FC930411

Overview
NameFC930411
Unique NameFC930411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: WAKLB_ARATH (Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 55/118 (46.61%), Postives = 76/118 (64.41%), Query Frame = 1
Query:  301 GNVDVT-FFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDWK 651
            GNV+++  F    +  ATDNF+ +  LGQGG G VYKG L  G+ +AVKR        +EEF NEV+++A++ HRN+ KLLGCCLE +  +LVYEF+PN  L   + DES    + W+
Sbjct:  396 GNVEMSRIFSSHELEKATDNFNKNRVLGQGGQGTVYKGMLVDGRIVAVKRSKAVDEDRVEEFINEVVVLAQINHRNIVKLLGCCLETEVPVLVYEFVPNGDLCKRLHDESDDYTMTWE 513          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: CRK1_ARATH (Cysteine-rich receptor-like protein kinase 1 OS=Arabidopsis thaliana GN=CRK1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 5.806e-23
Identity = 49/110 (44.55%), Postives = 74/110 (67.27%), Query Frame = 1
Query:  322 FELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDWK 651
            F+   +  AT++F  S KLGQGG G VYKG L  G+ +AVK+L   + +  ++F NEV LI+ +QH+NL +LLGC +E  + +LVYE++ N+SLD  +F ++   +L WK
Sbjct:  306 FKYEMLEKATESFHDSMKLGQGGAGSVYKGILPDGRIVAVKKLFFNTREWADQFFNEVNLISGVQHKNLVRLLGCSIEGPKSLLVYEYVHNRSLDQILFMKNTVHILSWK 415          

HSP 2 Score: 28.4906 bits (62), Expect = 5.806e-23
Identity = 11/23 (47.83%), Postives = 19/23 (82.61%), Query Frame = 3
Query:  636 IVGLEKRFDIILGIARGVLYLHQ 704
            I+  ++RF+II+GI+ G+ YLH+
Sbjct:  411 ILSWKQRFNIIIGISEGLEYLHR 433          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: WAKLK_ARATH (Putative wall-associated receptor kinase-like 11 OS=Arabidopsis thaliana GN=WAKL11 PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 56/121 (46.28%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  289 NKDTGNVDVT-FFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDW 648
            N + GNV+ T  F    +  ATDNFS S  LGQGG G VYKG L  G+ +AVK+        +EEF NEV++++++ HR++ KLLGCCLE +   LVYEF+PN +L   I +ES      W
Sbjct:  427 NTNKGNVEKTRIFSSRELEKATDNFSESRILGQGGQGTVYKGMLVDGRTVAVKKSKVVDEDKLEEFINEVVILSQINHRHVVKLLGCCLETEVPTLVYEFIPNGNLFQHIHEESDDYTKTW 547          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.270e-22
Identity = 55/116 (47.41%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  304 NVDVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKS-LDYFIFDESRKQLLDW 648
            +V V  F L  +  AT+ + T   +G+GGFG VY+G L  GQE+AVK  S+TS QG  EF NE+ L++ +QH NL  LLG C E D+++LVY FM N S LD    + S++++LDW
Sbjct:  580 SVSVKPFTLEYIEQATEQYKTL--IGEGGFGSVYRGTLDDGQEVAVKVRSSTSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYGEASKRKILDW 693          

HSP 2 Score: 25.7942 bits (55), Expect = 1.270e-22
Identity = 12/25 (48.00%), Postives = 14/25 (56.00%), Query Frame = 3
Query:  627 KEAIVGLEKRFDIILGIARGVLYLH 701
            K  I+    R  I LG ARG+ YLH
Sbjct:  687 KRKILDWPTRLSIALGAARGLAYLH 711          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.796e-22
Identity = 56/123 (45.53%), Postives = 83/123 (67.48%), Query Frame = 1
Query:  295 DTGNVDVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLST--TSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQL--LDWK 651
            + GN+ ++   L +V   T+NFS+ N LG GGFG VYKG+L  G +IAVKR+     +G+G  EFK+E+ ++ K++HR+L  LLG CL+ +EK+LVYE+MP  +L   +F+ S + L  L WK
Sbjct:  570 EAGNMLISIQVLRSV---TNNFSSDNILGSGGFGVVYKGELHDGTKIAVKRMENGVIAGKGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHLFEWSEEGLKPLLWK 689          

HSP 2 Score: 23.0978 bits (48), Expect = 2.796e-22
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  648 EKRFDIILGIARGVLYLH 701
            ++R  + L +ARGV YLH
Sbjct:  689 KQRLTLALDVARGVEYLH 706          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.638e-22
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 1
Query:  304 NVDVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKS-LDYFIFDESRKQLLDW 648
            +V V  F L  +  AT+ + T   +G+GGFG VY+G L  GQE+AVK  S TS QG  EF NE+ L++ +QH NL  LLG C E D+++LVY FM N S LD    + +++++LDW
Sbjct:  579 SVSVKPFTLEYIELATEKYKTL--IGEGGFGSVYRGTLDDGQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYGEPAKRKILDW 692          

HSP 2 Score: 25.7942 bits (55), Expect = 3.638e-22
Identity = 12/25 (48.00%), Postives = 14/25 (56.00%), Query Frame = 3
Query:  627 KEAIVGLEKRFDIILGIARGVLYLH 701
            K  I+    R  I LG ARG+ YLH
Sbjct:  686 KRKILDWPTRLSIALGAARGLAYLH 710          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: WAKLJ_ARATH (Wall-associated receptor kinase-like 10 OS=Arabidopsis thaliana GN=WAKL10 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 53/110 (48.18%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  301 GNVDVT-FFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDES 627
            GNVD T  F    +  AT+NFS +  LG+GG G VYKG L  G+ +AVK+        +EEF NEV++++++ HRN+ KLLGCCLE D  +LVYEF+PN +L   + D+S
Sbjct:  413 GNVDSTRVFNSRELEKATENFSLTRILGEGGQGTVYKGMLVDGRIVAVKKSKVVDEDKLEEFINEVVILSQINHRNIVKLLGCCLETDVPILVYEFIPNGNLFEHLHDDS 522          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: WAKLE_ARATH (Wall-associated receptor kinase-like 5 OS=Arabidopsis thaliana GN=WAKL5 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 55/141 (39.01%), Postives = 81/141 (57.45%), Query Frame = 1
Query:  241 SSTRLSDREASTSAKRNKDT---GNVDVT-FFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDWK 651
            SS +   R      K+   T   GNVD++  F    +  ATDNFS    LG+G  G VYKG +  G+ IAVKR        +E+F NE++L++++ HRN+ KL+GCCLE +  +LVYE++PN  +   + DES    + W+
Sbjct:  389 SSRKFFKRNGGLLLKQQLTTTNDGNVDMSRLFSSEELKKATDNFSVKRVLGKGSQGTVYKGMMVDGKIIAVKRSKVVDEDKLEKFINEIILLSQINHRNIVKLIGCCLETEVPILVYEYIPNGDMFKRLHDESDDYAMTWE 529          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.762e-21
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 1
Query:  313 VTFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSL 603
            V  F  + +  ATDNF++S ++GQGG+G VYKG L +G  +A+KR    S QG +EF  E+ L+++L HRNL  LLG C E+ E+MLVYE+M N +L
Sbjct:  610 VKSFTYAELALATDNFNSSTQIGQGGYGKVYKGTLGSGTVVAIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLLGFCDEEGEQMLVYEYMENGTL 706          

HSP 2 Score: 25.0238 bits (53), Expect = 1.762e-21
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  654 RFDIILGIARGVLYLHQD 707
            R  I LG A+G+LYLH +
Sbjct:  723 RLRIALGSAKGILYLHTE 740          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: WAKLF_ARATH (Wall-associated receptor kinase-like 6 OS=Arabidopsis thaliana GN=WAKL6 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 55/120 (45.83%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  301 GNVDVT-FFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFD--ESRKQLLDWK 651
            GNVD++  F    +  ATDNFS +  LGQGG G VYKG LA G+ +AVKR        +EEF NEV+L++++ HRN+ KLLGCCL  +  +LVYE++PN  L   + +  ES    + W+
Sbjct:  412 GNVDMSRIFSSKELKKATDNFSMNRVLGQGGQGTVYKGMLAEGRIVAVKRSKVVGEGKMEEFINEVVLLSQINHRNIVKLLGCCLGTEVPVLVYEYIPNGDLFKRLHEKSESNDYTMTWE 531          
The following BLAST results are available for this feature:
BLAST of FC930411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
WAKLB_ARATH2.574e-2346.61Wall-associated receptor kinase-like 2 OS=Arabidop... [more]
CRK1_ARATH5.806e-2344.55Cysteine-rich receptor-like protein kinase 1 OS=Ar... [more]
WAKLK_ARATH7.488e-2346.28Putative wall-associated receptor kinase-like 11 O... [more]
NORK_MEDTR1.270e-2247.41Nodulation receptor kinase OS=Medicago truncatula ... [more]
TMK1_ARATH2.796e-2245.53Probable receptor protein kinase TMK1 OS=Arabidops... [more]
NORK_PEA3.638e-2246.55Nodulation receptor kinase OS=Pisum sativum GN=NOR... [more]
WAKLJ_ARATH4.854e-2248.18Wall-associated receptor kinase-like 10 OS=Arabido... [more]
WAKLE_ARATH8.279e-2239.01Wall-associated receptor kinase-like 5 OS=Arabidop... [more]
Y1684_ARATH1.762e-2149.48Probable LRR receptor-like serine/threonine-protei... [more]
WAKLF_ARATH1.844e-2145.83Wall-associated receptor kinase-like 6 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC34007C07EF PostHarvC1 Citrus clementina cDNA clone C34007C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930411 ID=FC930411; Name=FC930411; organism=Citrus clementina; type=EST; length=707bp
GACATCACAAATGCTGGTCAAGACTTATTTGTACGTGCTGACGCGGCTGA
ATTAGCTGCAGAGGCACAGAAAAACTCAAAAAGCAATCGAGCAAGAAAGA
GGAGGCTTGCTCTTATTATCGTCGCTATTGTTCTCGGAGTGCTTCTGCTG
GGCTTATGCTACTTTTTCCTGTGGAGAAGGCTTGATACAAGGATAGGTGA
GAGGAAAAGACAAAGGCGACGTGAATTGTTATTTTTGAATTCAAGCACAA
GATTGTCTGATCGTGAGGCCTCCACTAGTGCTAAACGCAACAAAGACACT
GGGAATGTAGATGTGACATTCTTTGAACTAAGCACTGTGCTAGCAGCGAC
AGATAATTTTTCCACTTCTAATAAGCTTGGACAAGGGGGATTTGGTCCAG
TTTACAAGGGTAAGCTAGCGACTGGACAGGAGATAGCTGTCAAAAGGTTA
TCAACAACATCAGGACAAGGAATTGAGGAATTCAAAAATGAGGTCTTATT
GATAGCAAAACTTCAACACAGAAATCTTGCAAAGCTCTTGGGTTGTTGTT
TGGAAAAAGATGAAAAGATGTTAGTCTATGAGTTCATGCCTAACAAAAGC
TTGGACTACTTTATTTTTGATGAATCAAGGAAGCAATTGTTGGATTGGAA
AAGCGCTTCGATATAATTTTAGGGATAGCTCGAGGGGTCCTATATCTACA
TCAAGAT
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