FC930411

Overview
NameFC930411
Unique NameFC930411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.042e-17
Identity = 57/148 (38.51%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  253 LSDREASTSAKRNKDT-GNV----DVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKG----------KLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDE-SRKQLLDW 648
            L  + +S S + N  T G +    ++  F  + + AAT NF   + LG+GGFG V+KG          K  TG  IAVK+L+    QG +E+  EV  + +  H NL KL+G CLE + ++LVYEFMP  SL+  +F   S  Q L W
Sbjct:   29 LGSKSSSVSIRTNPRTEGEILQSPNLKSFTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSW 176          

HSP 2 Score: 20.7866 bits (42), Expect = 5.042e-17
Identity = 7/16 (43.75%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  654 RFDIILGIARGVLYLH 701
            R  + LG A+G+ +LH
Sbjct:  179 RLKVALGAAKGLAFLH 194          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: Y5181_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 1
Query:  256 SDREASTSAKRNKDTGNVDVTF------FELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDW 648
            S+ EA TS     D+ + + T       F  + VL  T+NF     LG+GGFG VY G +   +++AVK LS +S QG ++FK EV L+ ++ H+NL  L+G C E D+  L+YE+M N  LD  +  +    +L+W
Sbjct:  539 SNDEAPTSCMLPADSRSSEPTIVTKNKKFTYAEVLTMTNNFQKI--LGKGGFGIVYYGSVNGTEQVAVKMLSHSSAQGYKQFKAEVELLLRVHHKNLVGLVGYCEEGDKLALIYEYMANGDLDEHMSGKRGGSILNW 673          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: WAK3_ARATH (Wall-associated receptor kinase 3 OS=Arabidopsis thaliana GN=WAK3 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 45/112 (40.18%), Postives = 69/112 (61.61%), Query Frame = 1
Query:  304 NVDVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSL-DYF---IFDES 627
            N+D   F    +  AT+ +  S  LGQGG G VYKG L     +A+K+      + +++F +EVL+++++ HRN+ K+LGCCLE +  +LVYEF+ N +L D+    IFD S
Sbjct:  397 NIDFKIFTEEGMKEATNGYDESRILGQGGQGTVYKGILPDNTIVAIKKARLADSRQVDQFIHEVLVLSQINHRNVVKILGCCLETEVPLLVYEFITNGTLFDHLHGSIFDSS 508          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: Y1756_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07560 OS=Arabidopsis thaliana GN=At1g07560 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 52/126 (41.27%), Postives = 74/126 (58.73%), Query Frame = 1
Query:  226 LLFLNSSTRLSDREASTSAKRNKDTGNVDVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSL 603
            LLF+    R S R+  + ++++ +T     T+ E   VLA T  F     LG+GGFG VY G +   +E+AVK LS +S QG +EFK EV L+ ++ H NL  L+G C EKD   L+Y++M N  L
Sbjct:  531 LLFVCIKRRSSSRKGPSPSQQSIETIKKRYTYAE---VLAMTKKFE--RVLGKGGFGMVYHGYINGTEEVAVKLLSPSSAQGYKEFKTEVELLLRVYHTNLVSLVGYCDEKDHLALIYQYMVNGDL 651          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: WAKLS_ARATH (Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana GN=WAKL16 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1
Query:  298 TGNVDVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSL 603
            + N+D   F    +  AT+ +  S  LGQGG   VYKG L     +A+K+        +E+F NEVL+++++ HRN+ KLLGCCLE +  +LVYEF+   SL
Sbjct:   88 SSNIDFKIFTEEDMKEATNGYDVSRILGQGGQWTVYKGILPDNSIVAIKKTRLGDNNQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFITGGSL 189          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.425e-16
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  316 TFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSG-QGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDWKS 654
            TF EL     ATD FS+ + LG GGFG VY+GK   G  +AVKRL   +G  G  +F+ E+ +I+   HRNL +L+G C    E++LVY +M N S+   +     K  LDW +
Sbjct:  288 TFRELHV---ATDGFSSKSILGAGGFGNVYRGKFGDGTVVAVKRLKDVNGTSGNSQFRTELEMISLAVHRNLLRLIGYCASSSERLLVYPYMSNGSVASRL---KAKPALDWNT 395          

HSP 2 Score: 23.0978 bits (48), Expect = 1.425e-16
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  654 RFDIILGIARGVLYLHQ 704
            R  I +G ARG+ YLH+
Sbjct:  396 RKKIAIGAARGLFYLHE 412          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.426e-16
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 1
Query:  322 FELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIE-EFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQ-LLDW 648
            F L  +  A+D FS  N LG+GGFG VYKG+LA G  +AVKRL      G E +F+ EV +I+   HRNL +L G C+   E++LVY +M N S+   + +    Q  LDW
Sbjct:  290 FSLRELQVASDGFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDW 400          

HSP 2 Score: 21.557 bits (44), Expect = 1.426e-16
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  663 IILGIARGVLYLH 701
            I LG ARG+ YLH
Sbjct:  406 IALGSARGLSYLH 418          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 58/163 (35.58%), Postives = 81/163 (49.69%), Query Frame = 1
Query:  241 SSTRLSDREASTSAKRNKDTG--------------NVDVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKG----------KLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESR-KQLLDWKS 654
            SST LS +  S    +   T               N ++  F LS + +AT NF   + +G+GGFG V+KG          K  TG  IAVKRL+    QG  E+  E+  + +L H NL KL+G CLE++ ++LVYEFM   SL+  +F      Q L W +
Sbjct:   15 SSTWLSSKFLSRDGSKGSSTASFSYMPRTEGEILQNANLKNFSLSELKSATRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKRLNQEGFQGHREWLAEINYLGQLDHPNLVKLIGYCLEEEHRLLVYEFMTRGSLENHLFRRGTFYQPLSWNT 177          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: ACCR3_ARATH (Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.843e-16
Identity = 44/127 (34.65%), Postives = 76/127 (59.84%), Query Frame = 1
Query:  262 REASTSAKRNKDTGNVDVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTS-----GQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDES 627
            + + TS+ ++ D        F  S + +AT NFS  NK+G G FG VY+GKL  G+E+A+KR    +      +    F +E+  +++L H++L +L+G C E++EK+LVY++M N +L   + D++
Sbjct:  468 QRSGTSSMKHADKAEE----FSFSELASATGNFSLENKIGSGSFGVVYRGKLNDGREVAIKRGEVNAKMKKFQEKETAFDSEIAFLSRLHHKHLVRLVGYCEEREEKLLVYDYMKNGALYDHLHDKN 590          

HSP 2 Score: 21.1718 bits (43), Expect = 1.843e-16
Identity = 9/16 (56.25%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  654 RFDIILGIARGVLYLH 701
            R  I L  ARG+ YLH
Sbjct:  605 RIKIALDAARGIEYLH 620          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: WAKLQ_ARATH (Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  253 LSDREASTSAKRNKDTGNVDVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSL 603
            + +RE   SA     +  +    F    +  AT+NFS  N +G GGFG V+K  L  G   A+KR    + +G ++  NEV ++ ++ HR+L +LLGCC++ +  +L+YEF+PN +L
Sbjct:  332 VKEREEMLSANSTGKSSRI----FTGREITKATNNFSKDNLIGTGGFGEVFKAVLEDGTITAIKRAKLNNTKGTDQILNEVRILCQVNHRSLVRLLGCCVDLELPLLIYEFIPNGTL 444          
The following BLAST results are available for this feature:
BLAST of FC930411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
APK1B_ARATH5.042e-1738.51Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
Y5181_ARATH6.140e-1737.96Probable LRR receptor-like serine/threonine-protei... [more]
WAK3_ARATH8.019e-1740.18Wall-associated receptor kinase 3 OS=Arabidopsis t... [more]
Y1756_ARATH1.368e-1641.27Probable LRR receptor-like serine/threonine-protei... [more]
WAKLS_ARATH1.368e-1641.18Putative wall-associated receptor kinase-like 16 O... [more]
Y2239_ARATH1.425e-1642.11Probable LRR receptor-like serine/threonine-protei... [more]
SERK1_ARATH1.426e-1644.14Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
NAK_ARATH1.786e-1635.58Probable serine/threonine-protein kinase NAK OS=Ar... [more]
ACCR3_ARATH1.843e-1634.65Putative serine/threonine-protein kinase-like prot... [more]
WAKLQ_ARATH2.333e-1635.90Wall-associated receptor kinase-like 20 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC34007C07EF PostHarvC1 Citrus clementina cDNA clone C34007C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930411 ID=FC930411; Name=FC930411; organism=Citrus clementina; type=EST; length=707bp
GACATCACAAATGCTGGTCAAGACTTATTTGTACGTGCTGACGCGGCTGA
ATTAGCTGCAGAGGCACAGAAAAACTCAAAAAGCAATCGAGCAAGAAAGA
GGAGGCTTGCTCTTATTATCGTCGCTATTGTTCTCGGAGTGCTTCTGCTG
GGCTTATGCTACTTTTTCCTGTGGAGAAGGCTTGATACAAGGATAGGTGA
GAGGAAAAGACAAAGGCGACGTGAATTGTTATTTTTGAATTCAAGCACAA
GATTGTCTGATCGTGAGGCCTCCACTAGTGCTAAACGCAACAAAGACACT
GGGAATGTAGATGTGACATTCTTTGAACTAAGCACTGTGCTAGCAGCGAC
AGATAATTTTTCCACTTCTAATAAGCTTGGACAAGGGGGATTTGGTCCAG
TTTACAAGGGTAAGCTAGCGACTGGACAGGAGATAGCTGTCAAAAGGTTA
TCAACAACATCAGGACAAGGAATTGAGGAATTCAAAAATGAGGTCTTATT
GATAGCAAAACTTCAACACAGAAATCTTGCAAAGCTCTTGGGTTGTTGTT
TGGAAAAAGATGAAAAGATGTTAGTCTATGAGTTCATGCCTAACAAAAGC
TTGGACTACTTTATTTTTGATGAATCAAGGAAGCAATTGTTGGATTGGAA
AAGCGCTTCGATATAATTTTAGGGATAGCTCGAGGGGTCCTATATCTACA
TCAAGAT
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