..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.384e-91
Identity = 165/207 (79.71%), Postives = 183/207 (88.41%), Query Frame = 3
Query:   93 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTN 713
            MGKEK+HIN+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET KY  TVIDAPGHRDFIKNMITGTSQADCA+LII    G FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD+   K+ ++R+ EIVKE S+++KKVGYNP+ VPFVPISG+ GDNMIE +TN
Sbjct:    1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV--KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTN 205          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 335.88 bits (860), Expect = 1.384e-91
Identity = 167/208 (80.29%), Postives = 184/208 (88.46%), Query Frame = 3
Query:   93 MGKE-KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTN 713
            MGKE KTHIN+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET KYY TVIDAPGHRDFIKNMITGTSQADCA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD T  ++S+ R++EI+KE  +++KKVGYNP  V FVPISGF GDNM+E STN
Sbjct:    1 MGKEDKTHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMDTT--QWSQTRFEEIIKETKNFIKKVGYNPAGVAFVPISGFNGDNMLEPSTN 206          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.808e-91
Identity = 165/208 (79.33%), Postives = 183/208 (87.98%), Query Frame = 3
Query:   93 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL 716
            MGKEK H+N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET KY  TVIDAPGHRDFIKNMITGTSQADCA+L I   TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD T  K+S+ R++EIVKE S+++KKVGYNP+ V FVPISG+ GDNM+E STN+
Sbjct:    1 MGKEKLHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYMVTVIDAPGHRDFIKNMITGTSQADCAILTIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDTT--KWSEDRFNEIVKETSTFIKKVGYNPKTVAFVPISGWHGDNMLEESTNM 206          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 3.083e-91
Identity = 162/208 (77.88%), Postives = 184/208 (88.46%), Query Frame = 3
Query:   93 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL 716
            MGK+K H+N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA E+ K SFKYAWVLDKLKAERERGITIDIALWKFET +Y  TVIDAPGHRDFIKNMITGTSQADCA+LII +  G FEAGISKDGQTREHALLAFTLGV+Q+I  CNKMD  T K+S+ R++EIVKE + ++KKVGYNP+ VPFVPISG+ GDNM+E +TN+
Sbjct:    1 MGKDKLHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQELGKSSFKYAWVLDKLKAERERGITIDIALWKFETPRYQVTVIDAPGHRDFIKNMITGTSQADCAILIIATGIGEFEAGISKDGQTREHALLAFTLGVRQLIVACNKMD--TCKWSEDRFNEIVKETNGFIKKVGYNPKAVPFVPISGWHGDNMLEETTNM 206          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.027e-91
Identity = 165/208 (79.33%), Postives = 183/208 (87.98%), Query Frame = 3
Query:   93 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL 716
            MGKEK H+N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWK ET KY  TVIDAPGHRDFIKNMITGTSQADCA+LII   TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD T   +S+AR++EIVKE S+++KKVGYNP+ V FVPISG+ GDNM+E STN+
Sbjct:    1 MGKEKAHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKSETPKYMVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDTT--NWSEARFNEIVKETSNFIKKVGYNPKTVAFVPISGWHGDNMLEPSTNM 206          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.027e-91
Identity = 163/207 (78.74%), Postives = 184/207 (88.89%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLT 719
            K K HINIVVIGHVDSGKST+TGH+IYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITIDIALWKFETTKY  T+IDAPGHRDFIKNMITGTSQADCAVLI+ S+TG FEAGISK+GQTREHALLAFTLGVKQMI   NK+D T P YS+AR++EI KE+S+Y+KKVGY+P+ VP +P+SG+ GDNMIE S N++
Sbjct:    4 KVKPHINIVVIGHVDSGKSTSTGHMIYKCGGIDKRQIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETTKYVVTIIDAPGHRDFIKNMITGTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAFTLGVKQMIVAVNKIDNTEPPYSEARFNEIKKEISAYVKKVGYDPKTVPVLPVSGWHGDNMIEPSPNMS 210          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 6.869e-91
Identity = 166/208 (79.81%), Postives = 184/208 (88.46%), Query Frame = 3
Query:   93 MGKE-KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTN 713
            MGKE KTHIN+VVIGHVDSGKSTTTGHLIY+ GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET KYY TVIDAPGHRDFIKNMITGTSQADCA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD  T  +++ARY EI+KE S+++KKVG+NP+ V FVPISGF GDNM+  STN
Sbjct:    1 MGKEDKTHINVVVIGHVDSGKSTTTGHLIYQCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMD--TANWAEARYQEIIKETSNFIKKVGFNPKAVAFVPISGFNGDNMLTPSTN 206          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 6.869e-91
Identity = 163/208 (78.37%), Postives = 185/208 (88.94%), Query Frame = 3
Query:   93 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL 716
            M KEKTHINIVVIGHVDSGKSTTTGHLIYK GGID+R IE+FEKE+AEM K SFKYAWVLD LKAERERGITIDI+LWKFET+KYY T+IDAPGHRDFIKNMITGTSQAD A+LI+ + TG FEAGISK+GQTREH LL++TLGVKQMI   NKMDA   +Y + RY+EI KE+S++LKK GYNP+K+PFVPISGF+GDNMIE STN+
Sbjct:    1 MPKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDQRTIEKFEKESAEMGKGSFKYAWVLDNLKAERERGITIDISLWKFETSKYYFTIIDAPGHRDFIKNMITGTSQADVAILIVAAGTGEFEAGISKNGQTREHILLSYTLGVKQMIVGVNKMDAI--QYKQERYEEIKKEISAFLKKTGYNPDKIPFVPISGFQGDNMIEPSTNM 206          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.999e-90
Identity = 162/208 (77.88%), Postives = 182/208 (87.50%), Query Frame = 3
Query:   93 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL 716
            MGKEK H+N+VVIGHVDSGKSTTTGHLIYKLGGID R IE+FEKE+AEM K SFKYAWVLDKLKAERERGITIDIALWKFET   + T+IDAPGHRDFIKNMITGTSQAD A+LII S TG FEAGISK+GQTREHALLA+T+GVKQM+   NKMD+T P YS+ RY+EI KEVS++L KVGY P K+ FVPISGF+GDN+ E STN+
Sbjct:    1 MGKEKEHLNLVVIGHVDSGKSTTTGHLIYKLGGIDARTIEKFEKESAEMGKASFKYAWVLDKLKAERERGITIDIALWKFETENRHYTIIDAPGHRDFIKNMITGTSQADAAILIIASGTGEFEAGISKEGQTREHALLAYTMGVKQMVVAMNKMDSTEPPYSEDRYEEIKKEVSTFLAKVGYKPAKMNFVPISGFQGDNIQENSTNM 208          
BLAST of FC930405 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.167e-88
Identity = 159/205 (77.56%), Postives = 176/205 (85.85%), Query Frame = 3
Query:   93 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERS 707
            MGKEK H++IVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDIALWKFET KY  T+IDAPGHRDFIKNMITGTSQAD A+L+I S  G FEAGIS++GQTREHALLA+TLGVKQMI  CNKMD     +SK RY+E+ KE+  YLKKVGYNP KVP VP SG+ G+N+ ER+
Sbjct:    1 MGKEKQHVSIVVIGHVDSGKSTTTGHLIYKCGGIDKRAIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETDKYNFTIIDAPGHRDFIKNMITGTSQADLAILVIASPPGEFEAGISQNGQTREHALLAYTLGVKQMIVACNKMDDKNVNWSKERYEEVSKEMDLYLKKVGYNPPKVPKVPTSGWTGENLFERT 205          
The following BLAST results are available for this feature:
BLAST of FC930405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_YEAST1.384e-9179.71Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_NEUCR1.384e-9180.29Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_SCHCO1.808e-9179.33Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_CRYNE3.083e-9177.88Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A_PIRIN4.027e-9179.33Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_HYDAT4.027e-9178.74Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_TRIRE6.869e-9179.81Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]
EF1A_ENTHI6.869e-9178.37Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A1_EUPCR1.999e-9077.88Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1AC_PORPU4.167e-8877.56Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]

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Properties
Property NameValue
Genbank descriptionC34007C01EF PostHarvC1 Citrus clementina cDNA clone C34007C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930405 ID=FC930405; Name=FC930405; organism=Citrus clementina; type=EST; length=737bp
GATTTTCGCTACACGCTCTCAGTTTCTGCAAGTCGGCGAGAGAGAAACCT
TTTAGCAAATTTCATATCAAGGTTTTATACTAGATTTGCATAATGGGTAA
GGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAA
AGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAG
CGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTC
ATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTG
GTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTAC
TGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGAT
TACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCA
CCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCAT
GCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAA
CAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAA
TTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAG
AAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGA
GAGGTCTACCAACCTGACTGGTACAGGGGTCCACCCT
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