FC930411

Overview
NameFC930411
Unique NameFC930411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: WAKLO_ARATH (Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 50/126 (39.68%), Postives = 75/126 (59.52%), Query Frame = 1
Query:  232 FLNSSTRLSDREASTSAKR--NKDTGNVDVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSL 603
            F     R +   +  SAKR  ++  GN  V FF    +  ATD FS   KLG G +G VY+GKL   + +A+KRL     + +++  NE+ L++ + H NL +LLGCC+E+ + +LVYE+MPN +L
Sbjct:  304 FFCKRRRSTPLRSHLSAKRLLSEAAGNSSVAFFPYKEIEKATDGFSEKQKLGIGAYGTVYRGKLQNDEWVAIKRLRHRDSESLDQVMNEIKLLSSVSHPNLVRLLGCCIEQGDPVLVYEYMPNGTL 429          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: WAKLG_ARATH (Wall-associated receptor kinase-like 8 OS=Arabidopsis thaliana GN=WAKL8 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 50/118 (42.37%), Postives = 76/118 (64.41%), Query Frame = 1
Query:  301 GNVDVT-FFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDWK 651
            G+V+ T  F  + +  ATD F+ S  LGQGG G VYKG L  G  +AVK+      + +EEF NE++L++++ HRN+ K+LGCCLE +  +LVYEF+PN++L   + + S    + W+
Sbjct:  370 GSVNRTKVFSSNDLENATDRFNASRILGQGGQGTVYKGMLEDGMIVAVKKSKALKEENLEEFINEIILLSQINHRNVVKILGCCLETEVPILVYEFIPNRNLFDHLHNPSEDFPMSWE 487          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: WAKLC_ARATH (Wall-associated receptor kinase-like 3 OS=Arabidopsis thaliana GN=WAKL3 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 51/118 (43.22%), Postives = 73/118 (61.86%), Query Frame = 1
Query:  301 GNVDVT-FFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLLDWK 651
            G+V+++  F    +  ATDNFS    LGQGG G VYK  L  G  +AVKR        +EEF NE++L++++ HRN+ KLLGCCLE +  +LVYE++PN  L   + DE    ++ W+
Sbjct:  408 GSVEMSKIFSSRELEKATDNFSIDRVLGQGGQGTVYKRMLVDGSIVAVKRSKVVDEDKMEEFINEIVLLSQINHRNIVKLLGCCLETEVPILVYEYIPNGDLFKRLHDEYDDYMMTWE 525          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.503e-21
Identity = 52/132 (39.39%), Postives = 81/132 (61.36%), Query Frame = 1
Query:  277 SAKRNKDTGNVDVTFFE-------LSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDES-RKQLLDW 648
            S  R+++  ++++  FE       L  ++ ATD+FS  N +G GGFG VYK  L   + +AVK+LS    QG  EF  E+  + K++H NL  LLG C   +EK+LVYE+M N SLD+++ +++   ++LDW
Sbjct:  883 SGSRSREPLSINIAMFEQPLLKVRLGDIVEATDHFSKKNIIGDGGFGTVYKACLPGEKTVAVKKLSEAKTQGNREFMAEMETLGKVKHPNLVSLLGYCSFSEEKLLVYEYMVNGSLDHWLRNQTGMLEVLDW 1014          

HSP 2 Score: 23.483 bits (49), Expect = 8.503e-21
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 3
Query:  636 IVGLEKRFDIILGIARGVLYLH 701
            ++   KR  I +G ARG+ +LH
Sbjct: 1011 VLDWSKRLKIAVGAARGLAFLH 1032          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: LRKA1_ARATH (Lectin-domain containing receptor kinase A4.1 OS=Arabidopsis thaliana GN=LECRKA4.1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.117e-20
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 1
Query:  346 ATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQ--LLDWKS 654
            ATD F  +  +G GGFG V+KGKL     IAVK++  +S QG+ EF  E+  + KL+H+NL  L G C  K++ +L+Y+++PN SLD  ++   R+   +L W +
Sbjct:  363 ATDGFKKTGIIGTGGFGTVFKGKLPNSDPIAVKKIIPSSRQGVREFVAEIESLGKLRHKNLVNLQGWCKHKNDLLLIYDYIPNGSLDSLLYTVPRRSGAVLSWNA 467          

HSP 2 Score: 29.261 bits (64), Expect = 1.117e-20
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  633 AIVGLEKRFDIILGIARGVLYLHQD 707
            A++    RF I  GIA G+LYLH++
Sbjct:  461 AVLSWNARFQIAKGIASGLLYLHEE 485          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  301 GNVDVTFFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSL 603
            G    TF ELS     T+NFS +N +G GG+G VYKG L  GQ IA+KR    S QG  EFK E+ L++++ H+N+ KLLG C ++ E+MLVYE++PN SL
Sbjct:  618 GTKAFTFEELSK---CTNNFSDANDVGGGGYGQVYKGTLPNGQVIAIKRAQQGSMQGAFEFKTEIELLSRVHHKNVVKLLGFCFDQKEQMLVYEYIPNGSL 715          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: WAKLH_ARATH (Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  346 ATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDESRKQLL 642
            AT+NFS++  LGQGG G VYKG L  G+ +AVK+        +EEF NEV++++++ HRN+ KLLGCCLE    +LVYEF+PN +L   + DE  + ++
Sbjct:  443 ATENFSSNRILGQGGQGTVYKGMLVDGRIVAVKKSKVVDEDKLEEFINEVVILSQINHRNIVKLLGCCLETKVPVLVYEFIPNGNLFEHLHDEFDENIM 541          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.443e-20
Identity = 46/87 (52.87%), Postives = 62/87 (71.26%), Query Frame = 1
Query:  343 AATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSL 603
            +AT +FS  +++G+GG+G VYKG L  G  +AVKR    S QG +EF  E+ L+++L HRNL  LLG C +K E+MLVYE+MPN SL
Sbjct:  626 SATSSFSDLSQIGRGGYGKVYKGHLPGGLVVAVKRAEQGSLQGQKEFFTEIELLSRLHHRNLVSLLGYCDQKGEQMLVYEYMPNGSL 712          

HSP 2 Score: 26.9498 bits (58), Expect = 2.443e-20
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  639 VGLEKRFDIILGIARGVLYLHQD 707
            + L  R  I LG ARG+LYLH +
Sbjct:  724 LSLALRLRIALGSARGILYLHTE 746          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.463e-20
Identity = 51/110 (46.36%), Postives = 63/110 (57.27%), Query Frame = 1
Query:  322 FELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSL-DYFIFDESRKQLLDW 648
            F    +  AT NFS  N LGQGGFG VYKG L  G  +AVKRL      G  +F+ EV +I    HRNL +L G C+  +E+MLVY +MPN S+ D    +   K  LDW
Sbjct:  288 FSFREIQTATSNFSPKNILGQGGFGMVYKGYLPNGTVVAVKRLKDPIYTGEVQFQTEVEMIGLAVHRNLLRLFGFCMTPEERMLVYPYMPNGSVADRLRDNYGEKPSLDW 397          

HSP 2 Score: 26.5646 bits (57), Expect = 2.463e-20
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  651 KRFDIILGIARGVLYLHQ 704
            +R  I LG ARG++YLH+
Sbjct:  399 RRISIALGAARGLVYLHE 416          
BLAST of FC930411 vs. ExPASy Swiss-Prot
Match: WAKLL_ARATH (Putative wall-associated receptor kinase-like 13 OS=Arabidopsis thaliana GN=WAKL13 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 48/113 (42.48%), Postives = 73/113 (64.60%), Query Frame = 1
Query:  289 NKDTGNVDVT-FFELSTVLAATDNFSTSNKLGQGGFGPVYKGKLATGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLAKLLGCCLEKDEKMLVYEFMPNKSLDYFIFDE 624
            N   G V+ T  F    +  ATDNF+ +  +GQGG G VYKG L  G+ +AVK+ +      ++EF NEV++++++ HR++ KLLGCCLE +  +LVYEF+PN +L   + +E
Sbjct:  430 NTTQGRVEKTKLFSSRELEKATDNFNDNRVIGQGGQGTVYKGMLVDGRSVAVKKSNVVDEDKLQEFINEVIILSQINHRHVVKLLGCCLETEVPILVYEFIPNGNLFQHLHEE 542          
The following BLAST results are available for this feature:
BLAST of FC930411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
WAKLO_ARATH4.109e-2139.68Wall-associated receptor kinase-like 14 OS=Arabido... [more]
WAKLG_ARATH7.008e-2142.37Wall-associated receptor kinase-like 8 OS=Arabidop... [more]
WAKLC_ARATH7.008e-2143.22Wall-associated receptor kinase-like 3 OS=Arabidop... [more]
EXS_ARATH8.503e-2139.39Leucine-rich repeat receptor protein kinase EXS OS... [more]
LRKA1_ARATH1.117e-2040.95Lectin-domain containing receptor kinase A4.1 OS=A... [more]
Y5977_ARATH1.561e-2050.50Probable leucine-rich repeat receptor-like protein... [more]
WAKLH_ARATH1.561e-2047.47Wall-associated receptor kinase-like 9 OS=Arabidop... [more]
Y5374_ARATH2.443e-2052.87Probable LRR receptor-like serine/threonine-protei... [more]
Y5457_ARATH2.463e-2046.36Probable LRR receptor-like serine/threonine-protei... [more]
WAKLL_ARATH2.663e-2042.48Putative wall-associated receptor kinase-like 13 O... [more]

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Properties
Property NameValue
Genbank descriptionC34007C07EF PostHarvC1 Citrus clementina cDNA clone C34007C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930411 ID=FC930411; Name=FC930411; organism=Citrus clementina; type=EST; length=707bp
GACATCACAAATGCTGGTCAAGACTTATTTGTACGTGCTGACGCGGCTGA
ATTAGCTGCAGAGGCACAGAAAAACTCAAAAAGCAATCGAGCAAGAAAGA
GGAGGCTTGCTCTTATTATCGTCGCTATTGTTCTCGGAGTGCTTCTGCTG
GGCTTATGCTACTTTTTCCTGTGGAGAAGGCTTGATACAAGGATAGGTGA
GAGGAAAAGACAAAGGCGACGTGAATTGTTATTTTTGAATTCAAGCACAA
GATTGTCTGATCGTGAGGCCTCCACTAGTGCTAAACGCAACAAAGACACT
GGGAATGTAGATGTGACATTCTTTGAACTAAGCACTGTGCTAGCAGCGAC
AGATAATTTTTCCACTTCTAATAAGCTTGGACAAGGGGGATTTGGTCCAG
TTTACAAGGGTAAGCTAGCGACTGGACAGGAGATAGCTGTCAAAAGGTTA
TCAACAACATCAGGACAAGGAATTGAGGAATTCAAAAATGAGGTCTTATT
GATAGCAAAACTTCAACACAGAAATCTTGCAAAGCTCTTGGGTTGTTGTT
TGGAAAAAGATGAAAAGATGTTAGTCTATGAGTTCATGCCTAACAAAAGC
TTGGACTACTTTATTTTTGATGAATCAAGGAAGCAATTGTTGGATTGGAA
AAGCGCTTCGATATAATTTTAGGGATAGCTCGAGGGGTCCTATATCTACA
TCAAGAT
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